AlfalfaGEDB | MsaG041007

M. sativa ssp. caerulea / MsaG041007

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009791 GO:0009908 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363 GO:1903046
PFAM: PF03110.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041007	XP_003626693.1	93.731	335	11	5	1	333	1	327	0.0	627

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041007	sp\|Q8GXL3\|SPL8_ARATH	45.087	346	127	11	1	317	1	312	7.26e-79	247

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041007	tr\|G7LBJ7\|G7LBJ7_MEDTR	93.731	335	11	5	1	333	1	327	0.0	627

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TFs/TRs:

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Gene ID	Type	Classification
MsaG041007	TF	SBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041007	MtrunA17_Chr8g0334671	93.731	335	11	5	1	333	1	327	0.0	627
MsaG041007	MtrunA17_Chr8g0360361	70.000	90	26	1	191	280	63	151	1.22e-35	127
MsaG041007	MtrunA17_Chr4g0046991	72.619	84	22	1	185	267	64	147	2.34e-35	125
MsaG041007	MtrunA17_Chr1g0194121	48.649	148	63	3	120	267	87	221	3.56e-35	135
MsaG041007	MtrunA17_Chr2g0302791	52.419	124	53	2	153	276	104	221	7.18e-35	135
MsaG041007	MtrunA17_Chr7g0231911	67.857	84	27	0	186	269	142	225	1.22e-34	129
MsaG041007	MtrunA17_Chr3g0122411	54.472	123	49	2	153	268	118	240	7.74e-34	129
MsaG041007	MtrunA17_Chr2g0282521	67.470	83	27	0	185	267	56	138	2.35e-33	120
MsaG041007	MtrunA17_Chr4g0061651	70.370	81	24	0	188	268	118	198	2.53e-33	128
MsaG041007	MtrunA17_Chr2g0308321	72.368	76	21	0	193	268	171	246	3.21e-33	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041007	AT1G02065.1	45.087	346	127	11	1	317	1	312	7.38e-80	247
MsaG041007	AT1G02065.2	43.494	269	89	7	1	240	1	235	1.86e-58	189
MsaG041007	AT1G69170.1	53.543	127	52	3	140	266	78	197	1.74e-34	130
MsaG041007	AT1G20980.1	57.627	118	49	1	153	270	81	197	3.54e-34	133
MsaG041007	AT1G27370.6	47.368	152	59	3	133	268	105	251	3.83e-34	128
MsaG041007	AT1G27370.1	47.368	152	59	3	133	268	105	251	7.35e-34	129
MsaG041007	AT1G27370.5	47.368	152	59	3	133	268	105	251	7.35e-34	129
MsaG041007	AT1G27370.3	47.368	152	59	3	133	268	105	251	7.35e-34	129
MsaG041007	AT1G27370.2	47.368	152	59	3	133	268	105	251	7.35e-34	129
MsaG041007	AT1G27370.4	47.368	152	59	3	133	268	105	251	7.35e-34	129

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Find 131 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGACCCATAGACTTCGT+GGG	0.640045	8:-531803	MsaT041007.1:CDS
AAGAGGGTCAAGGGAGAGCA+TGG	0.508675	8:+531886	None:intergenic
AAGCAGTTGATGACCCTCCA+TGG	0.538221	8:+531942	None:intergenic
ACATAGCTTGAGAAGCGTAG+TGG	0.674169	8:+532119	None:intergenic
ACCACTGTTTATGTCGATGG+TGG	0.584036	8:+532060	None:intergenic
ACCCACGGGCTTTCCATGGA+GGG	0.516573	8:-531955	MsaT041007.1:CDS
ACCCTCCATGGAAAGCCCGT+GGG	0.633313	8:+531954	None:intergenic
ACGTAGCTGCAGGAAGAGAT+TGG	0.533276	8:-530784	MsaT041007.1:CDS
ACTCACAAACTTTGTGGCGG+CGG	0.568304	8:+531603	None:intergenic
ACTGATGGATATGGTGCTGC+TGG	0.447816	8:+531987	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	530396	532251	530396	ID=MsaG041007
Chr8	mRNA	530396	532251	530396	ID=MsaT041007.1;Parent=MsaG041007
Chr8	exon	530396	530535	530396	ID=MsaT041007.1.exon3;Parent=MsaT041007.1
Chr8	CDS	530396	530535	530396	ID=cds.MsaT041007.1;Parent=MsaT041007.1
Chr8	exon	530694	530839	530694	ID=MsaT041007.1.exon2;Parent=MsaT041007.1
Chr8	CDS	530694	530839	530694	ID=cds.MsaT041007.1;Parent=MsaT041007.1
Chr8	exon	531536	532251	531536	ID=MsaT041007.1.exon1;Parent=MsaT041007.1
Chr8	CDS	531536	532251	531536	ID=cds.MsaT041007.1;Parent=MsaT041007.1

Gene Sequence

>MsaT041007.1

ATGTTGGACTATGAATGGGGTAACCCATCAAACATCATGCTTACCGGAAATGAAGACAACAACTCCGCCGCAGCAGCAGCCTCTGATCAAGCCCACCGTCAAATTTTCGACCACTACGCTTCTCAAGCTATGTTATCCGACAACTACCTTAACGGACCTGGTGCTGGACCCACCATCGACATAAACAGTGGTGATTTTACTCATCATAACCACCACCACCACAACCAGTTTAGCCCACAGGCCCAGCAGCACCATATCCATCAGTCCTTCTTCGACCCACGGGCTTTCCATGGAGGGTCATCAACTGCTTCTTCTTACCCTCCACCTCAACCACAACCTCCTTCCATGCTCTCCCTTGACCCTCTTCCTGGTCATGGACATGGACATGGCCCTGGATTCCTCCTTGTACCAAAATCCGAGGATGTTAACAGACCCATAGACTTCGTGGGCTCTAGACTTGGACTCAACCTTGGTGGCCGCACATACTTCTCTTCCGAAGACGACTTCGTGAGCCGCCTTTACCGTCGGTCTAGACCACCTGAACCGGGTTCGACAGGTTCTTCAAACTCGCCTCGGTGTCAGGCCGAAGGTTGCAATGCTGATCTATCTCAGGCGAAGCACTACCACCGCCGCCACAAAGTTTGTGAGTTTCACTCCAAGGCAGCCACCGTCGTTGCAGCTGGGTTGACTCAGCGGTTCTGCCAGCAATGCAGCAGGTTCCATCTTCTATCTGAGTTTGATAATGGAAAACGTAGCTGCAGGAAGAGATTGGCTGATCATAATCGTCGCAGGAGAAAAACTCAGCACCCAAATACTCAAGATATTCACAAATCTCACAATACTTTGGATAATTCTTCCACAAGATCCCCGCCAGAGTCTGGAACTCAATCTACATCGTCGGTGACAGTGGCTGTTTCTCCACCGGATTATTTTCGACAAAGGTCGTACCAAAGCCCAAGCCCTTCAACAACTTCAAGCTCAATGTTTTTCTCCACCGGGTAG

Protein sequence

>MsaT041007.1

MLDYEWGNPSNIMLTGNEDNNSAAAAASDQAHRQIFDHYASQAMLSDNYLNGPGAGPTIDINSGDFTHHNHHHHNQFSPQAQQHHIHQSFFDPRAFHGGSSTASSYPPPQPQPPSMLSLDPLPGHGHGHGPGFLLVPKSEDVNRPIDFVGSRLGLNLGGRTYFSSEDDFVSRLYRRSRPPEPGSTGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVVAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQHPNTQDIHKSHNTLDNSSTRSPPESGTQSTSSVTVAVSPPDYFRQRSYQSPSPSTTSSSMFFSTG*