Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040958 | XP_013450620.1 | 79.089 | 483 | 57 | 13 | 1 | 465 | 1 | 457 | 0.0 | 601 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040958 | sp|O82799|NGA1_ARATH | 43.605 | 344 | 76 | 13 | 90 | 412 | 6 | 252 | 2.07e-68 | 223 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040958 | tr|A0A072U667|A0A072U667_MEDTR | 79.089 | 483 | 57 | 13 | 1 | 465 | 1 | 457 | 0.0 | 601 |
Gene ID | Type | Classification |
---|---|---|
MsaG040958 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040958 | MtrunA17_Chr7g0276471 | 79.089 | 483 | 57 | 13 | 1 | 465 | 1 | 457 | 0.0 | 601 |
MsaG040958 | MtrunA17_Chr8g0345771 | 43.925 | 428 | 166 | 15 | 58 | 457 | 127 | 508 | 9.70e-90 | 282 |
MsaG040958 | MtrunA17_Chr1g0178071 | 64.179 | 134 | 41 | 3 | 91 | 219 | 50 | 181 | 5.84e-49 | 170 |
MsaG040958 | MtrunA17_Chr7g0266821 | 74.257 | 101 | 23 | 2 | 118 | 218 | 65 | 162 | 1.71e-45 | 160 |
MsaG040958 | MtrunA17_Chr5g0422501 | 64.957 | 117 | 31 | 2 | 110 | 218 | 232 | 346 | 9.65e-44 | 159 |
MsaG040958 | MtrunA17_Chr1g0198661 | 61.789 | 123 | 32 | 2 | 110 | 219 | 188 | 308 | 1.35e-42 | 155 |
MsaG040958 | MtrunA17_Chr1g0213701 | 47.107 | 121 | 52 | 2 | 81 | 201 | 138 | 246 | 4.22e-29 | 115 |
MsaG040958 | MtrunA17_Chr2g0282961 | 39.091 | 110 | 66 | 1 | 94 | 202 | 138 | 247 | 8.20e-15 | 77.0 |
MsaG040958 | MtrunA17_Chr4g0012861 | 40.659 | 91 | 49 | 3 | 113 | 201 | 314 | 401 | 5.02e-14 | 74.7 |
MsaG040958 | MtrunA17_Chr2g0281191 | 38.679 | 106 | 57 | 4 | 113 | 216 | 352 | 451 | 1.54e-13 | 73.2 |
MsaG040958 | MtrunA17_Chr5g0432721 | 37.363 | 91 | 52 | 3 | 113 | 201 | 321 | 408 | 1.77e-13 | 72.8 |
MsaG040958 | MtrunA17_Chr3g0107701 | 39.560 | 91 | 50 | 3 | 113 | 201 | 338 | 425 | 5.34e-13 | 71.6 |
MsaG040958 | MtrunA17_Chr4g0046371 | 39.000 | 100 | 60 | 1 | 104 | 202 | 138 | 237 | 8.59e-13 | 70.5 |
MsaG040958 | MtrunA17_Chr7g0244871 | 38.889 | 90 | 50 | 3 | 113 | 200 | 12 | 98 | 9.65e-13 | 64.3 |
MsaG040958 | MtrunA17_Chr4g0029671 | 36.111 | 108 | 68 | 1 | 112 | 218 | 164 | 271 | 3.34e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040958 | AT2G46870.1 | 43.605 | 344 | 76 | 13 | 90 | 412 | 6 | 252 | 2.10e-69 | 223 |
MsaG040958 | AT1G01030.2 | 75.781 | 128 | 30 | 1 | 109 | 235 | 51 | 178 | 1.02e-62 | 207 |
MsaG040958 | AT1G01030.1 | 79.339 | 121 | 24 | 1 | 109 | 228 | 51 | 171 | 4.86e-61 | 203 |
MsaG040958 | AT3G61970.1 | 63.226 | 155 | 50 | 3 | 95 | 244 | 4 | 156 | 2.29e-58 | 194 |
MsaG040958 | AT4G01500.1 | 41.250 | 320 | 95 | 12 | 110 | 413 | 32 | 274 | 8.00e-58 | 194 |
MsaG040958 | AT3G11580.4 | 63.492 | 126 | 33 | 2 | 105 | 219 | 20 | 143 | 1.78e-50 | 171 |
MsaG040958 | AT3G11580.2 | 63.492 | 126 | 33 | 2 | 105 | 219 | 20 | 143 | 1.78e-50 | 171 |
MsaG040958 | AT3G11580.5 | 63.492 | 126 | 33 | 2 | 105 | 219 | 20 | 143 | 1.78e-50 | 171 |
MsaG040958 | AT3G11580.1 | 63.492 | 126 | 33 | 2 | 105 | 219 | 20 | 143 | 4.87e-50 | 171 |
MsaG040958 | AT3G11580.3 | 64.000 | 125 | 32 | 2 | 105 | 218 | 20 | 142 | 6.60e-49 | 172 |
MsaG040958 | AT2G36080.4 | 69.231 | 117 | 31 | 2 | 106 | 219 | 30 | 144 | 1.39e-47 | 162 |
MsaG040958 | AT2G36080.2 | 69.231 | 117 | 31 | 2 | 106 | 219 | 30 | 144 | 1.39e-47 | 162 |
MsaG040958 | AT2G36080.1 | 69.231 | 117 | 31 | 2 | 106 | 219 | 30 | 144 | 1.99e-47 | 164 |
MsaG040958 | AT2G36080.3 | 69.231 | 117 | 31 | 2 | 106 | 219 | 30 | 144 | 2.03e-47 | 164 |
MsaG040958 | AT5G06250.5 | 65.546 | 119 | 29 | 2 | 110 | 218 | 42 | 158 | 2.28e-47 | 164 |
MsaG040958 | AT5G06250.4 | 65.546 | 119 | 29 | 2 | 110 | 218 | 42 | 158 | 3.48e-47 | 164 |
MsaG040958 | AT5G06250.2 | 65.546 | 119 | 29 | 2 | 110 | 218 | 42 | 158 | 3.66e-47 | 164 |
MsaG040958 | AT1G13260.1 | 71.429 | 112 | 29 | 2 | 111 | 221 | 185 | 294 | 3.70e-47 | 166 |
MsaG040958 | AT1G68840.2 | 69.828 | 116 | 31 | 3 | 106 | 219 | 180 | 293 | 3.96e-47 | 166 |
MsaG040958 | AT1G68840.1 | 69.828 | 116 | 31 | 3 | 106 | 219 | 180 | 293 | 3.96e-47 | 166 |
MsaG040958 | AT5G06250.1 | 65.546 | 119 | 29 | 2 | 110 | 218 | 42 | 158 | 6.93e-47 | 163 |
MsaG040958 | AT5G06250.3 | 65.000 | 120 | 30 | 2 | 110 | 219 | 42 | 159 | 7.79e-47 | 163 |
MsaG040958 | AT1G25560.1 | 62.295 | 122 | 36 | 2 | 106 | 219 | 187 | 306 | 7.55e-44 | 158 |
MsaG040958 | AT3G25730.1 | 59.524 | 126 | 42 | 3 | 101 | 219 | 166 | 289 | 8.71e-44 | 157 |
MsaG040958 | AT1G50680.1 | 50.000 | 100 | 39 | 2 | 112 | 200 | 155 | 254 | 6.51e-26 | 108 |
MsaG040958 | AT1G51120.1 | 49.485 | 97 | 41 | 1 | 112 | 200 | 176 | 272 | 1.90e-24 | 104 |
MsaG040958 | AT2G30470.1 | 39.560 | 91 | 50 | 3 | 113 | 201 | 294 | 381 | 8.85e-14 | 74.3 |
MsaG040958 | AT4G32010.1 | 40.000 | 95 | 52 | 3 | 113 | 205 | 285 | 376 | 8.87e-14 | 74.3 |
MsaG040958 | AT4G32010.2 | 40.000 | 95 | 52 | 3 | 113 | 205 | 281 | 372 | 9.66e-14 | 74.3 |
MsaG040958 | AT4G21550.1 | 36.283 | 113 | 64 | 4 | 113 | 224 | 327 | 432 | 4.45e-13 | 72.0 |
MsaG040958 | AT4G21550.2 | 36.283 | 113 | 64 | 4 | 113 | 224 | 327 | 432 | 1.13e-12 | 70.5 |
MsaG040958 | AT4G21550.3 | 36.283 | 113 | 64 | 4 | 113 | 224 | 327 | 432 | 2.18e-12 | 69.7 |
MsaG040958 | AT2G33860.1 | 41.304 | 92 | 53 | 1 | 112 | 202 | 157 | 248 | 5.89e-12 | 68.2 |
MsaG040958 | AT1G35240.1 | 36.893 | 103 | 59 | 2 | 114 | 210 | 126 | 228 | 3.82e-11 | 65.9 |
MsaG040958 | AT2G33860.2 | 40.659 | 91 | 53 | 1 | 113 | 202 | 1 | 91 | 5.35e-11 | 65.1 |
Find 141 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTTCGATCTTCAAAATTT+AGG | 0.195221 | 7:-105575008 | None:intergenic |
TTCAGTGGTGCCGGCGATAT+TGG | 0.224155 | 7:-105575929 | None:intergenic |
GGAAAACGACTGAGACTATT+TGG | 0.226531 | 7:+105575741 | MsaT040958.1:CDS |
CCCTCTTCTACAACAACTTC+TGG | 0.253546 | 7:+105575843 | MsaT040958.1:CDS |
GTAGAAGGGGCAGCGTAATT+AGG | 0.294314 | 7:-105575378 | None:intergenic |
AACTTCGCTGCACTTTGATT+TGG | 0.298974 | 7:+105575893 | MsaT040958.1:CDS |
TACTTCTCTGCGTGCTGCTT+TGG | 0.305864 | 7:-105574946 | None:intergenic |
ATGGTAAGATGTGGCGGTTC+AGG | 0.308215 | 7:+105575028 | MsaT040958.1:CDS |
GAATCAATTATCATATTCAT+AGG | 0.331308 | 7:-105575672 | None:intergenic |
GGCGGTTCAGGTATTCATAT+TGG | 0.345717 | 7:+105575040 | MsaT040958.1:CDS |
GTGGTTGATGGTGGCGTAAT+TGG | 0.354445 | 7:-105575567 | None:intergenic |
TGAAGAGGAGGTAGATTTGA+TGG | 0.354882 | 7:+105574726 | MsaT040958.1:CDS |
TCAGTGGTGCCGGCGATATT+GGG | 0.365725 | 7:-105575928 | None:intergenic |
AAAGGCAGTGGAGGAGGAGG+AGG | 0.366186 | 7:-105575264 | None:intergenic |
CGCAGAGAAGTACTTCCCTT+TGG | 0.372478 | 7:+105574957 | MsaT040958.1:CDS |
GAAAACGACTGAGACTATTT+GGG | 0.373722 | 7:+105575742 | MsaT040958.1:CDS |
TGAGGATGAGATATTGTAGA+AGG | 0.383802 | 7:-105575393 | None:intergenic |
AAAGGATGAGGAGGAGGAGG+AGG | 0.387884 | 7:+105574828 | MsaT040958.1:CDS |
CAGAGTTATGTGATGACAAA+AGG | 0.396646 | 7:+105575072 | MsaT040958.1:CDS |
TAGAAAGGCAGTGGAGGAGG+AGG | 0.402946 | 7:-105575267 | None:intergenic |
TAGGAAGGTGAGAGTATTGA+GGG | 0.405354 | 7:-105575353 | None:intergenic |
AGATAGAAAGGCAGTGGAGG+AGG | 0.405784 | 7:-105575270 | None:intergenic |
CCACCAGCTGTGGTGGTTGA+TGG | 0.413549 | 7:-105575579 | None:intergenic |
AAGGGCAATGACGAAGGATT+AGG | 0.420096 | 7:+105574781 | MsaT040958.1:CDS |
GGGGCAGCGTAATTAGGATT+AGG | 0.420563 | 7:-105575372 | None:intergenic |
AATCATCACTATTCATCATA+TGG | 0.429981 | 7:+105575300 | MsaT040958.1:CDS |
GACGAAGGATTAGGAGGAAT+AGG | 0.436627 | 7:+105574790 | MsaT040958.1:CDS |
TTGATGGAGTTAAGACTTGG+AGG | 0.438088 | 7:+105574742 | MsaT040958.1:CDS |
GAGGGTGGAAGTTGACGATT+AGG | 0.443967 | 7:-105575825 | None:intergenic |
CCTCTTCTACAACAACTTCT+GGG | 0.444861 | 7:+105575844 | MsaT040958.1:CDS |
GACACAGATTGTACATAGAT+TGG | 0.447780 | 7:+105575175 | MsaT040958.1:CDS |
GATATTGAGGGATGAGGTGG+TGG | 0.450649 | 7:-105575242 | None:intergenic |
GGAAGATAGAAAGGCAGTGG+AGG | 0.452590 | 7:-105575273 | None:intergenic |
GCGAGGAGGTGAGATAATAG+AGG | 0.457021 | 7:-105575545 | None:intergenic |
GGAGGAAGATAGAAAGGCAG+TGG | 0.458358 | 7:-105575276 | None:intergenic |
CCGCGGTGATGATGTGCAAC+TGG | 0.459480 | 7:-105575699 | None:intergenic |
ATCATGATCAACATCACATA+GGG | 0.468716 | 7:+105575868 | MsaT040958.1:CDS |
AGGTGATCAGCAGCAGGAGC+AGG | 0.469663 | 7:-105575486 | None:intergenic |
GATTCTTCTACCAACGAGAA+AGG | 0.473959 | 7:+105574979 | MsaT040958.1:CDS |
GAGTTAAGACTTGGAGGAGG+GGG | 0.479014 | 7:+105574748 | MsaT040958.1:CDS |
TGGAGTTAAGACTTGGAGGA+GGG | 0.479526 | 7:+105574746 | MsaT040958.1:CDS |
AAGGGTATTGTTCTGATAGC+AGG | 0.479960 | 7:+105574199 | MsaT040958.1:CDS |
CGGCGATATTGGGAATTAGA+AGG | 0.483289 | 7:-105575918 | None:intergenic |
CGAGGAGGTGAGATAATAGA+GGG | 0.488870 | 7:-105575544 | None:intergenic |
GATTTGATGGAGTTAAGACT+TGG | 0.489573 | 7:+105574739 | MsaT040958.1:CDS |
GATGATATCATCGCAATCAC+TGG | 0.492831 | 7:+105574243 | MsaT040958.1:CDS |
TATGATGAATAGTGATGATT+GGG | 0.494045 | 7:-105575297 | None:intergenic |
GAGGAGGAGGAGGATATTGA+GGG | 0.497580 | 7:-105575254 | None:intergenic |
TTAGGAAGGTGAGAGTATTG+AGG | 0.500486 | 7:-105575354 | None:intergenic |
CAGCAGCAGGAGCAGGGTGG+TGG | 0.502611 | 7:-105575479 | None:intergenic |
TTCAAAGGATGAGGAGGAGG+AGG | 0.506022 | 7:+105574825 | MsaT040958.1:CDS |
GAGGATGAGATATTGTAGAA+GGG | 0.507152 | 7:-105575392 | None:intergenic |
CCACCATCAACCACCACAGC+TGG | 0.507318 | 7:+105575576 | MsaT040958.1:CDS |
ATTCTTCTACCAACGAGAAA+GGG | 0.509922 | 7:+105574980 | MsaT040958.1:CDS |
ATATGATGAATAGTGATGAT+TGG | 0.513248 | 7:-105575298 | None:intergenic |
TTCTTCAAATTCAAAGGATG+AGG | 0.513842 | 7:+105574816 | MsaT040958.1:CDS |
GTTTCTTCTCCTTAACGAAA+CGG | 0.517535 | 7:-105575101 | None:intergenic |
TTCTTCTTCAGCACCACCAC+AGG | 0.518188 | 7:+105575794 | MsaT040958.1:CDS |
AGGATGTTCTTCAAATTCAA+AGG | 0.518491 | 7:+105574810 | MsaT040958.1:CDS |
AGGGTGGAGCCGTTTCGTTA+AGG | 0.519476 | 7:+105575092 | MsaT040958.1:CDS |
TTTCAGGGATCCGTGGTGCA+AGG | 0.522724 | 7:+105575618 | MsaT040958.1:CDS |
TGATTGGGAGGAAGATAGAA+AGG | 0.523415 | 7:-105575282 | None:intergenic |
ATTTGATGGAACAAGTGAAA+GGG | 0.525706 | 7:+105574181 | None:intergenic |
AGGATGAGATATTGTAGAAG+GGG | 0.527536 | 7:-105575391 | None:intergenic |
AAATTGTTGTTGTAATATTG+AGG | 0.530975 | 7:-105575411 | None:intergenic |
GAGACTATTTGGGGTTAACA+TGG | 0.535206 | 7:+105575752 | MsaT040958.1:CDS |
GATATGATCTTCAGTGGTGC+CGG | 0.535398 | 7:-105575938 | None:intergenic |
ATGGAGTTAAGACTTGGAGG+AGG | 0.540445 | 7:+105574745 | MsaT040958.1:CDS |
AGAGCATATGTTTGATAAAG+CGG | 0.543449 | 7:+105574882 | MsaT040958.1:CDS |
GGAGTTAAGACTTGGAGGAG+GGG | 0.544084 | 7:+105574747 | MsaT040958.1:CDS |
TTCAGGGATCCGTGGTGCAA+GGG | 0.545428 | 7:+105575619 | MsaT040958.1:CDS |
CGTTGGTAGAAGAATCCAAA+GGG | 0.545569 | 7:-105574972 | None:intergenic |
AGGGTTACAGACGTCACAGC+TGG | 0.549480 | 7:+105574657 | MsaT040958.1:intron |
GAGGATATTGAGGGATGAGG+TGG | 0.549967 | 7:-105575245 | None:intergenic |
TTCAAATTCAAAGGATGAGG+AGG | 0.550070 | 7:+105574819 | MsaT040958.1:CDS |
TGTACATAGATTGGAGGCCA+AGG | 0.550302 | 7:+105575184 | MsaT040958.1:CDS |
CCCAGAAGTTGTTGTAGAAG+AGG | 0.550466 | 7:-105575844 | None:intergenic |
AAATTCAAAGGATGAGGAGG+AGG | 0.551226 | 7:+105574822 | MsaT040958.1:CDS |
AATTTGATGGAACAAGTGAA+AGG | 0.556860 | 7:+105574180 | None:intergenic |
TTCAGCTTCCCTACGTCACT+AGG | 0.557671 | 7:-105574910 | None:intergenic |
CACTATTCATCATATGGTGG+TGG | 0.562154 | 7:+105575306 | MsaT040958.1:CDS |
AGAGTTATGTGATGACAAAA+GGG | 0.563519 | 7:+105575073 | MsaT040958.1:CDS |
GAGGAGGATATTGAGGGATG+AGG | 0.567145 | 7:-105575248 | None:intergenic |
GGCAATGACGAAGGATTAGG+AGG | 0.574623 | 7:+105574784 | MsaT040958.1:CDS |
TTAACAAGGTGATCAGCAGC+AGG | 0.575298 | 7:-105575492 | None:intergenic |
TGTGCAATTCAGCACGTCCA+CGG | 0.575558 | 7:-105575152 | None:intergenic |
ATCATCGCAATCACTGGAGG+AGG | 0.576968 | 7:+105574249 | MsaT040958.1:CDS |
CCAGAAGTTGTTGTAGAAGA+GGG | 0.577780 | 7:-105575843 | None:intergenic |
AATCAATTATCATATTCATA+GGG | 0.579857 | 7:-105575671 | None:intergenic |
TGATAGCAGGGACGAAGAGG+AGG | 0.581064 | 7:+105574212 | MsaT040958.1:CDS |
GAGTACTGAGAGTGTGCCCT+TGG | 0.581237 | 7:-105575201 | None:intergenic |
CTTCTAATTCCCAATATCGC+CGG | 0.581436 | 7:+105575919 | MsaT040958.1:CDS |
TTAGGCATTGCCGCCTGTGG+TGG | 0.586107 | 7:-105575807 | None:intergenic |
GATCATGATCAACATCACAT+AGG | 0.586128 | 7:+105575867 | MsaT040958.1:CDS |
TTCTGATAGCAGGGACGAAG+AGG | 0.587446 | 7:+105574209 | MsaT040958.1:CDS |
CACACCACCACCAGCTGTGG+TGG | 0.589837 | 7:-105575586 | None:intergenic |
TGGGAAGTTGAATGAAGAGG+AGG | 0.590300 | 7:+105574714 | MsaT040958.1:CDS |
CACCACAGCTGGTGGTGGTG+TGG | 0.591127 | 7:+105575587 | MsaT040958.1:CDS |
GGTGATCAGCAGCAGGAGCA+GGG | 0.594253 | 7:-105575485 | None:intergenic |
AAGGTGAGAGTATTGAGGGG+AGG | 0.594874 | 7:-105575349 | None:intergenic |
AAGGAGAAGAAACTTGATGC+TGG | 0.595535 | 7:+105575111 | MsaT040958.1:CDS |
AGGGTATTGTTCTGATAGCA+GGG | 0.599445 | 7:+105574200 | MsaT040958.1:CDS |
ATCCACACCACCACCAGCTG+TGG | 0.603339 | 7:-105575589 | None:intergenic |
ACAGATTGTACATAGATTGG+AGG | 0.603584 | 7:+105575178 | MsaT040958.1:CDS |
TAGTATTAACATTGCCTCCG+CGG | 0.604612 | 7:-105575716 | None:intergenic |
TAGGAGAAGCCCTTTCTCGT+TGG | 0.605407 | 7:-105574989 | None:intergenic |
CGGTGACACCTAGTGACGTA+GGG | 0.607439 | 7:+105574902 | MsaT040958.1:CDS |
CGATTAGGCATTGCCGCCTG+TGG | 0.607948 | 7:-105575810 | None:intergenic |
CCATCAACCACCACAGCTGG+TGG | 0.608577 | 7:+105575579 | MsaT040958.1:CDS |
AGCAGGGACGAAGAGGAGGA+AGG | 0.609762 | 7:+105574216 | MsaT040958.1:CDS |
ATCGAAATGGTAAGATGTGG+CGG | 0.613418 | 7:+105575022 | MsaT040958.1:CDS |
CCAGCTGTGGTGGTTGATGG+TGG | 0.616460 | 7:-105575576 | None:intergenic |
CTCTTCTACAACAACTTCTG+GGG | 0.618726 | 7:+105575845 | MsaT040958.1:CDS |
AGGAAGGTGAGAGTATTGAG+GGG | 0.620927 | 7:-105575352 | None:intergenic |
AAGAGCAAGGGCAATGACGA+AGG | 0.626355 | 7:+105574775 | MsaT040958.1:CDS |
CATCACTATTCATCATATGG+TGG | 0.627152 | 7:+105575303 | MsaT040958.1:CDS |
GAAGTTGTTGTAGAAGAGGG+TGG | 0.628343 | 7:-105575840 | None:intergenic |
CAGCGTAATTAGGATTAGGA+AGG | 0.629941 | 7:-105575368 | None:intergenic |
TCAACCACCACAGCTGGTGG+TGG | 0.631467 | 7:+105575582 | MsaT040958.1:CDS |
TTCTTCAGCACCACCACAGG+CGG | 0.633356 | 7:+105575797 | MsaT040958.1:CDS |
AAAACGACTGAGACTATTTG+GGG | 0.634135 | 7:+105575743 | MsaT040958.1:CDS |
GATGAATAGTGATGATTGGG+AGG | 0.640962 | 7:-105575294 | None:intergenic |
GAGGAGGTGAGATAATAGAG+GGG | 0.642836 | 7:-105575543 | None:intergenic |
GGTTGGGAAGTTGAATGAAG+AGG | 0.643292 | 7:+105574711 | MsaT040958.1:CDS |
TGATGGTGGCGTAATTGGCG+AGG | 0.643835 | 7:-105575562 | None:intergenic |
GCGGTGACACCTAGTGACGT+AGG | 0.646130 | 7:+105574901 | MsaT040958.1:CDS |
AAGATCGAAATGGTAAGATG+TGG | 0.654473 | 7:+105575019 | MsaT040958.1:CDS |
GATATCATCGCAATCACTGG+AGG | 0.662602 | 7:+105574246 | MsaT040958.1:CDS |
GTACATAGATTGGAGGCCAA+GGG | 0.664207 | 7:+105575185 | MsaT040958.1:CDS |
GGAGGCAATGTTAATACTAG+CGG | 0.665755 | 7:+105575720 | MsaT040958.1:CDS |
GTTATGTGATGACAAAAGGG+TGG | 0.673333 | 7:+105575076 | MsaT040958.1:CDS |
TTGTTGATGCCCTTGCACCA+CGG | 0.680815 | 7:-105575628 | None:intergenic |
TCGTTGGTAGAAGAATCCAA+AGG | 0.680986 | 7:-105574973 | None:intergenic |
CATGATCAACATCACATAGG+GGG | 0.690937 | 7:+105575870 | MsaT040958.1:CDS |
GTTGCACATCATCACCGCGG+AGG | 0.703943 | 7:+105575702 | MsaT040958.1:CDS |
GATCAGCAGCAGGAGCAGGG+TGG | 0.705208 | 7:-105575482 | None:intergenic |
TCATGATCAACATCACATAG+GGG | 0.705858 | 7:+105575869 | MsaT040958.1:CDS |
TGGTGGCGTAATTGGCGAGG+AGG | 0.722964 | 7:-105575559 | None:intergenic |
GCAATTCAGCACGTCCACGG+TGG | 0.740263 | 7:-105575149 | None:intergenic |
CCAGTTGCACATCATCACCG+CGG | 0.781500 | 7:+105575699 | MsaT040958.1:CDS |
GACATTGTATCATTCCACCG+TGG | 0.786574 | 7:+105575135 | MsaT040958.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 105574186 | 105575950 | 105574186 | ID=MsaG040958 |
Chr7 | mRNA | 105574186 | 105575950 | 105574186 | ID=MsaT040958.1;Parent=MsaG040958 |
Chr7 | exon | 105574186 | 105574291 | 105574186 | ID=MsaT040958.1.exon1;Parent=MsaT040958.1 |
Chr7 | CDS | 105574186 | 105574291 | 105574186 | ID=cds.MsaT040958.1;Parent=MsaT040958.1 |
Chr7 | exon | 105574659 | 105575950 | 105574659 | ID=MsaT040958.1.exon2;Parent=MsaT040958.1 |
Chr7 | CDS | 105574659 | 105575950 | 105574659 | ID=cds.MsaT040958.1;Parent=MsaT040958.1 |
Gene Sequence |
Protein sequence |