AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG040917

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040917 MtrunA17_Chr7g0275911 74.903 259 10 3 1 207 1 256 8.19e-135 378
MsaG040917 MtrunA17_Chr8g0346561 87.755 98 12 0 1 98 1 98 1.80e-64 201
MsaG040917 MtrunA17_Chr4g0070611 74.490 98 25 0 1 98 1 98 3.12e-54 175
MsaG040917 MtrunA17_Chr4g0070641 74.490 98 25 0 1 98 1 98 5.93e-54 170
MsaG040917 MtrunA17_Chr3g0121241 75.532 94 23 0 5 98 35 128 1.24e-51 168
MsaG040917 MtrunA17_Chr4g0068061 70.408 98 29 0 1 98 1 98 1.77e-51 169
MsaG040917 MtrunA17_Chr4g0037141 58.156 141 52 1 1 134 1 141 1.15e-50 165
MsaG040917 MtrunA17_Chr1g0194951 71.429 98 28 0 1 98 1 98 9.01e-50 165
MsaG040917 MtrunA17_Chr1g0187761 68.367 98 31 0 1 98 1 98 5.56e-49 160
MsaG040917 MtrunA17_Chr3g0131121 56.204 137 53 1 1 130 1 137 5.18e-48 159
MsaG040917 MtrunA17_Chr7g0261281 65.306 98 34 0 1 98 1 98 2.44e-47 156
MsaG040917 MtrunA17_Chr1g0167691 66.327 98 33 0 1 98 1 98 4.79e-47 155
MsaG040917 MtrunA17_Chr1g0167661 66.327 98 33 0 1 98 1 98 1.56e-46 154
MsaG040917 MtrunA17_Chr7g0274581 60.204 98 39 0 1 98 1 98 4.83e-46 151
MsaG040917 MtrunA17_Chr2g0323411 66.327 98 33 0 1 98 1 98 9.17e-46 154
MsaG040917 MtrunA17_Chr7g0217741 65.979 97 33 0 1 97 1 97 2.22e-45 152
MsaG040917 MtrunA17_Chr8g0349261 66.000 100 32 2 1 98 1 100 6.25e-45 151
MsaG040917 MtrunA17_Chr2g0281071 66.667 99 32 1 1 98 1 99 7.49e-45 152
MsaG040917 MtrunA17_Chr4g0039971 63.265 98 36 0 1 98 2 99 4.83e-44 150
MsaG040917 MtrunA17_Chr1g0203411 47.468 158 69 3 1 146 1 156 6.51e-44 148
MsaG040917 MtrunA17_Chr3g0115821 63.265 98 36 0 1 98 1 98 1.73e-43 148
MsaG040917 MtrunA17_Chr4g0048511 66.667 99 32 1 1 98 1 99 1.91e-43 149
MsaG040917 MtrunA17_Chr5g0435101 64.583 96 34 0 3 98 2 97 1.97e-43 144
MsaG040917 MtrunA17_Chr2g0294811 63.043 92 34 0 1 92 1 92 2.49e-43 141
MsaG040917 MtrunA17_Chr7g0269831 69.388 98 30 0 1 98 1 98 3.90e-43 147
MsaG040917 MtrunA17_Chr5g0410961 62.245 98 37 0 1 98 1 98 2.11e-42 145
MsaG040917 MtrunA17_Chr4g0042671 62.887 97 36 0 1 97 1 97 2.30e-42 147
MsaG040917 MtrunA17_Chr6g0453471 63.542 96 35 0 1 96 1 96 2.62e-42 145
MsaG040917 MtrunA17_Chr8g0385321 63.265 98 36 0 1 98 1 98 4.33e-42 144
MsaG040917 MtrunA17_Chr7g0254411 59.794 97 39 0 1 97 1 97 1.46e-41 143
MsaG040917 MtrunA17_Chr4g0060721 59.794 97 39 0 1 97 2 98 2.16e-41 142
MsaG040917 MtrunA17_Chr7g0228891 62.245 98 37 0 1 98 1 98 1.46e-40 139
MsaG040917 MtrunA17_Chr7g0217221 58.763 97 40 0 1 97 1 97 2.43e-40 138
MsaG040917 MtrunA17_Chr1g0151941 60.606 99 38 1 1 98 1 99 4.59e-40 137
MsaG040917 MtrunA17_Chr3g0092401 57.732 97 41 0 1 97 2 98 6.17e-40 138
MsaG040917 MtrunA17_Chr6g0453211 57.732 97 41 0 1 97 1 97 9.33e-40 138
MsaG040917 MtrunA17_Chr4g0055981 48.529 136 52 1 8 143 51 168 9.57e-40 135
MsaG040917 MtrunA17_Chr3g0110351 59.184 98 40 0 1 98 1 98 1.02e-39 138
MsaG040917 MtrunA17_Chr2g0311221 57.732 97 41 0 2 98 4 100 1.31e-39 138
MsaG040917 MtrunA17_Chr5g0434571 44.586 157 79 3 1 150 37 192 1.34e-39 139
MsaG040917 MtrunA17_Chr5g0395281 59.184 98 40 0 1 98 1 98 1.53e-39 137
MsaG040917 MtrunA17_Chr6g0452271 59.184 98 40 0 1 98 1 98 2.53e-39 137
MsaG040917 MtrunA17_Chr4g0057031 59.184 98 40 0 1 98 1 98 2.61e-39 135
MsaG040917 MtrunA17_Chr4g0022931 61.616 99 37 1 1 98 1 99 4.41e-39 135
MsaG040917 MtrunA17_Chr4g0022901 61.616 99 37 1 1 98 1 99 5.34e-39 135
MsaG040917 MtrunA17_Chr3g0135311 58.586 99 40 1 1 98 1 99 9.29e-39 136
MsaG040917 MtrunA17_Chr4g0044421 61.856 97 36 1 3 98 2 98 9.84e-39 132
MsaG040917 MtrunA17_Chr3g0103281 59.184 98 40 0 1 98 1 98 1.14e-38 135
MsaG040917 MtrunA17_Chr2g0327351 57.576 99 41 1 1 98 1 99 1.30e-38 135
MsaG040917 MtrunA17_Chr4g0022911 58.586 99 40 1 1 98 1 99 1.62e-38 134
MsaG040917 MtrunA17_Chr4g0054391 57.576 99 41 1 1 98 1 99 2.21e-38 134
MsaG040917 MtrunA17_Chr4g0022891 57.143 98 42 0 1 98 1 98 2.91e-38 132
MsaG040917 MtrunA17_Chr4g0028311 58.586 99 40 1 1 98 1 99 3.80e-38 134
MsaG040917 MtrunA17_Chr6g0487491 41.040 173 83 3 1 164 1 163 1.07e-37 131
MsaG040917 MtrunA17_Chr7g0264641 55.556 99 43 1 1 98 1 99 1.31e-37 131
MsaG040917 MtrunA17_Chr4g0072751 56.566 99 42 1 1 98 1 99 1.85e-37 133
MsaG040917 MtrunA17_Chr5g0397231 56.122 98 43 0 1 98 1 98 2.24e-37 132
MsaG040917 MtrunA17_Chr1g0193371 58.163 98 41 0 1 98 1 98 2.60e-37 133
MsaG040917 MtrunA17_Chr5g0400821 56.566 99 42 1 1 98 1 99 2.91e-37 131
MsaG040917 MtrunA17_Chr7g0270891 58.163 98 41 0 1 98 1 98 3.26e-37 132
MsaG040917 MtrunA17_Chr2g0323351 57.143 98 42 0 1 98 1 98 3.36e-37 129
MsaG040917 MtrunA17_Chr1g0193801 57.143 98 42 0 1 98 1 98 3.95e-37 133
MsaG040917 MtrunA17_Chr8g0387421 56.122 98 43 0 1 98 1 98 4.23e-37 131
MsaG040917 MtrunA17_Chr6g0450101 61.000 100 37 1 1 98 1 100 7.12e-37 127
MsaG040917 MtrunA17_Chr1g0152011 54.545 99 44 1 1 98 1 99 8.13e-37 131
MsaG040917 MtrunA17_Chr7g0271241 58.163 98 41 0 1 98 1 98 1.11e-36 131
MsaG040917 MtrunA17_Chr4g0042611 60.227 88 35 0 1 88 1 88 1.97e-36 122
MsaG040917 MtrunA17_Chr2g0330041 56.122 98 43 0 1 98 1 98 2.09e-36 131
MsaG040917 MtrunA17_Chr1g0209661 66.667 87 29 0 12 98 27 113 5.52e-36 128
MsaG040917 MtrunA17_Chr8g0343831 58.621 87 36 0 12 98 8 94 1.00e-35 126
MsaG040917 MtrunA17_Chr7g0228231 59.000 100 39 1 1 98 1 100 1.62e-35 124
MsaG040917 MtrunA17_Chr8g0342541 56.122 98 43 0 1 98 1 98 1.63e-35 127
MsaG040917 MtrunA17_Chr4g0058631 56.122 98 43 0 1 98 1 98 1.77e-35 128
MsaG040917 MtrunA17_Chr2g0309911 58.065 93 39 0 6 98 5 97 3.84e-35 126
MsaG040917 MtrunA17_Chr4g0022881 56.122 98 43 0 1 98 1 98 5.56e-35 123
MsaG040917 MtrunA17_Chr5g0395221 60.227 88 35 0 1 88 1 88 6.56e-35 119
MsaG040917 MtrunA17_Chr8g0342521 55.102 98 44 0 1 98 1 98 1.01e-34 125
MsaG040917 MtrunA17_Chr8g0360111 60.227 88 35 0 11 98 24 111 2.67e-34 122
MsaG040917 MtrunA17_Chr7g0240821 65.060 83 29 0 16 98 5 87 3.31e-34 121
MsaG040917 MtrunA17_Chr3g0117091 56.122 98 43 0 1 98 1 98 4.06e-34 124
MsaG040917 MtrunA17_Chr5g0417821 59.091 88 36 0 10 97 5 92 4.95e-34 122
MsaG040917 MtrunA17_Chr1g0194291 59.341 91 37 0 8 98 17 107 7.38e-34 121
MsaG040917 MtrunA17_Chr7g0220341 45.588 136 59 3 10 143 23 145 1.29e-33 121
MsaG040917 MtrunA17_Chr5g0434831 61.364 88 34 0 11 98 6 93 1.67e-33 118
MsaG040917 MtrunA17_Chr1g0168661 60.000 85 34 0 14 98 23 107 3.69e-33 119
MsaG040917 MtrunA17_Chr1g0186061 60.000 85 34 0 14 98 22 106 4.27e-33 119
MsaG040917 MtrunA17_Chr8g0342481 54.545 99 44 1 1 98 1 99 4.89e-33 122
MsaG040917 MtrunA17_Chr2g0323321 53.465 101 46 1 1 101 1 100 5.68e-33 114
MsaG040917 MtrunA17_Chr1g0211161 55.208 96 43 0 3 98 4 99 7.65e-33 118
MsaG040917 MtrunA17_Chr5g0434911 56.522 92 40 0 7 98 16 107 7.69e-33 119
MsaG040917 MtrunA17_Chr5g0434931 59.091 88 36 0 11 98 34 121 7.97e-33 119
MsaG040917 MtrunA17_Chr3g0080861 56.180 89 39 0 10 98 35 123 2.33e-32 122
MsaG040917 MtrunA17_Chr1g0194301 56.322 87 38 0 12 98 33 119 3.40e-32 117
MsaG040917 MtrunA17_Chr8g0342511 56.322 87 38 0 1 87 1 87 7.28e-32 111
MsaG040917 MtrunA17_Chr3g0088461 54.945 91 41 0 8 98 18 108 7.53e-32 118
MsaG040917 MtrunA17_Chr7g0228991 59.091 88 36 0 11 98 28 115 1.20e-31 116
MsaG040917 MtrunA17_Chr4g0032401 40.789 152 82 3 12 162 17 161 1.40e-31 117
MsaG040917 MtrunA17_Chr5g0434841 57.955 88 37 0 11 98 19 106 4.20e-31 115
MsaG040917 MtrunA17_Chr2g0328771 56.322 87 38 0 12 98 20 106 5.70e-31 115
MsaG040917 MtrunA17_Chr8g0354661 53.933 89 41 0 10 98 35 123 7.93e-31 118
MsaG040917 MtrunA17_Chr8g0342531 53.933 89 41 0 1 89 1 89 1.54e-30 110
MsaG040917 MtrunA17_Chr8g0342461 54.444 90 40 1 1 89 1 90 2.65e-30 108
MsaG040917 MtrunA17_Chr4g0068921 61.798 89 34 0 10 98 22 110 3.75e-30 110
MsaG040917 MtrunA17_Chr8g0342471 54.444 90 40 1 1 89 1 90 8.58e-30 107
MsaG040917 MtrunA17_Chr2g0293911 62.222 90 34 0 9 98 21 110 1.02e-29 112
MsaG040917 MtrunA17_Chr2g0322521 50.549 91 45 0 8 98 25 115 2.02e-29 112
MsaG040917 MtrunA17_Chr3g0099131 50.562 89 44 0 10 98 39 127 3.17e-29 113
MsaG040917 MtrunA17_Chr6g0470971 54.118 85 39 0 14 98 16 100 5.23e-29 109
MsaG040917 MtrunA17_Chr1g0154031 52.874 87 41 0 12 98 76 162 7.43e-29 111
MsaG040917 MtrunA17_Chr3g0099141 49.398 83 42 0 12 94 40 122 1.29e-28 104
MsaG040917 MtrunA17_Chr1g0203441 50.505 99 48 1 1 98 1 99 2.15e-28 107
MsaG040917 MtrunA17_Chr1g0192411 49.438 89 45 0 10 98 10 98 4.36e-28 109
MsaG040917 MtrunA17_Chr2g0327821 49.425 87 44 0 12 98 6 92 1.09e-25 99.8
MsaG040917 MtrunA17_Chr4g0030881 50.000 92 39 1 14 98 9 100 1.17e-25 100
MsaG040917 MtrunA17_Chr7g0247131 69.091 55 17 0 44 98 10 64 1.93e-24 97.1
MsaG040917 MtrunA17_Chr1g0180391 51.724 87 42 0 12 98 19 105 3.88e-24 95.5
MsaG040917 MtrunA17_Chr5g0440781 44.186 86 47 1 14 98 14 99 5.80e-23 91.3
MsaG040917 MtrunA17_Chr5g0425591 42.529 87 49 1 8 93 5 91 1.16e-22 87.8
MsaG040917 MtrunA17_Chr5g0440761 44.186 86 47 1 14 98 14 99 3.70e-22 90.9
MsaG040917 MtrunA17_Chr5g0441141 44.186 86 47 1 14 98 14 99 4.12e-22 90.9
MsaG040917 MtrunA17_Chr6g0454921 46.067 89 39 2 14 98 15 98 3.73e-21 87.0
MsaG040917 MtrunA17_Chr7g0229101 69.091 55 17 0 44 98 4 58 7.62e-21 86.3
MsaG040917 MtrunA17_Chr6g0453751 45.652 92 41 3 11 93 19 110 1.49e-20 83.6
MsaG040917 MtrunA17_Chr5g0441131 32.168 143 87 3 6 139 3 144 2.03e-20 84.3
MsaG040917 MtrunA17_Chr8g0334881 40.909 88 51 1 12 98 10 97 1.84e-19 84.3
MsaG040917 MtrunA17_Chr5g0434901 68.627 51 16 0 48 98 9 59 1.85e-19 80.1
MsaG040917 MtrunA17_Chr4g0008551 47.059 85 44 1 14 98 38 121 3.51e-19 84.0
MsaG040917 MtrunA17_Chr5g0401731 44.944 89 40 2 14 98 15 98 3.94e-19 83.6
MsaG040917 MtrunA17_Chr4g0058991 45.055 91 47 2 9 98 204 292 4.95e-19 84.3
MsaG040917 MtrunA17_Chr4g0053431 47.059 85 44 1 14 98 5 88 5.40e-19 82.4
MsaG040917 MtrunA17_Chr4g0013361 40.909 88 51 1 12 98 10 97 5.60e-19 82.8
MsaG040917 MtrunA17_Chr3g0117511 42.222 90 51 1 9 98 178 266 8.68e-19 83.6
MsaG040917 MtrunA17_Chr5g0429661 42.529 87 49 1 12 98 120 205 1.25e-18 82.8
MsaG040917 MtrunA17_Chr6g0460661 34.109 129 75 2 17 136 19 146 2.26e-18 78.6
MsaG040917 MtrunA17_Chr7g0229131 61.818 55 21 0 44 98 4 58 3.56e-18 78.2
MsaG040917 MtrunA17_Chr3g0133601 44.706 85 46 1 14 98 37 120 6.15e-18 79.0
MsaG040917 MtrunA17_Chr7g0238651 41.379 87 49 1 14 98 7 93 2.35e-16 76.3
MsaG040917 MtrunA17_Chr7g0247141 58.333 48 19 1 1 47 1 48 6.67e-16 69.3
MsaG040917 MtrunA17_Chr7g0238631 42.529 87 49 1 12 98 111 196 1.66e-15 74.3
MsaG040917 MtrunA17_Chr6g0480581 40.000 85 50 1 14 98 4 87 1.95e-15 72.4
MsaG040917 MtrunA17_Chr7g0228531 31.507 146 74 4 10 155 216 335 2.70e-15 73.6
MsaG040917 MtrunA17_Chr6g0460671 32.308 130 78 2 14 134 99 227 7.58e-15 72.0
MsaG040917 MtrunA17_Chr1g0193901 48.077 52 27 0 17 68 17 68 7.63e-15 67.8
MsaG040917 MtrunA17_Chr1g0193891 48.077 52 27 0 17 68 17 68 7.63e-15 67.8
MsaG040917 MtrunA17_Chr1g0193871 48.077 52 27 0 17 68 17 68 7.63e-15 67.8
MsaG040917 MtrunA17_Chr1g0193881 48.077 52 27 0 17 68 17 68 7.63e-15 67.8
MsaG040917 MtrunA17_Chr5g0437321 38.824 85 51 1 14 98 19 102 9.18e-15 71.2
MsaG040917 MtrunA17_Chr5g0417621 37.113 97 55 2 2 98 127 217 1.61e-14 71.2
MsaG040917 MtrunA17_Chr4g0042501 38.824 85 51 1 14 98 105 188 7.29e-14 69.3
MsaG040917 MtrunA17_Chr7g0228401 41.892 74 42 1 25 98 290 362 1.74e-13 68.6
MsaG040917 MtrunA17_Chr1g0177901 41.333 75 43 1 24 98 4 77 2.29e-13 66.2
MsaG040917 MtrunA17_Chr1g0157731 34.483 87 56 1 12 98 89 174 5.20e-13 67.4
MsaG040917 MtrunA17_Chr3g0139671 34.483 87 56 1 12 98 83 168 6.49e-13 67.0
MsaG040917 MtrunA17_Chr3g0125801 41.176 85 49 1 14 98 16 99 1.63e-12 65.1
MsaG040917 MtrunA17_Chr3g0093811 49.091 55 28 0 44 98 14 68 3.52e-12 63.9
MsaG040917 MtrunA17_Chr5g0416341 36.047 86 54 1 13 98 25 109 8.08e-12 63.5
MsaG040917 MtrunA17_Chr5g0397841 37.931 87 53 1 12 98 108 193 9.66e-12 63.2
MsaG040917 MtrunA17_Chr7g0228481 37.079 89 54 2 10 98 216 302 1.12e-11 63.2
MsaG040917 MtrunA17_Chr7g0254261 35.714 98 57 2 1 98 81 172 1.85e-11 62.4
MsaG040917 MtrunA17_Chr8g0362231 32.990 97 64 1 2 98 10 105 1.87e-11 62.4
MsaG040917 MtrunA17_Chr7g0233061 34.066 91 45 3 14 98 180 261 5.78e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040917 AT5G49330.1 72.449 98 27 0 1 98 1 98 1.92e-50 167
MsaG040917 AT3G13540.1 72.632 95 26 0 4 98 15 109 7.16e-50 162
MsaG040917 AT4G38620.1 72.449 98 27 0 1 98 1 98 1.21e-49 163
MsaG040917 AT1G22640.1 71.429 98 28 0 1 98 1 98 1.66e-49 162
MsaG040917 AT2G47460.1 71.429 98 28 0 1 98 1 98 3.40e-49 164
MsaG040917 AT3G23250.1 67.347 98 32 0 1 98 1 98 8.82e-49 160
MsaG040917 AT1G06180.1 67.347 98 32 0 1 98 1 98 2.19e-48 159
MsaG040917 AT4G09460.1 69.388 98 30 0 1 98 1 98 2.72e-48 158
MsaG040917 AT2G16720.1 68.367 98 31 0 1 98 1 98 4.05e-48 159
MsaG040917 AT4G34990.1 54.483 145 59 1 1 138 1 145 7.44e-48 158
MsaG040917 AT2G31180.1 65.306 98 34 0 1 98 1 98 2.55e-47 156
MsaG040917 AT3G62610.1 69.388 98 30 0 1 98 1 98 2.70e-47 159
MsaG040917 AT5G16770.4 67.347 98 32 0 1 98 1 98 2.35e-46 155
MsaG040917 AT5G16770.3 67.347 98 32 0 1 98 1 98 2.35e-46 155
MsaG040917 AT1G35515.1 66.327 98 33 0 1 98 1 98 2.37e-46 152
MsaG040917 AT5G16770.1 67.347 98 32 0 1 98 1 98 4.59e-46 155
MsaG040917 AT5G16770.2 67.347 98 32 0 1 98 1 98 4.59e-46 155
MsaG040917 AT4G21440.1 66.327 98 33 0 1 98 1 98 6.28e-46 155
MsaG040917 AT3G02940.2 66.327 98 33 0 1 98 1 98 9.87e-46 154
MsaG040917 AT3G02940.1 66.327 98 33 0 1 98 1 98 1.76e-45 153
MsaG040917 AT3G02940.3 66.327 98 33 0 1 98 1 98 1.76e-45 153
MsaG040917 AT3G61250.1 63.265 98 36 0 1 98 1 98 1.97e-45 152
MsaG040917 AT4G28110.1 64.286 98 35 0 1 98 1 98 4.86e-45 151
MsaG040917 AT3G01140.2 64.948 97 34 0 1 97 1 97 1.24e-43 149
MsaG040917 AT1G16490.1 47.887 142 63 1 2 132 4 145 1.82e-43 147
MsaG040917 AT5G15310.4 45.714 175 79 3 1 159 1 175 2.22e-43 145
MsaG040917 AT5G15310.1 63.918 97 35 0 1 97 1 97 4.09e-43 147
MsaG040917 AT5G15310.2 63.918 97 35 0 1 97 1 97 5.11e-43 147
MsaG040917 AT4G05100.1 64.646 99 34 1 1 98 1 99 5.38e-43 147
MsaG040917 AT1G08810.1 60.825 97 38 0 1 97 1 97 7.62e-43 145
MsaG040917 AT5G60890.1 61.224 98 38 0 1 98 1 98 4.27e-42 144
MsaG040917 AT1G56160.1 61.856 97 37 0 2 98 4 100 1.09e-41 143
MsaG040917 AT1G79180.1 60.825 97 38 0 2 98 4 100 2.42e-41 142
MsaG040917 AT5G10280.1 60.204 98 39 0 1 98 1 98 2.76e-41 143
MsaG040917 AT3G47600.1 59.794 97 39 0 1 97 1 97 6.00e-41 142
MsaG040917 AT3G01140.1 39.556 225 112 6 4 206 47 269 1.17e-40 142
MsaG040917 AT1G74650.1 59.794 97 39 0 1 97 1 97 1.50e-40 140
MsaG040917 AT1G34670.1 61.224 98 38 0 1 98 1 98 1.77e-40 141
MsaG040917 AT5G62470.2 46.667 150 59 3 1 150 1 129 1.82e-40 141
MsaG040917 AT5G35550.1 68.966 87 27 0 12 98 14 100 3.13e-40 138
MsaG040917 AT4G17785.2 62.626 99 36 1 1 98 1 99 5.92e-40 140
MsaG040917 AT4G17785.1 62.626 99 36 1 1 98 1 99 9.07e-40 139
MsaG040917 AT4G37780.1 57.576 99 41 1 1 98 1 99 1.25e-39 137
MsaG040917 AT1G66230.1 59.184 98 40 0 1 98 1 98 1.54e-39 137
MsaG040917 AT1G74080.1 59.794 97 39 0 1 97 1 97 2.57e-39 137
MsaG040917 AT4G12350.1 45.638 149 74 2 1 142 1 149 2.96e-39 136
MsaG040917 AT5G14340.1 62.245 98 37 0 1 98 13 110 3.71e-39 135
MsaG040917 AT5G62470.1 46.667 150 58 4 1 150 1 128 4.07e-39 137
MsaG040917 AT3G28910.1 58.763 97 40 0 1 97 1 97 5.10e-39 137
MsaG040917 AT5G65230.1 57.143 98 42 0 1 98 1 98 1.35e-38 135
MsaG040917 AT5G16600.1 59.184 98 40 0 1 98 1 98 2.26e-38 135
MsaG040917 AT4G22680.1 58.163 98 41 0 1 98 1 98 2.38e-38 133
MsaG040917 AT1G09540.1 60.204 98 39 0 1 98 1 98 3.38e-38 135
MsaG040917 AT5G07690.1 57.732 97 41 0 1 97 1 97 4.01e-38 134
MsaG040917 AT5G56110.1 59.184 98 40 0 1 98 1 98 5.88e-38 134
MsaG040917 AT5G14750.1 62.353 85 32 0 14 98 18 102 6.21e-38 130
MsaG040917 AT5G61420.2 44.737 152 65 2 1 133 1 152 6.99e-38 134
MsaG040917 AT1G18570.1 60.606 99 38 1 1 98 1 99 2.10e-37 133
MsaG040917 AT1G57560.1 59.184 98 40 0 1 98 1 98 2.29e-37 132
MsaG040917 AT4G01680.3 57.143 98 42 0 1 98 1 98 2.56e-37 130
MsaG040917 AT1G57560.2 59.184 98 40 0 1 98 1 98 3.39e-37 130
MsaG040917 AT3G13890.2 57.143 98 42 0 1 98 1 98 3.46e-37 132
MsaG040917 AT1G74430.1 59.794 97 39 0 1 97 1 97 4.58e-37 130
MsaG040917 AT5G26660.1 59.184 98 40 0 1 98 1 98 5.16e-37 132
MsaG040917 AT5G52600.1 63.218 87 32 0 12 98 12 98 7.74e-37 127
MsaG040917 AT4G01680.1 57.143 98 42 0 1 98 1 98 9.73e-37 131
MsaG040917 AT1G63910.1 55.102 98 44 0 1 98 1 98 1.17e-36 131
MsaG040917 AT5G23000.1 56.566 99 42 1 1 98 1 99 1.72e-36 130
MsaG040917 AT5G65790.1 55.556 99 43 1 1 98 1 99 2.70e-36 130
MsaG040917 AT3G12820.1 57.292 96 41 0 3 98 5 100 2.79e-36 127
MsaG040917 AT5G54230.1 57.143 98 42 0 1 98 1 98 3.22e-36 129
MsaG040917 AT5G40330.1 60.000 85 34 0 14 98 14 98 4.10e-36 126
MsaG040917 AT2G36890.1 56.566 99 42 1 1 98 1 99 4.65e-36 128
MsaG040917 AT3G28470.1 55.102 98 44 0 1 98 1 98 4.93e-36 129
MsaG040917 AT2G36890.2 56.566 99 42 1 1 98 42 140 5.92e-36 129
MsaG040917 AT5G40350.1 64.368 87 31 0 12 98 17 103 6.15e-36 125
MsaG040917 AT5G57620.1 54.545 99 44 1 1 98 1 99 6.55e-36 129
MsaG040917 AT3G49690.1 54.545 99 44 1 1 98 1 99 6.56e-36 128
MsaG040917 AT3G27810.1 63.218 87 32 0 12 98 20 106 7.81e-36 125
MsaG040917 AT1G66370.1 58.163 98 37 1 1 98 1 94 2.44e-35 125
MsaG040917 AT5G07700.1 55.670 97 43 0 1 97 1 97 3.08e-35 127
MsaG040917 AT5G07700.2 55.670 97 43 0 1 97 1 97 3.08e-35 127
MsaG040917 AT5G62320.1 55.769 104 39 1 2 98 3 106 7.72e-35 124
MsaG040917 AT3G27920.1 58.824 85 35 0 14 98 16 100 8.72e-35 123
MsaG040917 AT1G79180.2 45.385 130 38 1 2 98 4 133 1.22e-34 125
MsaG040917 AT2G32460.1 55.682 88 39 0 11 98 17 104 1.67e-34 128
MsaG040917 AT2G32460.2 55.682 88 39 0 11 98 5 92 1.73e-34 127
MsaG040917 AT3G01530.1 60.920 87 34 0 12 98 25 111 1.95e-34 121
MsaG040917 AT3G24310.1 61.364 88 34 0 11 98 17 104 2.65e-34 123
MsaG040917 AT3G13890.1 52.336 107 42 1 1 98 1 107 3.99e-34 125
MsaG040917 AT5G12870.1 58.621 87 36 0 12 98 18 104 5.04e-34 122
MsaG040917 AT1G68320.1 52.991 117 52 1 12 128 19 132 5.17e-34 122
MsaG040917 AT4G13480.1 62.353 85 32 0 14 98 8 92 6.53e-34 122
MsaG040917 AT1G18710.1 54.167 96 44 0 1 96 1 96 7.92e-34 122
MsaG040917 AT3G30210.1 60.227 88 35 0 11 98 26 113 1.00e-33 122
MsaG040917 AT4G01680.2 50.909 110 42 1 1 98 1 110 2.40e-33 122
MsaG040917 AT1G25340.1 63.529 85 31 0 14 98 20 104 2.54e-33 120
MsaG040917 AT3G08500.1 57.143 91 39 0 8 98 26 116 6.32e-33 121
MsaG040917 AT2G47190.1 56.322 87 38 0 12 98 20 106 1.27e-32 119
MsaG040917 AT3G12720.1 53.763 93 43 0 6 98 16 108 1.47e-32 119
MsaG040917 AT1G48000.1 59.551 89 36 0 10 98 30 118 2.04e-32 117
MsaG040917 AT1G56650.1 61.538 91 35 0 8 98 4 94 6.30e-31 114
MsaG040917 AT4G26930.1 52.809 89 42 0 10 98 17 105 6.56e-31 117
MsaG040917 AT1G66380.1 61.538 91 35 0 8 98 4 94 8.06e-31 110
MsaG040917 AT3G11440.2 52.874 87 41 0 12 98 41 127 6.27e-30 115
MsaG040917 AT1G66390.1 61.538 91 35 0 8 98 4 94 9.81e-30 110
MsaG040917 AT5G06100.1 51.136 88 43 0 11 98 31 118 9.90e-30 114
MsaG040917 AT5G55020.1 50.562 89 44 0 10 98 24 112 1.14e-29 115
MsaG040917 AT3G11440.3 52.874 87 41 0 12 98 41 127 1.90e-29 114
MsaG040917 AT3G11440.4 52.874 87 41 0 12 98 41 127 1.90e-29 114
MsaG040917 AT3G11440.1 52.874 87 41 0 12 98 41 127 1.90e-29 114
MsaG040917 AT3G06490.1 62.222 90 34 0 9 98 16 105 2.03e-29 111
MsaG040917 AT5G06100.5 51.136 88 43 0 11 98 31 118 2.97e-29 114
MsaG040917 AT5G06100.2 51.136 88 43 0 11 98 31 118 2.97e-29 114
MsaG040917 AT5G06100.3 51.136 88 43 0 11 98 31 118 2.97e-29 114
MsaG040917 AT5G06100.4 51.136 88 43 0 11 98 31 118 2.97e-29 114
MsaG040917 AT1G25340.2 60.000 85 29 1 14 98 20 99 3.86e-29 110
MsaG040917 AT1G25340.3 60.000 85 29 1 14 98 20 99 6.31e-29 110
MsaG040917 AT2G26960.1 48.889 90 46 0 9 98 17 106 1.46e-28 111
MsaG040917 AT5G49620.1 60.000 90 36 0 9 98 23 112 4.17e-28 107
MsaG040917 AT3G46130.1 51.136 88 43 0 11 98 8 95 1.64e-27 105
MsaG040917 AT5G59780.3 51.765 85 41 0 14 98 10 94 2.86e-27 103
MsaG040917 AT3G53200.1 56.322 87 38 0 12 98 9 95 5.58e-27 103
MsaG040917 AT5G14750.3 72.881 59 13 1 40 98 13 68 1.28e-25 98.2
MsaG040917 AT4G25560.1 50.588 85 42 0 14 98 12 96 1.30e-24 98.2
MsaG040917 AT1G66380.2 55.294 85 38 0 8 92 4 88 1.32e-24 93.6
MsaG040917 AT5G49620.2 51.923 104 36 1 9 98 23 126 1.39e-24 99.0
MsaG040917 AT5G35550.2 77.778 54 12 0 45 98 50 103 1.61e-24 97.4
MsaG040917 AT3G48920.1 45.055 91 50 0 8 98 14 104 9.86e-24 95.5
MsaG040917 AT5G52260.1 50.588 85 42 0 14 98 14 98 1.60e-22 92.4
MsaG040917 AT3G27810.2 70.370 54 16 0 45 98 4 57 5.97e-22 88.6
MsaG040917 AT5G40350.2 70.370 54 16 0 45 98 5 58 2.55e-21 86.7
MsaG040917 AT5G26660.2 64.286 56 20 0 43 98 12 67 5.95e-21 89.0
MsaG040917 AT2G26950.1 38.889 90 55 0 9 98 13 102 1.37e-20 88.6
MsaG040917 AT5G40360.1 40.816 98 57 1 1 98 145 241 6.59e-20 86.7
MsaG040917 AT3G27785.1 32.500 160 86 3 9 168 184 321 7.50e-20 87.0
MsaG040917 AT3G12820.2 63.462 52 19 0 47 98 1 52 4.87e-19 81.3
MsaG040917 AT3G53200.2 62.500 56 21 0 43 98 7 62 1.24e-18 80.5
MsaG040917 AT3G60460.1 39.773 88 52 1 12 98 11 98 2.38e-18 81.6
MsaG040917 AT3G46130.4 50.000 76 34 1 23 98 2 73 4.13e-18 79.7
MsaG040917 AT4G18770.1 43.478 92 47 2 9 98 212 300 4.93e-18 81.6
MsaG040917 AT5G59780.2 60.714 56 22 0 43 98 18 73 5.99e-18 79.0
MsaG040917 AT3G46130.3 60.000 55 22 0 44 98 9 63 7.98e-18 79.0
MsaG040917 AT3G55730.1 47.059 85 44 1 14 98 56 139 8.71e-18 80.9
MsaG040917 AT3G47600.2 62.264 53 20 0 45 97 39 91 3.46e-17 78.6
MsaG040917 AT2G23290.1 45.882 85 45 1 14 98 13 96 3.76e-17 78.6
MsaG040917 AT4G37260.1 34.932 146 73 4 14 158 13 137 3.78e-17 78.6
MsaG040917 AT1G66380.3 69.091 55 17 0 44 98 7 61 3.99e-17 73.9
MsaG040917 AT1G18960.1 41.935 93 48 3 6 98 5 91 4.55e-17 78.2
MsaG040917 AT5G58850.1 30.986 142 79 2 8 149 99 221 4.73e-17 79.0
MsaG040917 AT1G22640.3 78.049 41 9 0 58 98 1 41 5.25e-17 76.3
MsaG040917 AT1G71030.2 64.583 48 17 0 51 98 5 52 6.54e-17 75.5
MsaG040917 AT1G71030.1 64.583 48 17 0 51 98 19 66 9.48e-17 75.5
MsaG040917 AT3G09230.1 35.833 120 50 3 14 129 55 151 1.15e-16 77.8
MsaG040917 AT5G11050.1 42.353 85 48 1 14 98 105 188 1.41e-16 77.8
MsaG040917 AT1G69560.1 40.659 91 53 1 8 98 101 190 3.42e-16 75.9
MsaG040917 AT1G69560.2 40.659 91 53 1 8 98 117 206 4.48e-16 75.9
MsaG040917 AT2G39880.1 43.529 85 47 1 14 98 50 133 4.96e-16 75.9
MsaG040917 AT2G37630.1 42.529 87 48 1 14 98 4 90 5.26e-16 75.9
MsaG040917 AT3G50060.1 30.921 152 76 3 14 155 6 138 8.16e-16 74.7
MsaG040917 AT5G11510.3 40.230 87 51 1 12 98 79 164 1.52e-15 75.1
MsaG040917 AT5G11510.1 40.230 87 51 1 12 98 79 164 1.52e-15 75.1
MsaG040917 AT5G11510.4 40.230 87 51 1 12 98 79 164 1.52e-15 75.1
MsaG040917 AT5G11510.5 40.230 87 51 1 12 98 79 164 1.62e-15 75.1
MsaG040917 AT5G11510.2 40.230 87 51 1 12 98 79 164 1.67e-15 74.7
MsaG040917 AT5G02320.1 39.560 91 46 2 12 98 125 210 2.68e-15 74.3
MsaG040917 AT5G02320.2 39.560 91 46 2 12 98 125 210 2.68e-15 74.3
MsaG040917 AT5G02320.3 39.560 91 46 2 12 98 65 150 3.12e-15 73.9
MsaG040917 AT5G14750.4 68.293 41 13 0 58 98 1 41 6.34e-15 69.3
MsaG040917 AT5G14750.2 68.293 41 13 0 58 98 1 41 6.34e-15 69.3
MsaG040917 AT3G09370.3 33.594 128 58 3 12 135 141 245 7.28e-15 72.8
MsaG040917 AT3G09370.1 33.594 128 58 3 12 135 128 232 7.92e-15 72.8
MsaG040917 AT3G09370.2 33.594 128 58 3 12 135 133 237 9.01e-15 72.8
MsaG040917 AT1G17950.1 41.176 85 49 1 14 98 5 88 9.90e-15 70.9
MsaG040917 AT1G26780.1 41.379 87 50 1 12 98 96 181 1.13e-14 71.2
MsaG040917 AT1G26780.2 41.379 87 50 1 12 98 96 181 1.22e-14 72.0
MsaG040917 AT3G23250.2 65.854 41 14 0 58 98 1 41 3.60e-14 68.9
MsaG040917 AT5G67300.1 39.326 89 45 2 14 98 6 89 1.02e-13 68.9
MsaG040917 AT4G33450.1 36.458 96 55 2 3 98 13 102 1.46e-13 67.8
MsaG040917 AT1G73410.1 43.023 86 46 2 14 98 6 89 8.62e-13 65.5
MsaG040917 AT4G32730.5 34.483 87 56 1 12 98 85 170 8.68e-13 67.0
MsaG040917 AT4G32730.4 34.483 87 56 1 12 98 85 170 8.68e-13 67.0
MsaG040917 AT4G32730.3 34.483 87 56 1 12 98 85 170 8.68e-13 67.0
MsaG040917 AT4G32730.2 34.483 87 56 1 12 98 85 170 8.68e-13 67.0
MsaG040917 AT4G32730.1 34.483 87 56 1 12 98 85 170 9.04e-13 67.0
MsaG040917 AT2G25230.1 34.444 90 58 1 9 98 21 109 1.15e-12 65.1
MsaG040917 AT5G17800.1 40.000 95 51 2 4 98 88 176 1.37e-12 65.9
MsaG040917 AT1G73410.2 43.023 86 46 2 14 98 6 89 2.05e-12 63.9
MsaG040917 AT2G02820.3 37.209 86 53 1 13 98 29 113 3.05e-12 64.7
MsaG040917 AT2G02820.1 37.209 86 53 1 13 98 29 113 5.91e-12 64.3
MsaG040917 AT3G29020.1 35.294 85 54 1 14 98 65 148 6.74e-12 62.8
MsaG040917 AT2G02820.2 37.209 86 53 1 13 98 29 113 7.83e-12 63.9
MsaG040917 AT3G29020.2 35.294 85 54 1 14 98 67 150 8.03e-12 63.5
MsaG040917 AT1G14350.2 36.047 86 54 1 13 98 24 108 9.56e-12 63.5
MsaG040917 AT1G14350.1 36.047 86 54 1 13 98 24 108 9.56e-12 63.5
MsaG040917 AT5G39700.1 40.244 82 47 2 13 93 54 134 1.37e-11 61.2

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGAATGCATTCACTTAT+TGG 0.135589 7:-105154697 MsaT040917.1:CDS
TCCATGAGCTTGAATATATT+TGG 0.157966 7:+105155205 None:intergenic
AAAGTCTTCTTCACCCTTAC+AGG 0.210306 7:+105154493 None:intergenic
ATGTTTCCTCTCTTTATATC+TGG 0.242748 7:+105154745 None:intergenic
TATTATTACTCACGCTAATA+AGG 0.245917 7:+105154192 None:intergenic
TTCTTCACCCTTACAGGCTT+TGG 0.316400 7:+105154499 None:intergenic
CTGGTAATCTTCCCGCAATA+AGG 0.325587 7:+105154662 None:intergenic
CTCCTTGTTGTTCAAAAGTT+GGG 0.343674 7:-105155271 MsaT040917.1:CDS
TTCAAGGTACTATCAGTTCT+TGG 0.362962 7:+105154457 None:intergenic
GAGAGAGACAATGATGGGTT+TGG 0.365978 7:-105154370 MsaT040917.1:CDS
ACTCCTTGTTGTTCAAAAGT+TGG 0.384251 7:-105155272 MsaT040917.1:CDS
ATGATAAGGTCATCTTCTTC+TGG 0.393173 7:+105154718 None:intergenic
TTTATCTACCAAAGCCTGTA+AGG 0.398170 7:-105154507 MsaT040917.1:CDS
ATTCACTTATTGGTAATAGA+TGG 0.418745 7:-105154687 MsaT040917.1:CDS
TGAGTTGTATTCCAAGTTCA+AGG 0.431861 7:+105154441 None:intergenic
ACCAAATATATTCAAGCTCA+TGG 0.438518 7:-105155206 MsaT040917.1:CDS
GTGAATGCATTCTCATGATA+AGG 0.457005 7:+105154704 None:intergenic
GATGACATGGAATGCCAATC+TGG 0.458733 7:-105154304 MsaT040917.1:CDS
TGGTAATCTTCCCGCAATAA+GGG 0.465384 7:+105154663 None:intergenic
AACTGATAGTACCTTGAACT+TGG 0.466248 7:-105154452 MsaT040917.1:CDS
AACAACAAGCCAAGCGGAAG+AGG 0.468583 7:-105154416 MsaT040917.1:CDS
TTTGCTCTTCCTCTTCCGCT+TGG 0.490411 7:+105154407 None:intergenic
CTTATTGCGGGAAGATTACC+AGG 0.506861 7:-105154661 MsaT040917.1:CDS
AATAGATGGTCCCTTATTGC+GGG 0.508874 7:-105154673 MsaT040917.1:CDS
ACAAAAGAGAGAGACAATGA+TGG 0.536178 7:-105154376 MsaT040917.1:CDS
TAATAGATGGTCCCTTATTG+CGG 0.544581 7:-105154674 MsaT040917.1:CDS
GGAACAGTACCATGCAGACT+TGG 0.548293 7:-105154335 MsaT040917.1:CDS
TCTTCTCAAGAAAACCAGAT+TGG 0.548395 7:+105154290 None:intergenic
TATATTCAAGCTCATGGAGA+AGG 0.548578 7:-105155200 MsaT040917.1:CDS
GCATCTTCACGTGAAGTCCA+TGG 0.559783 7:+105155236 None:intergenic
AAGCTCATGGAGAAGGCCAA+TGG 0.567347 7:-105155193 MsaT040917.1:CDS
CTTGGTCAACAATGATGACA+TGG 0.569109 7:-105154317 MsaT040917.1:CDS
TGGGTTTGGATTGTTGTTTG+AGG 0.571835 7:-105154356 MsaT040917.1:CDS
TCAAAAGTTGGGTTGCATAG+AGG 0.572944 7:-105155260 MsaT040917.1:CDS
TTATCTACCAAAGCCTGTAA+GGG 0.582095 7:-105154506 MsaT040917.1:CDS
CATTGTTGACCAAGTCTGCA+TGG 0.585314 7:+105154326 None:intergenic
TTGGGTTGCATAGAGGTCCA+TGG 0.594780 7:-105155253 MsaT040917.1:CDS
CAAAAGAGAGAGACAATGAT+GGG 0.597587 7:-105154375 MsaT040917.1:CDS
CTAAGACCAGATATAAAGAG+AGG 0.606370 7:-105154751 MsaT040917.1:CDS
CTCAGCAACAACAAGCCAAG+CGG 0.628358 7:-105154422 MsaT040917.1:CDS
GATGCAGGGCTTCTTAGATG+TGG 0.659065 7:-105154805 MsaT040917.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 105154201 105155303 105154201 ID=MsaG040917
Chr7 mRNA 105154201 105155303 105154201 ID=MsaT040917.1;Parent=MsaG040917
Chr7 exon 105154201 105154529 105154201 ID=MsaT040917.1.exon3;Parent=MsaT040917.1
Chr7 CDS 105154201 105154529 105154201 ID=cds.MsaT040917.1;Parent=MsaT040917.1
Chr7 exon 105154659 105154820 105154659 ID=MsaT040917.1.exon2;Parent=MsaT040917.1
Chr7 CDS 105154659 105154820 105154659 ID=cds.MsaT040917.1;Parent=MsaT040917.1
Chr7 exon 105155171 105155303 105155171 ID=MsaT040917.1.exon1;Parent=MsaT040917.1
Chr7 CDS 105155171 105155303 105155171 ID=cds.MsaT040917.1;Parent=MsaT040917.1
Gene Sequence

>MsaT040917.1

ATGGGAAGAACTCCTTGTTGTTCAAAAGTTGGGTTGCATAGAGGTCCATGGACTTCACGTGAAGATGCATTGCTCACCAAATATATTCAAGCTCATGGAGAAGGCCAATGGAGATCACTTCCAAAAAGAGCTGGGCTTCTTAGATGTGGAAAAAGTTGCAGACTAAGATGGATGAACTATCTAAGACCAGATATAAAGAGAGGAAACATAACTCCAGAAGAAGATGACCTTATCATGAGAATGCATTCACTTATTGGTAATAGATGGTCCCTTATTGCGGGAAGATTACCAGGACTTTATCTACCAAAGCCTGTAAGGGTGAAGAAGACTTTATCATCAATAATACCAAGAACTGATAGTACCTTGAACTTGGAATACAACTCAGCAACAACAAGCCAAGCGGAAGAGGAAGAGCAAAGAGCAGAAACAAAAGAGAGAGACAATGATGGGTTTGGATTGTTGTTTGAGGAACAGTACCATGCAGACTTGGTCAACAATGATGACATGGAATGCCAATCTGGTTTTCTTGAGAAGATGTATGAAGAGTACTTGCAGCTATTGAAGAATGAAGAAAATCATGAAAAAATACTAGATTCTTCTTTTGCGGAGTCCTTATTAGCGTGA
Protein sequence

>MsaT040917.1

MGRTPCCSKVGLHRGPWTSREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIMRMHSLIGNRWSLIAGRLPGLYLPKPVRVKKTLSSIIPRTDSTLNLEYNSATTSQAEEEEQRAETKERDNDGFGLLFEEQYHADLVNNDDMECQSGFLEKMYEEYLQLLKNEENHEKILDSSFAESLLA*