AlfalfaGEDB | MsaG040954

M. sativa ssp. caerulea / MsaG040954

KEGG: K12133 K12134
GO: GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0042754 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043393 GO:0043433 GO:0043496 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051098 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040954	XP_003626618.2	97.043	744	11	2	36	768	11	754	0.0	1491

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040954	sp\|A0A0G3VTN5\|LHY_PETHY	49.481	770	337	18	38	767	12	769	5.27e-174	521

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040954	tr\|G7L558\|G7L558_MEDTR	97.043	744	11	2	36	768	11	754	0.0	1491

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040954	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG040954	0.829719	7.898356e-55	2.267508e-52
MsaG000115	MsaG040954	0.814845	2.164355e-51	4.167572e-49
MsaG000180	MsaG040954	0.841417	8.928627e-58	3.644677e-55
MsaG000250	MsaG040954	0.817164	6.609200e-52	1.350148e-49
MsaG000327	MsaG040954	0.847794	1.744705e-59	8.775172e-57
MsaG000352	MsaG040954	0.809102	3.809873e-50	6.366824e-48
MsaG000359	MsaG040954	0.809318	3.426551e-50	5.755622e-48
MsaG000368	MsaG040954	0.812754	6.220331e-51	1.136585e-48
MsaG000439	MsaG040954	0.864268	2.737901e-64	2.512248e-61
MsaG000514	MsaG040954	0.809149	3.722484e-50	6.227781e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040954	MtrunA17_Chr7g0276421	97.043	744	11	2	36	768	11	754	0.0	1491
MsaG040954	MtrunA17_Chr3g0109791	64.815	108	33	3	34	138	40	145	1.75e-30	123
MsaG040954	MtrunA17_Chr5g0433851	72.043	93	24	1	41	133	34	124	6.17e-30	123
MsaG040954	MtrunA17_Chr6g0469431	46.457	127	50	3	23	141	15	131	1.78e-29	117
MsaG040954	MtrunA17_Chr1g0181771	51.961	102	37	2	40	139	37	128	3.39e-29	118
MsaG040954	MtrunA17_Chr8g0348391	53.000	100	37	1	41	140	55	144	8.17e-29	118
MsaG040954	MtrunA17_Chr6g0481061	71.579	95	25	1	40	134	47	139	1.01e-28	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040954	AT1G01060.4	44.430	754	267	23	41	767	15	643	4.51e-122	380
MsaG040954	AT1G01060.8	44.503	755	266	24	41	767	15	644	4.89e-122	380
MsaG040954	AT1G01060.2	44.503	755	266	24	41	767	15	644	4.89e-122	380
MsaG040954	AT1G01060.3	44.503	755	266	24	41	767	15	644	4.89e-122	380
MsaG040954	AT1G01060.1	44.503	755	266	24	41	767	15	644	4.89e-122	380
MsaG040954	AT1G01060.7	44.503	755	266	24	41	767	15	644	4.89e-122	380
MsaG040954	AT2G46830.1	37.500	752	289	30	36	763	9	603	5.18e-82	274
MsaG040954	AT1G01060.6	40.254	708	270	24	88	767	60	642	6.59e-78	264
MsaG040954	AT1G01060.5	40.254	708	270	24	88	767	60	642	6.59e-78	264
MsaG040954	AT2G46830.3	39.901	406	182	17	374	763	162	521	2.06e-44	168

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Find 178 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATTAACAGTCCTCA+AGG	0.540476	7:+105520250	MsaT040954.1:CDS
AAACACACACAAAAGAACGA+TGG	0.697228	7:+105520458	MsaT040954.1:CDS
AAACCTCCTTGAGAGCAAGC+AGG	0.579136	7:-105520977	None:intergenic
AAACTTAAGACTCGTCGAAC+AGG	0.401478	7:+105521922	MsaT040954.1:CDS
AAATGCATTTCTTGCTCTCA+AGG	0.445522	7:-105521813	None:intergenic
AACTTAAGACTCGTCGAACA+GGG	0.627230	7:+105521923	MsaT040954.1:CDS
AAGACATGTTGAGAAAGGAT+TGG	0.586137	7:-105520838	None:intergenic
AAGAGGATACGCCTGGAAGG+GGG	0.554626	7:+105522030	MsaT040954.1:CDS
AAGATGTTTAGTAGAGGCCA+AGG	0.570129	7:+105521960	MsaT040954.1:CDS
AAGTGAAAATCAAAATAACA+TGG	0.654350	7:+105520751	MsaT040954.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	105511762	105522065	105511762	ID=MsaG040954
Chr7	mRNA	105511762	105522065	105511762	ID=MsaT040954.1;Parent=MsaG040954
Chr7	exon	105511762	105511852	105511762	ID=MsaT040954.1.exon1;Parent=MsaT040954.1
Chr7	CDS	105511762	105511852	105511762	ID=cds.MsaT040954.1;Parent=MsaT040954.1
Chr7	exon	105512369	105512394	105512369	ID=MsaT040954.1.exon2;Parent=MsaT040954.1
Chr7	CDS	105512369	105512394	105512369	ID=cds.MsaT040954.1;Parent=MsaT040954.1
Chr7	exon	105512875	105512986	105512875	ID=MsaT040954.1.exon3;Parent=MsaT040954.1
Chr7	CDS	105512875	105512986	105512875	ID=cds.MsaT040954.1;Parent=MsaT040954.1
Chr7	exon	105513063	105513124	105513063	ID=MsaT040954.1.exon4;Parent=MsaT040954.1
Chr7	CDS	105513063	105513124	105513063	ID=cds.MsaT040954.1;Parent=MsaT040954.1
Chr7	exon	105519878	105520102	105519878	ID=MsaT040954.1.exon5;Parent=MsaT040954.1
Chr7	CDS	105519878	105520102	105519878	ID=cds.MsaT040954.1;Parent=MsaT040954.1
Chr7	exon	105520191	105521621	105520191	ID=MsaT040954.1.exon6;Parent=MsaT040954.1
Chr7	CDS	105520191	105521621	105520191	ID=cds.MsaT040954.1;Parent=MsaT040954.1
Chr7	exon	105521706	105522065	105521706	ID=MsaT040954.1.exon7;Parent=MsaT040954.1
Chr7	CDS	105521706	105522065	105521706	ID=cds.MsaT040954.1;Parent=MsaT040954.1

Gene Sequence

>MsaT040954.1

ATGCCACGTAAGCAAAGAAGCGTTGGGTCCACAATTGACAGCTGGCAGACACTTTTTTACGGACGAAATCCCATGGCCTCTGAGTTTGTGGGTTTTGGTGCTGTGGACTTCGTTTTGACAAGAAAGCCATATACAATCACAAAACAAAGAGAACGTTGGACAGATGACGAACATAATCGATTTCTAGAAGCCCTCAAGCTATATGGCCGAGCATGGCAGCGTATAGAAGAACATATAGGAACAAAGACTGCTGTGCAAATCAGGAGCCATGCGCAAAAATTCTTTTCAAAGTTGGAGAAGGAAGCACTTGTAAAAGGTGCTGCATTAGGACAAGCTCTTGACATAGACATTCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCTTATCCTCGCAAGACCAATGTTGGTACCCCAACATTACATAGTGGAGCAAAGTATGGAAAGCCACTTATTGCAATTGCATCTTCACACGGTAAACAAGCAATGGATTTTGAGAAAGAATCACTTCTAGAGGAGCATAAAGATGAGGAAAGGCCAACGACGGTAAAAGAAAATAACGATGAAAATTGTTTAAAAGTATTAACAGTCCTCAAGGAGGCACCCTGTTCATCTGTATCTTCGGCAATCAAGAGTTCAATCTCAATGTCAGTGCCACAGACAAATTCCTGCACCATAAGGGGGTTTACACCTTCAGTGAAAGAGGTAATAACACGAGATGAAACAAATGAATCTTTTCCTACTACTGAGATTGAAAACCAGATGTTGAAGATAGATGATGGCAAACACACACAAAAGAACGATGGCATTTGTCGAACCTCTAAGTTGGAGAATTGTTCTCCGAAATCGGTTCAATCCGAGAAAACAGATGGTCTTACTTCTGCATTAACAGTTGATGAGATGCAAAGTAATCAGAATTACCCAAGACATATCACTGTGCACGTTGTTGATGGGAACTTTGGAACTAGTATTCAAAGTCCATCACAAAATATGTTGATTCAAGACTCTACATTTCAGCCAATAGGAGGGGGTAATGTGCAGCCTAATCTCTTCGCAAATCCAGCTGCATCAAACACAAGTGAAAATCAAAATAACATGGCACGATCCTCTAGTCATCAATCATTTCCTCCTTGTCCTCCATTTGCACATAACCATGCTGATTACCAATCCTTTCTCAACATGTCTTCTACATTTTCAAGTCTTATTGTCTCTACCTTGCTGCAACACCCTGCAGCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCGTATGCAAATGTAGAATCTTCAGCTGATTCTCCTGCTTGCTCTCAAGGAGGTTTCTCATCTAGACAAATTGGTTCACCTCCTAGTGTAACAGCTATTGCAGCTGCTACAGTAGCTGCTGCAACTGCATGGTGGGCAGCTCATGGACTGCTTCCTGTGTGCGCTCCACTCCAGACAGCTTTTGCCTGTCCTCCTGCATCAACAACTGTAGCTCCATCAACAAATATTAGTAAACAACCACCTAAGACAGATCAAGGAGATATTACACTACAAAATCCTCCTCTGCAAGATCAGTTACTAGATCCAGAAAACTCAGAAGCTTTGCAAGCTCAACATTCAGGTTCTAAGTCACCAGCTGTTTCTTCATCTGAATCAGAGGAGAGTGGAGATGCTAAGTTAAATACTTCATCAAAGGCCACTATTAATCTTGATATAAACCAACCAGTTTCTGAGAACCCTGATTCCAACAAAATGGAGGGCAGAAAACTGATAGACCGGTCTTCTTGTGGTTCCAACACAACCTCTAGCTGTGAAGAGACTGATGCGCTAGAGAAGGATGAGAAAGAAAAGGAAGAATGTAAAATACCTGATGCGGATCATTTAGCTACTGATCCTAGTAGTCGTCGATATAGAAGCATTAGCAACCTTCTTGATTCTTGGAAGGAGGTGTCTGAAGAGGGACGACTTGCCTTTCGGGCTCTATTCTCCAGAGAGGTGTTGCCCCAAAGCTTTTCACCTCCTCATGATTTGATAAATAAGGATAATCAGATGGACAACAAAGATCACCTTGAGAGCAAGAAATGCATTTGTAATTGTGACCAGGCACAGCAAAACCTACCATTTGTACAAAATAACAATGAGGAGGGATTTCTAACCATGGGTCTTGGACAAGGTAAACTTAAGACTCGTCGAACAGGGTTCAAACCTTACAAAAGATGTTTAGTAGAGGCCAAGGAAAGCAGGGGCGGAACGGCTTGCAACCAAGTTGAAGAGACGGGTCCCAAGAGGATACGCCTGGAAGGGGGGACTTCTATTTGA

Protein sequence

>MsaT040954.1

MPRKQRSVGSTIDSWQTLFYGRNPMASEFVGFGAVDFVLTRKPYTITKQRERWTDDEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGAALGQALDIDIPPPRPKRKPSNPYPRKTNVGTPTLHSGAKYGKPLIAIASSHGKQAMDFEKESLLEEHKDEERPTTVKENNDENCLKVLTVLKEAPCSSVSSAIKSSISMSVPQTNSCTIRGFTPSVKEVITRDETNESFPTTEIENQMLKIDDGKHTQKNDGICRTSKLENCSPKSVQSEKTDGLTSALTVDEMQSNQNYPRHITVHVVDGNFGTSIQSPSQNMLIQDSTFQPIGGGNVQPNLFANPAASNTSENQNNMARSSSHQSFPPCPPFAHNHADYQSFLNMSSTFSSLIVSTLLQHPAAHAAASFAATFWPYANVESSADSPACSQGGFSSRQIGSPPSVTAIAAATVAAATAWWAAHGLLPVCAPLQTAFACPPASTTVAPSTNISKQPPKTDQGDITLQNPPLQDQLLDPENSEALQAQHSGSKSPAVSSSESEESGDAKLNTSSKATINLDINQPVSENPDSNKMEGRKLIDRSSCGSNTTSSCEETDALEKDEKEKEECKIPDADHLATDPSSRRYRSISNLLDSWKEVSEEGRLAFRALFSREVLPQSFSPPHDLINKDNQMDNKDHLESKKCICNCDQAQQNLPFVQNNNEEGFLTMGLGQGKLKTRRTGFKPYKRCLVEAKESRGGTACNQVEETGPKRIRLEGGTSI*