Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG041007 | XP_003626693.1 | 93.731 | 335 | 11 | 5 | 1 | 333 | 1 | 327 | 0.0 | 627 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG041007 | sp|Q8GXL3|SPL8_ARATH | 45.087 | 346 | 127 | 11 | 1 | 317 | 1 | 312 | 7.26e-79 | 247 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG041007 | tr|G7LBJ7|G7LBJ7_MEDTR | 93.731 | 335 | 11 | 5 | 1 | 333 | 1 | 327 | 0.0 | 627 |
Gene ID | Type | Classification |
---|---|---|
MsaG041007 | TF | SBP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG041007 | MtrunA17_Chr8g0334671 | 93.731 | 335 | 11 | 5 | 1 | 333 | 1 | 327 | 0.0 | 627 |
MsaG041007 | MtrunA17_Chr8g0360361 | 70.000 | 90 | 26 | 1 | 191 | 280 | 63 | 151 | 1.22e-35 | 127 |
MsaG041007 | MtrunA17_Chr4g0046991 | 72.619 | 84 | 22 | 1 | 185 | 267 | 64 | 147 | 2.34e-35 | 125 |
MsaG041007 | MtrunA17_Chr1g0194121 | 48.649 | 148 | 63 | 3 | 120 | 267 | 87 | 221 | 3.56e-35 | 135 |
MsaG041007 | MtrunA17_Chr2g0302791 | 52.419 | 124 | 53 | 2 | 153 | 276 | 104 | 221 | 7.18e-35 | 135 |
MsaG041007 | MtrunA17_Chr7g0231911 | 67.857 | 84 | 27 | 0 | 186 | 269 | 142 | 225 | 1.22e-34 | 129 |
MsaG041007 | MtrunA17_Chr3g0122411 | 54.472 | 123 | 49 | 2 | 153 | 268 | 118 | 240 | 7.74e-34 | 129 |
MsaG041007 | MtrunA17_Chr2g0282521 | 67.470 | 83 | 27 | 0 | 185 | 267 | 56 | 138 | 2.35e-33 | 120 |
MsaG041007 | MtrunA17_Chr4g0061651 | 70.370 | 81 | 24 | 0 | 188 | 268 | 118 | 198 | 2.53e-33 | 128 |
MsaG041007 | MtrunA17_Chr2g0308321 | 72.368 | 76 | 21 | 0 | 193 | 268 | 171 | 246 | 3.21e-33 | 129 |
MsaG041007 | MtrunA17_Chr7g0270541 | 49.624 | 133 | 59 | 2 | 135 | 267 | 95 | 219 | 3.25e-33 | 130 |
MsaG041007 | MtrunA17_Chr5g0420051 | 61.458 | 96 | 33 | 1 | 173 | 268 | 165 | 256 | 3.58e-33 | 127 |
MsaG041007 | MtrunA17_Chr7g0258471 | 67.857 | 84 | 27 | 0 | 183 | 266 | 132 | 215 | 3.74e-33 | 126 |
MsaG041007 | MtrunA17_Chr1g0162871 | 55.000 | 120 | 43 | 1 | 149 | 268 | 71 | 179 | 7.33e-33 | 129 |
MsaG041007 | MtrunA17_Chr8g0386271 | 55.752 | 113 | 46 | 1 | 156 | 268 | 66 | 174 | 7.43e-32 | 122 |
MsaG041007 | MtrunA17_Chr3g0132091 | 68.421 | 76 | 24 | 0 | 193 | 268 | 73 | 148 | 2.38e-30 | 118 |
MsaG041007 | MtrunA17_Chr7g0224821 | 62.651 | 83 | 31 | 0 | 188 | 270 | 72 | 154 | 8.75e-30 | 117 |
MsaG041007 | MtrunA17_Chr8g0377401 | 50.442 | 113 | 51 | 2 | 153 | 265 | 127 | 234 | 9.42e-28 | 108 |
MsaG041007 | MtrunA17_Chr8g0377421 | 45.902 | 122 | 53 | 2 | 157 | 266 | 85 | 205 | 9.31e-26 | 104 |
MsaG041007 | MtrunA17_Chr2g0286661 | 58.108 | 74 | 31 | 0 | 193 | 266 | 103 | 176 | 6.49e-24 | 102 |
MsaG041007 | MtrunA17_Chr2g0317041 | 66.102 | 59 | 20 | 0 | 181 | 239 | 87 | 145 | 2.28e-21 | 89.0 |
MsaG041007 | MtrunA17_Chr1g0175031 | 43.434 | 99 | 43 | 1 | 154 | 239 | 22 | 120 | 6.82e-19 | 81.6 |
MsaG041007 | MtrunA17_Chr8g0377431 | 57.143 | 56 | 24 | 0 | 191 | 246 | 149 | 204 | 1.34e-15 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG041007 | AT1G02065.1 | 45.087 | 346 | 127 | 11 | 1 | 317 | 1 | 312 | 7.38e-80 | 247 |
MsaG041007 | AT1G02065.2 | 43.494 | 269 | 89 | 7 | 1 | 240 | 1 | 235 | 1.86e-58 | 189 |
MsaG041007 | AT1G69170.1 | 53.543 | 127 | 52 | 3 | 140 | 266 | 78 | 197 | 1.74e-34 | 130 |
MsaG041007 | AT1G20980.1 | 57.627 | 118 | 49 | 1 | 153 | 270 | 81 | 197 | 3.54e-34 | 133 |
MsaG041007 | AT1G27370.6 | 47.368 | 152 | 59 | 3 | 133 | 268 | 105 | 251 | 3.83e-34 | 128 |
MsaG041007 | AT1G27370.1 | 47.368 | 152 | 59 | 3 | 133 | 268 | 105 | 251 | 7.35e-34 | 129 |
MsaG041007 | AT1G27370.5 | 47.368 | 152 | 59 | 3 | 133 | 268 | 105 | 251 | 7.35e-34 | 129 |
MsaG041007 | AT1G27370.3 | 47.368 | 152 | 59 | 3 | 133 | 268 | 105 | 251 | 7.35e-34 | 129 |
MsaG041007 | AT1G27370.2 | 47.368 | 152 | 59 | 3 | 133 | 268 | 105 | 251 | 7.35e-34 | 129 |
MsaG041007 | AT1G27370.4 | 47.368 | 152 | 59 | 3 | 133 | 268 | 105 | 251 | 7.35e-34 | 129 |
MsaG041007 | AT1G27370.7 | 47.368 | 152 | 59 | 3 | 133 | 268 | 105 | 251 | 7.35e-34 | 129 |
MsaG041007 | AT2G47070.1 | 73.333 | 75 | 20 | 0 | 193 | 267 | 106 | 180 | 2.86e-33 | 130 |
MsaG041007 | AT1G76580.2 | 71.250 | 80 | 23 | 0 | 189 | 268 | 110 | 189 | 3.20e-33 | 130 |
MsaG041007 | AT1G76580.3 | 71.250 | 80 | 23 | 0 | 189 | 268 | 110 | 189 | 3.47e-33 | 130 |
MsaG041007 | AT3G60030.1 | 54.545 | 121 | 44 | 3 | 152 | 272 | 96 | 205 | 3.47e-33 | 130 |
MsaG041007 | AT1G76580.1 | 71.250 | 80 | 23 | 0 | 189 | 268 | 110 | 189 | 5.30e-33 | 130 |
MsaG041007 | AT2G33810.1 | 67.073 | 82 | 27 | 0 | 186 | 267 | 47 | 128 | 5.32e-33 | 119 |
MsaG041007 | AT5G43270.3 | 53.125 | 128 | 43 | 3 | 153 | 266 | 118 | 242 | 1.31e-32 | 125 |
MsaG041007 | AT5G43270.1 | 53.125 | 128 | 43 | 3 | 153 | 266 | 118 | 242 | 1.31e-32 | 125 |
MsaG041007 | AT5G43270.2 | 53.125 | 128 | 43 | 3 | 153 | 266 | 118 | 242 | 1.31e-32 | 125 |
MsaG041007 | AT1G53160.3 | 60.606 | 99 | 35 | 2 | 178 | 272 | 35 | 133 | 2.91e-32 | 119 |
MsaG041007 | AT1G53160.2 | 62.766 | 94 | 31 | 2 | 183 | 272 | 40 | 133 | 4.39e-32 | 118 |
MsaG041007 | AT1G53160.1 | 62.766 | 94 | 31 | 2 | 183 | 272 | 40 | 133 | 4.39e-32 | 118 |
MsaG041007 | AT3G57920.1 | 56.140 | 114 | 44 | 2 | 155 | 268 | 27 | 134 | 6.85e-32 | 122 |
MsaG041007 | AT1G27360.2 | 50.781 | 128 | 53 | 2 | 151 | 268 | 123 | 250 | 3.19e-31 | 121 |
MsaG041007 | AT1G27360.1 | 50.781 | 128 | 53 | 2 | 151 | 268 | 123 | 250 | 3.19e-31 | 121 |
MsaG041007 | AT1G27360.3 | 50.781 | 128 | 53 | 2 | 151 | 268 | 123 | 250 | 3.19e-31 | 121 |
MsaG041007 | AT1G27360.4 | 50.781 | 128 | 53 | 2 | 151 | 268 | 123 | 250 | 3.19e-31 | 121 |
MsaG041007 | AT5G50570.1 | 60.714 | 84 | 33 | 0 | 185 | 268 | 93 | 176 | 5.10e-30 | 117 |
MsaG041007 | AT5G50570.2 | 60.714 | 84 | 33 | 0 | 185 | 268 | 93 | 176 | 5.10e-30 | 117 |
MsaG041007 | AT5G50670.1 | 60.714 | 84 | 33 | 0 | 185 | 268 | 93 | 176 | 5.10e-30 | 117 |
MsaG041007 | AT5G50670.2 | 60.714 | 84 | 33 | 0 | 185 | 268 | 93 | 176 | 5.10e-30 | 117 |
MsaG041007 | AT2G42200.1 | 66.667 | 78 | 26 | 0 | 191 | 268 | 72 | 149 | 1.15e-29 | 117 |
MsaG041007 | AT3G15270.1 | 62.667 | 75 | 28 | 0 | 193 | 267 | 63 | 137 | 6.36e-29 | 110 |
MsaG041007 | AT5G18830.2 | 46.316 | 95 | 51 | 0 | 172 | 266 | 117 | 211 | 2.45e-22 | 98.6 |
MsaG041007 | AT5G18830.1 | 46.316 | 95 | 51 | 0 | 172 | 266 | 117 | 211 | 2.78e-22 | 98.2 |
MsaG041007 | AT5G18830.3 | 46.316 | 95 | 51 | 0 | 172 | 266 | 117 | 211 | 3.14e-22 | 98.2 |
MsaG041007 | AT2G47070.2 | 72.549 | 51 | 14 | 0 | 217 | 267 | 1 | 51 | 8.66e-19 | 87.8 |
Find 131 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGTTAACATCCTCGGATTT+TGG | 0.206559 | 8:+531821 | None:intergenic |
TTGTGAATATCTTGAGTATT+TGG | 0.246735 | 8:+530726 | None:intergenic |
CTTGAAGTTGTTGAAGGGCT+TGG | 0.266098 | 8:+530421 | None:intergenic |
GGAGTTGTTGTCTTCATTTC+CGG | 0.269715 | 8:+532186 | None:intergenic |
CTCTCCCTTGACCCTCTTCC+TGG | 0.270502 | 8:-531881 | MsaT041007.1:CDS |
CTTCTATCTGAGTTTGATAA+TGG | 0.278524 | 8:-530810 | MsaT041007.1:CDS |
GCTGGGCCTGTGGGCTAAAC+TGG | 0.287964 | 8:+532005 | None:intergenic |
ATCACAACCTGCTGCATTGC+TGG | 0.295297 | 8:+531528 | None:intergenic |
TCTAGAGCCCACGAAGTCTA+TGG | 0.307240 | 8:+531796 | None:intergenic |
GCAGCCACCGTCGTTGCAGC+TGG | 0.327647 | 8:-531569 | MsaT041007.1:CDS |
TTGAAGTTGTTGAAGGGCTT+GGG | 0.330690 | 8:+530422 | None:intergenic |
TTCAAACTCGCCTCGGTGTC+AGG | 0.349519 | 8:-531669 | MsaT041007.1:CDS |
GGCTAAACTGGTTGTGGTGG+TGG | 0.358538 | 8:+532017 | None:intergenic |
CCGGTAAGCATGATGTTTGA+TGG | 0.359920 | 8:+532205 | None:intergenic |
TGTGAATATCTTGAGTATTT+GGG | 0.361532 | 8:+530727 | None:intergenic |
CCATCAAACATCATGCTTAC+CGG | 0.366132 | 8:-532205 | MsaT041007.1:CDS |
TTGTTGAAGGGCTTGGGCTT+TGG | 0.370317 | 8:+530428 | None:intergenic |
GAAGGATCCCCGCCAGAGTC+TGG | 0.374246 | 8:-530517 | MsaT041007.1:intron |
TCGGTCTAGACCACCTGAAC+CGG | 0.380874 | 8:-531705 | MsaT041007.1:CDS |
GGAGGTTGTGGTTGAGGTGG+AGG | 0.381025 | 8:+531911 | None:intergenic |
GAACCTGTCGAACCCGGTTC+AGG | 0.386586 | 8:+531692 | None:intergenic |
ATGGAAGGAGGTTGTGGTTG+AGG | 0.388721 | 8:+531905 | None:intergenic |
TTATCCGACAACTACCTTAA+CGG | 0.399307 | 8:-532097 | MsaT041007.1:CDS |
TACCTTAACGGACCTGGTGC+TGG | 0.415148 | 8:-532085 | MsaT041007.1:CDS |
TGCAACGACGGTGGCTGCCT+TGG | 0.421484 | 8:+531574 | None:intergenic |
TAAACTGGTTGTGGTGGTGG+TGG | 0.427802 | 8:+532020 | None:intergenic |
CGAAGAAGGACTGATGGATA+TGG | 0.430604 | 8:+531978 | None:intergenic |
GAGAGCATGGAAGGAGGTTG+TGG | 0.432257 | 8:+531899 | None:intergenic |
TCACAAATCTCACAATACTT+TGG | 0.434049 | 8:-530709 | MsaT041007.1:CDS |
TTCGACCCACGGGCTTTCCA+TGG | 0.438059 | 8:-531959 | MsaT041007.1:CDS |
ACTGATGGATATGGTGCTGC+TGG | 0.447816 | 8:+531987 | None:intergenic |
ATTGAGCTTGAAGTTGTTGA+AGG | 0.454327 | 8:+530415 | None:intergenic |
TATGGTGCTGCTGGGCCTGT+GGG | 0.461581 | 8:+531996 | None:intergenic |
GTCCAGCACCAGGTCCGTTA+AGG | 0.461905 | 8:+532083 | None:intergenic |
CTTGACCCTCTTCCTGGTCA+TGG | 0.462725 | 8:-531875 | MsaT041007.1:CDS |
GAGACATGTTGGACTATGAA+TGG | 0.466941 | 8:-532234 | None:intergenic |
ATCAGAGGCTGCTGCTGCGG+CGG | 0.476446 | 8:+532165 | None:intergenic |
ATATGGTGCTGCTGGGCCTG+TGG | 0.478517 | 8:+531995 | None:intergenic |
TTTGGTACAAGGAGGAATCC+AGG | 0.480794 | 8:+531839 | None:intergenic |
CATGGACATGGACATGGCCC+TGG | 0.481738 | 8:-531857 | MsaT041007.1:CDS |
GACTTCGTGGGCTCTAGACT+TGG | 0.484947 | 8:-531791 | MsaT041007.1:CDS |
CCACCTGAACCGGGTTCGAC+AGG | 0.485330 | 8:-531695 | MsaT041007.1:CDS |
TTGCAATGCTGATCTATCTC+AGG | 0.487614 | 8:-531639 | MsaT041007.1:CDS |
AGACATGTTGGACTATGAAT+GGG | 0.488109 | 8:-532233 | None:intergenic |
TATCAAACTCAGATAGAAGA+TGG | 0.491198 | 8:+530814 | None:intergenic |
GGTTCTGCCAGCAATGCAGC+AGG | 0.491828 | 8:-531535 | MsaT041007.1:intron |
GACAGTGGCTGTTTCTCCAC+CGG | 0.491984 | 8:-530473 | MsaT041007.1:CDS |
GGGTCAAGGGAGAGCATGGA+AGG | 0.493307 | 8:+531890 | None:intergenic |
ATTGAGTTCCAGACTCTGGC+GGG | 0.495092 | 8:+530509 | None:intergenic |
TAGATCAGCATTGCAACCTT+CGG | 0.495851 | 8:+531646 | None:intergenic |
CCTCTTCCTGGTCATGGACA+TGG | 0.496987 | 8:-531869 | MsaT041007.1:CDS |
CGGTAAGCATGATGTTTGAT+GGG | 0.498241 | 8:+532206 | None:intergenic |
GCGGCTCACGAAGTCGTCTT+CGG | 0.499397 | 8:+531736 | None:intergenic |
ATCAGTCCTTCTTCGACCCA+CGG | 0.500041 | 8:-531970 | MsaT041007.1:CDS |
CCTGGTCATGGACATGGACA+TGG | 0.500096 | 8:-531863 | MsaT041007.1:CDS |
CACAAACTTTGTGGCGGCGG+TGG | 0.502474 | 8:+531606 | None:intergenic |
AAGAGGGTCAAGGGAGAGCA+TGG | 0.508675 | 8:+531886 | None:intergenic |
GAAAGCCCGTGGGTCGAAGA+AGG | 0.515436 | 8:+531964 | None:intergenic |
ACCCACGGGCTTTCCATGGA+GGG | 0.516573 | 8:-531955 | MsaT041007.1:CDS |
GAAGGAGGTTGTGGTTGAGG+TGG | 0.517345 | 8:+531908 | None:intergenic |
TCAGTCCTTCTTCGACCCAC+GGG | 0.517839 | 8:-531969 | MsaT041007.1:CDS |
GTGGTCTAGACCGACGGTAA+AGG | 0.522892 | 8:+531714 | None:intergenic |
TTGATCAGAGGCTGCTGCTG+CGG | 0.526928 | 8:+532162 | None:intergenic |
CCTGTGGGCTAAACTGGTTG+TGG | 0.528281 | 8:+532011 | None:intergenic |
AGTGAAACTCACAAACTTTG+TGG | 0.531020 | 8:+531597 | None:intergenic |
TTTGAAGAACCTGTCGAACC+CGG | 0.531837 | 8:+531686 | None:intergenic |
TCTAGACTTGGACTCAACCT+TGG | 0.532282 | 8:-531779 | MsaT041007.1:CDS |
ACGTAGCTGCAGGAAGAGAT+TGG | 0.533276 | 8:-530784 | MsaT041007.1:CDS |
TCGATGGTGGGTCCAGCACC+AGG | 0.535316 | 8:+532073 | None:intergenic |
AAGCAGTTGATGACCCTCCA+TGG | 0.538221 | 8:+531942 | None:intergenic |
AGGTCCGTTAAGGTAGTTGT+CGG | 0.538800 | 8:+532093 | None:intergenic |
ATCACCACTGTTTATGTCGA+TGG | 0.538976 | 8:+532057 | None:intergenic |
GACCTTTGTCGAAAATAATC+CGG | 0.539450 | 8:+530454 | None:intergenic |
CTAGAGCCCACGAAGTCTAT+GGG | 0.543180 | 8:+531797 | None:intergenic |
GTGGGCTAAACTGGTTGTGG+TGG | 0.546991 | 8:+532014 | None:intergenic |
TATGGGTCTGTTAACATCCT+CGG | 0.547316 | 8:+531814 | None:intergenic |
CCATGTCCATGTCCATGACC+AGG | 0.547483 | 8:+531863 | None:intergenic |
AGTCAACCCAGCTGCAACGA+CGG | 0.547853 | 8:+531562 | None:intergenic |
CAGCCACCGTCGTTGCAGCT+GGG | 0.549496 | 8:-531568 | MsaT041007.1:CDS |
CCATGTCCATGACCAGGAAG+AGG | 0.550701 | 8:+531869 | None:intergenic |
ATAATGGAAAACGTAGCTGC+AGG | 0.553645 | 8:-530794 | MsaT041007.1:CDS |
CTGATGGATATGGTGCTGCT+GGG | 0.553703 | 8:+531988 | None:intergenic |
CAGGTTCTTCAAACTCGCCT+CGG | 0.554504 | 8:-531676 | MsaT041007.1:CDS |
TTGAGCTTGAAGTTGTTGAA+GGG | 0.561199 | 8:+530416 | None:intergenic |
GACCCACGGGCTTTCCATGG+AGG | 0.561666 | 8:-531956 | MsaT041007.1:CDS |
TAACAGACCCATAGACTTCG+TGG | 0.562712 | 8:-531804 | MsaT041007.1:CDS |
ACTCACAAACTTTGTGGCGG+CGG | 0.568304 | 8:+531603 | None:intergenic |
GTGGTCGAAAATTTGACGGT+GGG | 0.570524 | 8:+532138 | None:intergenic |
CGTAGTGGTCGAAAATTTGA+CGG | 0.570580 | 8:+532134 | None:intergenic |
CATGACCAGGAAGAGGGTCA+AGG | 0.572330 | 8:+531876 | None:intergenic |
GACAACTACCTTAACGGACC+TGG | 0.572506 | 8:-532091 | MsaT041007.1:CDS |
TCGTGAGCCGCCTTTACCGT+CGG | 0.573246 | 8:-531724 | MsaT041007.1:CDS |
ATCTACATCGTCGGTGACAG+TGG | 0.575565 | 8:-530488 | MsaT041007.1:CDS |
GACCCTCCATGGAAAGCCCG+TGG | 0.579305 | 8:+531953 | None:intergenic |
GTAGATTGAGTTCCAGACTC+TGG | 0.579544 | 8:+530505 | None:intergenic |
GAGGTTGTGGTTGAGGTGGA+GGG | 0.580574 | 8:+531912 | None:intergenic |
ATGACCAGGAAGAGGGTCAA+GGG | 0.581128 | 8:+531877 | None:intergenic |
CCACAACCAGTTTAGCCCAC+AGG | 0.583382 | 8:-532011 | MsaT041007.1:CDS |
ACCACTGTTTATGTCGATGG+TGG | 0.584036 | 8:+532060 | None:intergenic |
GTGGGTCGAAGAAGGACTGA+TGG | 0.584810 | 8:+531972 | None:intergenic |
TTGACGGTGGGCTTGATCAG+AGG | 0.585239 | 8:+532150 | None:intergenic |
CCTGTCGAACCCGGTTCAGG+TGG | 0.588152 | 8:+531695 | None:intergenic |
TGGCTGATCATAATCGTCGC+AGG | 0.588393 | 8:-530764 | MsaT041007.1:CDS |
CGGTCTAGACCACCTGAACC+GGG | 0.589283 | 8:-531704 | MsaT041007.1:CDS |
TCGCCTCGGTGTCAGGCCGA+AGG | 0.589450 | 8:-531662 | MsaT041007.1:CDS |
AGAAGTATGTGCGGCCACCA+AGG | 0.589908 | 8:+531762 | None:intergenic |
CCACTGTTTATGTCGATGGT+GGG | 0.597970 | 8:+532061 | None:intergenic |
TTGGTACAAGGAGGAATCCA+GGG | 0.599525 | 8:+531840 | None:intergenic |
AGACTTGGACTCAACCTTGG+TGG | 0.599617 | 8:-531776 | MsaT041007.1:CDS |
TTGCAGCTGGGTTGACTCAG+CGG | 0.610713 | 8:-531556 | MsaT041007.1:CDS |
TCAAGGGAGAGCATGGAAGG+AGG | 0.612363 | 8:+531893 | None:intergenic |
GTCTAGACCGACGGTAAAGG+CGG | 0.615862 | 8:+531717 | None:intergenic |
AGTTTGTGAGTTTCACTCCA+AGG | 0.619014 | 8:-531591 | MsaT041007.1:CDS |
CATGTCCATGACCAGGAAGA+GGG | 0.620462 | 8:+531870 | None:intergenic |
GATTGAGTTCCAGACTCTGG+CGG | 0.626944 | 8:+530508 | None:intergenic |
TGGAACTCAATCTACATCGT+CGG | 0.632089 | 8:-530497 | MsaT041007.1:CDS |
ACCCTCCATGGAAAGCCCGT+GGG | 0.633313 | 8:+531954 | None:intergenic |
AACAGACCCATAGACTTCGT+GGG | 0.640045 | 8:-531803 | MsaT041007.1:CDS |
CAACCCAGCTGCAACGACGG+TGG | 0.640932 | 8:+531565 | None:intergenic |
GTTCAGGTGGTCTAGACCGA+CGG | 0.647783 | 8:+531708 | None:intergenic |
GCGTACGTAGGTTCACTACC+CGG | 0.662915 | 8:+530381 | None:intergenic |
CCTCCTTGTACCAAAATCCG+AGG | 0.665794 | 8:-531831 | MsaT041007.1:CDS |
AGTGGTCGAAAATTTGACGG+TGG | 0.671593 | 8:+532137 | None:intergenic |
ACATAGCTTGAGAAGCGTAG+TGG | 0.674169 | 8:+532119 | None:intergenic |
GACATGTTGGACTATGAATG+GGG | 0.677368 | 8:-532232 | MsaT041007.1:CDS |
GAAACTCACAAACTTTGTGG+CGG | 0.681714 | 8:+531600 | None:intergenic |
CTTTGTCGAAAATAATCCGG+TGG | 0.682961 | 8:+530457 | None:intergenic |
CAACCTTCGGCCTGACACCG+AGG | 0.715496 | 8:+531659 | None:intergenic |
TTGAGTTCCAGACTCTGGCG+GGG | 0.723001 | 8:+530510 | None:intergenic |
CTTCGGAAGAGAAGTATGTG+CGG | 0.729099 | 8:+531753 | None:intergenic |
CCCACCATCGACATAAACAG+TGG | 0.734841 | 8:-532061 | MsaT041007.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 530396 | 532251 | 530396 | ID=MsaG041007 |
Chr8 | mRNA | 530396 | 532251 | 530396 | ID=MsaT041007.1;Parent=MsaG041007 |
Chr8 | exon | 530396 | 530535 | 530396 | ID=MsaT041007.1.exon3;Parent=MsaT041007.1 |
Chr8 | CDS | 530396 | 530535 | 530396 | ID=cds.MsaT041007.1;Parent=MsaT041007.1 |
Chr8 | exon | 530694 | 530839 | 530694 | ID=MsaT041007.1.exon2;Parent=MsaT041007.1 |
Chr8 | CDS | 530694 | 530839 | 530694 | ID=cds.MsaT041007.1;Parent=MsaT041007.1 |
Chr8 | exon | 531536 | 532251 | 531536 | ID=MsaT041007.1.exon1;Parent=MsaT041007.1 |
Chr8 | CDS | 531536 | 532251 | 531536 | ID=cds.MsaT041007.1;Parent=MsaT041007.1 |
Gene Sequence |
Protein sequence |