AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG041023

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041023 MtrunA17_Chr8g0334881 79.310 319 18 2 1 271 1 319 6.78e-160 447
MsaG041023 MtrunA17_Chr4g0013361 42.333 300 129 11 1 262 1 294 5.16e-57 184
MsaG041023 MtrunA17_Chr1g0154031 45.283 106 43 1 10 100 76 181 2.76e-27 108
MsaG041023 MtrunA17_Chr3g0099131 41.121 107 48 1 9 100 40 146 1.02e-25 105
MsaG041023 MtrunA17_Chr7g0217221 36.496 137 67 3 6 124 8 142 4.58e-25 100
MsaG041023 MtrunA17_Chr1g0209661 35.294 119 62 1 5 108 22 140 5.90e-25 101
MsaG041023 MtrunA17_Chr8g0354661 40.566 106 48 1 10 100 37 142 6.87e-25 103
MsaG041023 MtrunA17_Chr5g0410961 41.593 113 49 2 6 103 8 118 8.35e-25 101
MsaG041023 MtrunA17_Chr1g0180391 42.982 114 45 3 1 98 14 123 1.01e-24 98.6
MsaG041023 MtrunA17_Chr4g0058631 37.267 161 74 5 2 140 4 159 1.74e-24 100
MsaG041023 MtrunA17_Chr1g0193801 28.328 293 157 9 2 257 4 280 1.81e-24 100
MsaG041023 MtrunA17_Chr7g0270891 42.105 114 51 1 2 100 4 117 5.28e-24 99.4
MsaG041023 MtrunA17_Chr3g0080861 36.792 106 52 1 10 100 37 142 8.44e-24 100
MsaG041023 MtrunA17_Chr6g0453211 39.167 120 58 1 6 110 8 127 8.66e-24 98.2
MsaG041023 MtrunA17_Chr4g0039971 40.187 107 49 1 6 97 9 115 2.06e-23 97.8
MsaG041023 MtrunA17_Chr7g0228231 38.053 113 55 1 10 107 14 126 2.36e-23 94.7
MsaG041023 MtrunA17_Chr5g0395281 39.815 108 50 1 5 97 7 114 2.98e-23 96.3
MsaG041023 MtrunA17_Chr1g0194301 36.207 116 59 1 4 104 27 142 3.55e-23 95.5
MsaG041023 MtrunA17_Chr1g0167661 32.973 185 97 6 6 166 8 189 3.58e-23 95.1
MsaG041023 MtrunA17_Chr7g0274581 38.655 119 58 1 10 113 12 130 3.69e-23 94.0
MsaG041023 MtrunA17_Chr6g0450101 39.815 108 49 2 10 101 14 121 3.98e-23 94.0
MsaG041023 MtrunA17_Chr2g0281071 40.741 108 48 2 10 101 13 120 4.10e-23 96.7
MsaG041023 MtrunA17_Chr4g0060721 39.474 114 52 2 10 108 13 124 4.48e-23 96.3
MsaG041023 MtrunA17_Chr1g0194291 35.043 117 61 1 3 104 14 130 5.33e-23 95.1
MsaG041023 MtrunA17_Chr2g0327821 40.164 122 58 1 7 113 3 124 6.84e-23 94.0
MsaG041023 MtrunA17_Chr2g0323411 38.739 111 52 2 6 100 8 118 1.03e-22 95.1
MsaG041023 MtrunA17_Chr5g0397231 41.121 107 48 1 2 93 4 110 3.41e-22 94.0
MsaG041023 MtrunA17_Chr2g0330041 38.462 130 62 3 2 113 4 133 3.43e-22 94.7
MsaG041023 MtrunA17_Chr1g0211161 39.640 111 52 1 2 97 5 115 3.55e-22 92.0
MsaG041023 MtrunA17_Chr8g0387421 39.474 114 54 1 2 100 4 117 3.68e-22 93.6
MsaG041023 MtrunA17_Chr7g0261281 35.200 125 64 2 10 119 12 134 3.74e-22 92.8
MsaG041023 MtrunA17_Chr4g0053431 37.013 154 81 2 12 150 5 157 4.21e-22 92.8
MsaG041023 MtrunA17_Chr2g0323351 34.000 150 82 2 6 140 8 155 4.44e-22 92.0
MsaG041023 MtrunA17_Chr8g0342541 35.766 137 71 2 2 121 4 140 5.44e-22 93.6
MsaG041023 MtrunA17_Chr2g0309911 38.739 111 53 1 2 97 3 113 6.13e-22 92.8
MsaG041023 MtrunA17_Chr3g0092401 38.393 112 53 2 10 105 13 124 6.21e-22 92.8
MsaG041023 MtrunA17_Chr7g0254411 39.167 120 54 3 10 110 12 131 6.74e-22 93.2
MsaG041023 MtrunA17_Chr2g0311221 40.777 103 46 1 6 93 10 112 8.39e-22 92.8
MsaG041023 MtrunA17_Chr1g0193371 39.474 114 54 1 2 100 4 117 8.75e-22 93.2
MsaG041023 MtrunA17_Chr3g0117091 40.179 112 50 2 7 103 9 118 9.17e-22 93.2
MsaG041023 MtrunA17_Chr4g0048511 38.889 108 50 2 10 101 13 120 1.16e-21 92.8
MsaG041023 MtrunA17_Chr4g0042671 30.288 208 102 6 10 175 12 218 1.61e-21 92.8
MsaG041023 MtrunA17_Chr1g0168661 37.719 114 56 1 2 100 13 126 2.37e-21 90.5
MsaG041023 MtrunA17_Chr6g0453471 34.559 136 72 2 6 126 8 141 3.06e-21 91.7
MsaG041023 MtrunA17_Chr3g0115821 37.383 107 52 1 6 97 8 114 3.12e-21 91.7
MsaG041023 MtrunA17_Chr5g0401731 44.037 109 44 3 4 97 8 114 3.91e-21 90.9
MsaG041023 MtrunA17_Chr1g0167691 33.846 130 70 2 6 119 8 137 4.55e-21 89.4
MsaG041023 MtrunA17_Chr8g0342521 36.154 130 66 2 2 114 4 133 5.05e-21 90.9
MsaG041023 MtrunA17_Chr8g0349261 43.269 104 43 2 10 97 13 116 6.38e-21 89.7
MsaG041023 MtrunA17_Chr7g0217741 37.037 108 52 2 10 101 12 119 1.04e-20 89.4
MsaG041023 MtrunA17_Chr1g0203441 40.179 112 51 2 11 106 14 125 1.61e-20 88.2
MsaG041023 MtrunA17_Chr1g0186061 37.383 107 52 1 6 97 16 122 1.67e-20 88.2
MsaG041023 MtrunA17_Chr8g0342481 39.286 112 52 2 2 97 4 115 2.20e-20 89.7
MsaG041023 MtrunA17_Chr2g0328771 38.261 115 54 2 10 109 20 132 2.25e-20 88.6
MsaG041023 MtrunA17_Chr4g0008551 42.574 101 42 2 12 97 38 137 2.50e-20 89.0
MsaG041023 MtrunA17_Chr1g0187761 36.441 118 58 2 10 112 12 127 2.59e-20 87.4
MsaG041023 MtrunA17_Chr8g0385321 38.318 107 51 1 6 97 8 114 2.83e-20 88.6
MsaG041023 MtrunA17_Chr4g0068921 36.134 119 61 1 1 104 15 133 4.62e-20 85.5
MsaG041023 MtrunA17_Chr1g0203411 37.736 106 51 1 10 100 12 117 5.21e-20 87.4
MsaG041023 MtrunA17_Chr3g0131121 38.318 107 51 1 6 97 8 114 5.25e-20 87.4
MsaG041023 MtrunA17_Chr5g0441131 40.385 104 46 2 10 97 9 112 6.03e-20 84.7
MsaG041023 MtrunA17_Chr5g0435101 37.383 107 52 1 6 97 7 113 8.98e-20 85.1
MsaG041023 MtrunA17_Chr5g0440781 37.963 108 51 2 10 101 12 119 1.19e-19 84.3
MsaG041023 MtrunA17_Chr1g0151941 37.963 108 51 2 6 97 8 115 1.25e-19 85.5
MsaG041023 MtrunA17_Chr7g0271241 39.623 106 49 1 2 92 4 109 1.39e-19 87.4
MsaG041023 MtrunA17_Chr6g0452271 36.607 112 55 2 6 101 8 119 1.41e-19 86.7
MsaG041023 MtrunA17_Chr4g0022881 31.884 138 78 2 6 128 8 144 1.44e-19 85.1
MsaG041023 MtrunA17_Chr5g0417821 37.963 108 51 2 10 101 7 114 1.48e-19 85.9
MsaG041023 MtrunA17_Chr5g0441141 37.963 108 51 2 10 101 12 119 2.23e-19 85.1
MsaG041023 MtrunA17_Chr5g0440761 37.963 108 51 2 10 101 12 119 2.24e-19 85.1
MsaG041023 MtrunA17_Chr3g0133601 41.748 103 44 2 12 99 37 138 2.60e-19 84.0
MsaG041023 MtrunA17_Chr4g0032401 37.500 128 62 4 3 112 9 136 3.06e-19 85.9
MsaG041023 MtrunA17_Chr4g0022931 39.048 105 48 2 10 98 13 117 3.43e-19 84.7
MsaG041023 MtrunA17_Chr3g0103281 36.449 107 53 1 6 97 8 114 4.05e-19 85.5
MsaG041023 MtrunA17_Chr4g0022901 33.835 133 72 2 10 126 13 145 4.12e-19 84.3
MsaG041023 MtrunA17_Chr1g0157731 41.584 101 43 2 12 97 91 190 6.05e-19 86.7
MsaG041023 MtrunA17_Chr1g0152011 30.348 201 111 6 6 188 8 197 7.60e-19 84.7
MsaG041023 MtrunA17_Chr2g0327351 35.461 141 71 3 6 130 8 144 9.37e-19 84.3
MsaG041023 MtrunA17_Chr6g0454921 42.056 107 45 3 1 92 5 109 9.83e-19 82.0
MsaG041023 MtrunA17_Chr4g0037141 36.607 112 54 2 6 100 8 119 1.14e-18 83.6
MsaG041023 MtrunA17_Chr4g0022911 36.885 122 61 2 10 115 13 134 1.28e-18 83.6
MsaG041023 MtrunA17_Chr2g0293911 35.294 119 62 1 1 104 15 133 1.37e-18 84.0
MsaG041023 MtrunA17_Chr8g0346561 36.207 116 58 2 10 109 12 127 1.47e-18 83.6
MsaG041023 MtrunA17_Chr2g0322521 41.509 106 47 1 10 100 29 134 2.14e-18 84.0
MsaG041023 MtrunA17_Chr4g0022891 32.000 150 87 1 6 140 8 157 2.18e-18 82.0
MsaG041023 MtrunA17_Chr4g0030881 40.870 115 44 4 7 97 4 118 2.26e-18 82.4
MsaG041023 MtrunA17_Chr3g0139671 40.594 101 44 2 12 97 85 184 2.56e-18 84.7
MsaG041023 MtrunA17_Chr4g0028311 37.037 108 52 2 6 97 8 115 2.77e-18 83.2
MsaG041023 MtrunA17_Chr7g0238631 33.790 219 107 7 12 198 113 325 2.82e-18 84.3
MsaG041023 MtrunA17_Chr1g0192411 35.514 107 54 1 10 101 12 118 3.65e-18 83.6
MsaG041023 MtrunA17_Chr3g0088461 38.835 103 48 1 10 97 22 124 4.87e-18 82.4
MsaG041023 MtrunA17_Chr3g0110351 36.449 107 53 1 6 97 8 114 5.31e-18 82.0
MsaG041023 MtrunA17_Chr6g0487491 32.484 157 76 5 6 132 8 164 5.41e-18 81.3
MsaG041023 MtrunA17_Chr4g0068061 26.840 231 118 7 10 219 12 212 5.44e-18 82.4
MsaG041023 MtrunA17_Chr5g0434571 36.449 107 53 1 6 97 44 150 5.81e-18 82.4
MsaG041023 MtrunA17_Chr4g0057031 37.383 107 52 1 6 97 8 114 7.09e-18 81.3
MsaG041023 MtrunA17_Chr6g0470971 39.216 102 47 1 11 97 15 116 7.52e-18 81.3
MsaG041023 MtrunA17_Chr7g0228531 39.806 103 47 2 9 97 217 318 1.78e-17 81.6
MsaG041023 MtrunA17_Chr3g0135311 31.677 161 92 3 6 150 8 166 1.83e-17 80.9
MsaG041023 MtrunA17_Chr3g0121241 34.343 99 50 1 10 93 42 140 4.46e-17 79.3
MsaG041023 MtrunA17_Chr4g0058991 39.806 103 46 2 10 97 207 308 4.89e-17 80.5
MsaG041023 MtrunA17_Chr4g0070611 24.091 220 147 4 7 209 9 225 7.32e-17 79.0
MsaG041023 MtrunA17_Chr4g0055981 33.333 102 53 1 7 93 52 153 7.63e-17 77.4
MsaG041023 MtrunA17_Chr4g0044421 36.634 101 49 1 12 97 14 114 7.95e-17 76.6
MsaG041023 MtrunA17_Chr5g0400821 36.111 108 53 2 6 97 8 115 1.04e-16 78.6
MsaG041023 MtrunA17_Chr4g0070641 29.012 162 90 5 7 145 9 168 1.36e-16 75.5
MsaG041023 MtrunA17_Chr7g0264641 36.111 108 53 2 6 97 8 115 2.73e-16 76.6
MsaG041023 MtrunA17_Chr5g0429661 36.697 109 53 2 4 97 114 221 2.78e-16 77.8
MsaG041023 MtrunA17_Chr7g0228891 33.929 112 59 1 6 102 8 119 3.33e-16 76.6
MsaG041023 MtrunA17_Chr1g0194951 33.981 103 53 1 10 97 12 114 4.17e-16 77.4
MsaG041023 MtrunA17_Chr7g0275911 32.323 99 52 1 10 93 12 110 5.24e-16 75.5
MsaG041023 MtrunA17_Chr7g0228481 35.593 118 60 3 9 112 217 332 5.63e-16 77.0
MsaG041023 MtrunA17_Chr3g0099141 35.955 89 42 1 6 79 36 124 5.66e-16 73.2
MsaG041023 MtrunA17_Chr3g0117511 38.614 101 46 2 12 97 183 282 6.00e-16 77.0
MsaG041023 MtrunA17_Chr8g0343831 34.343 99 50 1 10 93 8 106 6.23e-16 75.5
MsaG041023 MtrunA17_Chr4g0072751 36.538 104 50 2 6 93 8 111 8.64e-16 76.3
MsaG041023 MtrunA17_Chr6g0480581 38.462 104 48 2 12 100 4 106 8.76e-16 74.7
MsaG041023 MtrunA17_Chr7g0269831 33.083 133 69 4 10 127 12 139 9.92e-16 76.3
MsaG041023 MtrunA17_Chr5g0434931 35.455 110 54 2 10 102 35 144 1.27e-15 75.1
MsaG041023 MtrunA17_Chr5g0437321 42.268 97 40 2 12 93 19 114 1.29e-15 75.1
MsaG041023 MtrunA17_Chr4g0054391 34.951 103 51 2 6 92 8 110 1.75e-15 74.7
MsaG041023 MtrunA17_Chr5g0434911 35.185 108 53 2 10 100 21 128 3.39e-15 73.6
MsaG041023 MtrunA17_Chr8g0360111 36.082 97 47 1 10 91 25 121 1.26e-14 72.0
MsaG041023 MtrunA17_Chr7g0247131 40.385 104 38 3 42 122 11 113 1.37e-14 72.0
MsaG041023 MtrunA17_Chr5g0434831 33.010 103 54 1 10 97 7 109 2.41e-14 69.7
MsaG041023 MtrunA17_Chr7g0228991 35.354 99 49 1 10 93 29 127 4.12e-14 70.5
MsaG041023 MtrunA17_Chr7g0220341 32.432 148 70 5 10 136 25 163 4.55e-14 70.5
MsaG041023 MtrunA17_Chr7g0238651 39.362 94 40 2 15 91 10 103 5.06e-14 71.2
MsaG041023 MtrunA17_Chr5g0434841 35.185 108 53 2 10 100 20 127 5.62e-14 70.9
MsaG041023 MtrunA17_Chr5g0417621 38.462 104 48 2 12 100 134 236 1.28e-13 70.5
MsaG041023 MtrunA17_Chr4g0042501 34.711 121 60 3 12 117 105 221 1.87e-13 69.7
MsaG041023 MtrunA17_Chr5g0397841 38.542 96 43 2 12 92 110 204 5.25e-13 68.6
MsaG041023 MtrunA17_Chr3g0125801 38.462 104 48 2 3 91 7 109 1.74e-12 66.2
MsaG041023 MtrunA17_Chr7g0240821 32.632 95 49 1 14 93 5 99 1.36e-11 62.8
MsaG041023 MtrunA17_Chr7g0233061 34.234 111 55 3 12 107 180 287 2.15e-11 63.5
MsaG041023 MtrunA17_Chr6g0460661 28.571 140 72 3 12 136 16 142 3.60e-11 60.5
MsaG041023 MtrunA17_Chr7g0228401 36.264 91 42 2 23 98 290 379 5.81e-11 62.4
MsaG041023 MtrunA17_Chr7g0254261 36.538 104 50 2 12 100 89 191 7.49e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041023 AT3G60460.1 45.016 311 114 12 1 268 4 300 1.07e-65 207
MsaG041023 AT4G26930.1 44.340 106 44 1 10 100 19 124 2.27e-27 109
MsaG041023 AT5G55020.1 41.509 106 47 1 10 100 26 131 2.45e-25 105
MsaG041023 AT3G27810.1 31.818 154 89 2 10 148 20 172 3.77e-25 100
MsaG041023 AT2G32460.2 41.509 106 47 1 10 100 6 111 6.47e-25 103
MsaG041023 AT2G32460.1 41.509 106 47 1 10 100 18 123 6.67e-25 103
MsaG041023 AT5G06100.1 37.273 110 54 1 6 100 28 137 6.34e-24 100
MsaG041023 AT3G11440.2 38.679 106 50 1 10 100 41 146 8.49e-24 100
MsaG041023 AT3G01140.2 37.405 131 65 2 6 121 8 136 1.01e-23 98.6
MsaG041023 AT3G01140.1 37.405 131 65 2 6 121 51 179 1.19e-23 99.0
MsaG041023 AT3G47600.1 34.437 151 79 4 6 139 8 155 1.20e-23 98.2
MsaG041023 AT2G26960.1 43.810 105 44 1 12 101 22 126 1.32e-23 99.4
MsaG041023 AT5G06100.5 37.273 110 54 1 6 100 28 137 1.35e-23 100
MsaG041023 AT5G06100.2 37.273 110 54 1 6 100 28 137 1.35e-23 100
MsaG041023 AT5G06100.3 37.273 110 54 1 6 100 28 137 1.35e-23 100
MsaG041023 AT5G06100.4 37.273 110 54 1 6 100 28 137 1.35e-23 100
MsaG041023 AT3G11440.3 38.679 106 50 1 10 100 41 146 1.89e-23 99.8
MsaG041023 AT3G11440.4 38.679 106 50 1 10 100 41 146 1.89e-23 99.8
MsaG041023 AT3G11440.1 38.679 106 50 1 10 100 41 146 1.89e-23 99.8
MsaG041023 AT5G40350.1 37.288 118 57 2 10 112 17 132 3.73e-23 94.7
MsaG041023 AT1G74650.1 36.585 123 63 1 10 117 12 134 5.41e-23 96.7
MsaG041023 AT3G61250.1 41.964 112 48 2 6 102 8 117 5.43e-23 95.9
MsaG041023 AT1G08810.1 36.054 147 77 2 6 137 8 152 6.17e-23 95.5
MsaG041023 AT2G47190.1 39.091 110 52 1 10 104 20 129 6.84e-23 95.1
MsaG041023 AT3G12720.1 41.803 122 54 2 10 114 22 143 7.01e-23 95.9
MsaG041023 AT1G48000.1 37.273 110 54 1 10 104 32 141 1.10e-22 94.0
MsaG041023 AT4G01680.3 41.818 110 49 1 7 101 9 118 1.12e-22 94.0
MsaG041023 AT3G01530.1 38.136 118 55 2 4 106 19 133 1.26e-22 92.8
MsaG041023 AT4G28110.1 38.739 111 52 2 6 100 8 118 1.70e-22 94.4
MsaG041023 AT3G02940.2 37.500 112 54 2 6 101 8 119 1.89e-22 94.7
MsaG041023 AT3G13890.2 39.640 111 52 1 2 97 4 114 1.93e-22 95.5
MsaG041023 AT4G01680.1 41.818 110 49 1 7 101 9 118 2.01e-22 95.1
MsaG041023 AT1G68320.1 36.207 116 59 1 8 108 17 132 2.08e-22 94.0
MsaG041023 AT3G48920.1 42.857 112 49 1 5 101 13 124 2.23e-22 93.6
MsaG041023 AT3G02940.1 37.500 112 54 2 6 101 8 119 2.37e-22 94.7
MsaG041023 AT3G02940.3 37.500 112 54 2 6 101 8 119 2.37e-22 94.7
MsaG041023 AT5G62470.2 36.434 129 59 2 10 115 12 140 5.94e-22 94.0
MsaG041023 AT4G21440.1 38.889 108 50 2 10 101 12 119 6.62e-22 94.0
MsaG041023 AT1G25340.1 34.426 122 65 1 2 108 10 131 8.01e-22 92.4
MsaG041023 AT5G65230.1 39.252 107 50 1 6 97 8 114 8.11e-22 92.8
MsaG041023 AT3G50060.1 47.525 101 37 2 12 97 6 105 9.37e-22 92.8
MsaG041023 AT5G59780.3 39.831 118 56 1 7 109 5 122 1.12e-21 91.3
MsaG041023 AT5G26660.1 40.367 109 50 1 7 100 9 117 1.49e-21 92.8
MsaG041023 AT3G28910.1 38.318 107 51 1 6 97 8 114 1.83e-21 92.0
MsaG041023 AT1G63910.1 39.474 114 54 1 2 100 4 117 1.87e-21 92.8
MsaG041023 AT5G54230.1 37.963 108 51 2 10 101 12 119 1.90e-21 92.0
MsaG041023 AT1G79180.1 41.441 111 49 2 6 100 10 120 2.23e-21 91.7
MsaG041023 AT1G09540.1 40.541 111 51 1 2 97 4 114 2.45e-21 92.4
MsaG041023 AT2G16720.1 38.168 131 62 4 6 120 8 135 2.50e-21 90.9
MsaG041023 AT5G16770.4 37.500 112 54 2 6 101 8 119 2.72e-21 91.7
MsaG041023 AT5G16770.3 37.500 112 54 2 6 101 8 119 2.72e-21 91.7
MsaG041023 AT5G16770.1 37.500 112 54 2 6 101 8 119 2.82e-21 92.0
MsaG041023 AT5G16770.2 37.500 112 54 2 6 101 8 119 2.82e-21 92.0
MsaG041023 AT5G15310.1 35.115 131 68 2 6 121 8 136 2.96e-21 91.7
MsaG041023 AT5G15310.4 28.856 201 111 5 6 186 8 196 3.07e-21 90.1
MsaG041023 AT5G15310.2 35.115 131 68 2 6 121 8 136 3.10e-21 91.3
MsaG041023 AT1G22640.1 38.318 107 51 1 6 97 8 114 7.21e-21 89.4
MsaG041023 AT4G34990.1 35.385 130 67 2 6 120 8 135 7.21e-21 89.7
MsaG041023 AT3G46130.1 40.367 109 50 1 7 100 6 114 8.21e-21 89.4
MsaG041023 AT2G31180.1 36.522 115 57 2 10 108 12 126 9.52e-21 89.0
MsaG041023 AT3G30210.1 39.806 103 47 1 10 97 27 129 9.70e-21 89.4
MsaG041023 AT1G57560.2 37.607 117 56 2 2 103 4 118 1.32e-20 89.0
MsaG041023 AT1G57560.1 37.607 117 56 2 2 103 4 118 1.34e-20 89.7
MsaG041023 AT1G35515.1 36.025 161 77 7 6 142 8 166 2.41e-20 87.0
MsaG041023 AT3G55730.1 41.600 125 52 4 12 116 56 179 2.52e-20 90.1
MsaG041023 AT5G62470.1 36.434 129 58 3 10 115 12 139 3.39e-20 89.0
MsaG041023 AT4G05100.1 37.615 109 51 2 10 103 13 119 3.46e-20 88.6
MsaG041023 AT4G13480.1 35.115 131 64 2 7 122 3 127 3.83e-20 87.4
MsaG041023 AT3G13890.1 36.667 120 52 2 2 97 4 123 3.99e-20 89.0
MsaG041023 AT5G67300.1 46.535 101 38 2 12 97 6 105 4.50e-20 88.2
MsaG041023 AT1G16490.1 40.000 110 50 2 6 99 10 119 5.33e-20 87.4
MsaG041023 AT2G23290.1 44.248 113 46 3 1 97 1 112 6.81e-20 87.8
MsaG041023 AT3G24310.1 35.156 128 62 2 7 119 15 136 1.00e-19 86.7
MsaG041023 AT3G53200.1 38.889 108 51 1 5 97 4 111 1.01e-19 85.9
MsaG041023 AT5G10280.1 36.449 107 53 1 6 97 8 114 1.06e-19 87.4
MsaG041023 AT4G37780.1 39.815 108 49 2 6 97 8 115 1.10e-19 87.0
MsaG041023 AT4G09460.1 36.000 150 72 6 6 134 8 154 1.48e-19 85.5
MsaG041023 AT1G34670.1 36.449 107 53 1 6 97 8 114 1.56e-19 87.4
MsaG041023 AT4G01680.2 38.525 122 48 3 7 101 9 130 2.25e-19 86.7
MsaG041023 AT5G07700.1 34.884 172 84 6 8 158 10 174 2.31e-19 86.7
MsaG041023 AT5G07700.2 34.884 172 84 6 8 158 10 174 2.31e-19 86.7
MsaG041023 AT3G12820.1 39.823 113 51 2 6 103 10 120 2.57e-19 84.7
MsaG041023 AT5G02320.1 43.243 111 46 3 12 106 127 236 3.10e-19 87.4
MsaG041023 AT5G02320.2 43.243 111 46 3 12 106 127 236 3.10e-19 87.4
MsaG041023 AT4G38620.1 37.383 107 52 1 6 97 8 114 3.22e-19 85.5
MsaG041023 AT1G25340.2 33.607 122 61 2 2 108 10 126 3.46e-19 85.1
MsaG041023 AT4G37260.1 42.202 109 46 3 4 97 6 112 3.66e-19 85.9
MsaG041023 AT2G39880.1 42.574 101 42 2 12 97 50 149 4.14e-19 86.3
MsaG041023 AT5G02320.3 43.243 111 46 3 12 106 67 176 4.67e-19 86.7
MsaG041023 AT5G07690.1 37.736 106 51 1 8 98 10 115 5.10e-19 85.5
MsaG041023 AT1G56160.1 37.273 110 53 2 6 99 10 119 5.43e-19 85.1
MsaG041023 AT1G25340.3 33.607 122 61 2 2 108 10 126 5.89e-19 85.1
MsaG041023 AT5G61420.2 37.838 111 52 2 8 103 10 118 7.54e-19 85.5
MsaG041023 AT3G23250.1 33.333 156 85 3 10 149 12 164 1.06e-18 84.0
MsaG041023 AT5G14750.1 36.792 106 52 1 3 93 9 114 1.13e-18 82.4
MsaG041023 AT5G56110.1 36.449 107 53 1 6 97 8 114 1.24e-18 84.3
MsaG041023 AT4G25560.1 37.190 121 59 2 1 106 1 119 1.52e-18 83.6
MsaG041023 AT1G18570.1 37.719 114 54 2 5 103 8 119 1.67e-18 84.3
MsaG041023 AT5G23000.1 37.037 108 52 2 6 97 8 115 1.90e-18 84.0
MsaG041023 AT4G18770.1 41.584 101 43 2 12 97 217 316 1.96e-18 84.7
MsaG041023 AT3G28470.1 38.835 103 48 1 6 93 8 110 1.99e-18 83.6
MsaG041023 AT3G27920.1 35.484 124 63 3 4 111 9 131 2.20e-18 82.0
MsaG041023 AT5G40330.1 37.864 103 48 2 7 93 8 110 2.28e-18 81.6
MsaG041023 AT5G49620.1 39.091 110 52 1 10 104 26 135 2.37e-18 83.2
MsaG041023 AT1G74430.1 38.739 111 52 2 6 100 8 118 2.51e-18 82.8
MsaG041023 AT4G22680.1 38.053 113 53 2 6 103 8 118 2.77e-18 82.4
MsaG041023 AT5G57620.1 37.963 108 51 2 6 97 8 115 3.30e-18 83.2
MsaG041023 AT3G13540.1 35.514 107 53 2 10 100 23 129 3.45e-18 82.0
MsaG041023 AT3G06490.1 37.391 115 57 1 5 104 14 128 4.05e-18 82.8
MsaG041023 AT5G11510.3 38.614 101 46 2 12 97 81 180 4.99e-18 84.3
MsaG041023 AT5G11510.1 38.614 101 46 2 12 97 81 180 4.99e-18 84.3
MsaG041023 AT5G11510.4 38.614 101 46 2 12 97 81 180 4.99e-18 84.3
MsaG041023 AT4G32730.5 35.065 154 70 4 12 144 87 231 5.04e-18 84.3
MsaG041023 AT4G32730.4 35.065 154 70 4 12 144 87 231 5.04e-18 84.3
MsaG041023 AT4G32730.3 35.065 154 70 4 12 144 87 231 5.04e-18 84.3
MsaG041023 AT4G32730.2 35.065 154 70 4 12 144 87 231 5.04e-18 84.3
MsaG041023 AT5G11510.2 38.614 101 46 2 12 97 81 180 5.11e-18 84.0
MsaG041023 AT5G11510.5 38.614 101 46 2 12 97 81 180 5.61e-18 84.0
MsaG041023 AT1G66230.1 36.364 110 55 1 6 100 8 117 5.68e-18 82.0
MsaG041023 AT4G17785.2 36.893 103 50 1 10 97 13 115 6.05e-18 82.8
MsaG041023 AT4G17785.1 36.893 103 50 1 10 97 13 115 6.06e-18 82.8
MsaG041023 AT4G32730.1 35.065 154 70 4 12 144 87 231 6.47e-18 84.0
MsaG041023 AT5G49330.1 35.922 103 51 1 10 97 12 114 1.14e-17 82.0
MsaG041023 AT2G47460.1 34.951 103 52 1 10 97 12 114 1.17e-17 82.0
MsaG041023 AT1G06180.1 34.951 103 52 1 10 97 12 114 2.58e-17 79.3
MsaG041023 AT3G09370.1 42.574 101 42 2 12 97 130 229 2.80e-17 81.6
MsaG041023 AT3G09370.2 42.574 101 42 2 12 97 135 234 2.85e-17 81.6
MsaG041023 AT2G26950.1 38.235 102 48 1 12 98 18 119 3.14e-17 80.9
MsaG041023 AT5G12870.1 36.036 111 55 2 10 104 18 128 3.27e-17 79.7
MsaG041023 AT5G62320.1 36.885 122 52 3 1 97 1 122 3.47e-17 79.0
MsaG041023 AT3G09370.3 42.574 101 42 2 12 97 143 242 3.76e-17 81.3
MsaG041023 AT4G12350.1 36.283 113 55 2 6 103 8 118 4.10e-17 79.7
MsaG041023 AT1G18710.1 37.838 111 53 2 6 100 8 118 4.44e-17 79.3
MsaG041023 AT3G09230.1 39.640 111 48 3 2 97 48 154 4.94e-17 80.5
MsaG041023 AT3G08500.1 35.455 110 56 1 3 97 23 132 5.45e-17 80.1
MsaG041023 AT3G49690.1 37.037 108 52 2 6 97 8 115 6.89e-17 79.3
MsaG041023 AT5G58850.1 35.780 109 54 2 4 97 97 204 9.50e-17 79.7
MsaG041023 AT5G60890.1 34.906 106 54 1 7 97 9 114 9.98e-17 78.6
MsaG041023 AT5G52600.1 33.333 102 53 1 7 93 9 110 1.08e-16 77.0
MsaG041023 AT1G79180.2 33.103 145 46 4 6 100 10 153 1.11e-16 79.0
MsaG041023 AT5G65790.1 36.111 108 53 2 6 97 8 115 1.41e-16 79.0
MsaG041023 AT5G14340.1 29.747 158 90 3 6 146 20 173 2.38e-16 77.4
MsaG041023 AT2G36890.1 34.188 117 59 3 6 106 8 122 3.08e-16 77.4
MsaG041023 AT3G62610.1 34.951 103 52 1 10 97 12 114 3.17e-16 77.8
MsaG041023 AT5G16600.1 36.364 110 55 1 6 100 8 117 3.29e-16 77.4
MsaG041023 AT5G52260.1 36.752 117 57 2 3 104 5 119 3.44e-16 76.6
MsaG041023 AT5G40360.1 38.393 112 51 3 2 98 150 258 3.75e-16 77.8
MsaG041023 AT2G36890.2 35.185 108 54 2 6 97 49 156 4.07e-16 77.4
MsaG041023 AT5G35550.1 32.174 115 61 2 7 106 11 123 6.22e-16 75.9
MsaG041023 AT1G69560.2 28.444 225 131 6 3 204 114 331 8.61e-16 76.6
MsaG041023 AT1G69560.1 28.444 225 131 6 3 204 98 315 8.74e-16 76.3
MsaG041023 AT4G00540.2 44.444 108 40 4 10 98 101 207 1.56e-15 76.3
MsaG041023 AT4G00540.1 44.444 108 40 4 10 98 99 205 2.64e-15 75.5
MsaG041023 AT1G74080.1 33.962 106 55 1 8 98 10 115 2.70e-15 75.1
MsaG041023 AT1G66370.1 26.829 246 139 9 10 238 8 229 3.19e-15 73.6
MsaG041023 AT5G49620.2 34.677 124 52 2 10 104 26 149 4.66e-15 74.3
MsaG041023 AT3G27785.1 36.893 103 49 2 10 97 187 288 6.51e-15 74.3
MsaG041023 AT5G11050.1 34.286 105 53 2 8 97 101 204 1.41e-14 73.6
MsaG041023 AT3G27810.2 33.607 122 61 4 44 148 5 123 1.63e-14 70.5
MsaG041023 AT3G29020.1 34.821 112 54 3 12 108 65 172 6.62e-14 69.7
MsaG041023 AT3G29020.2 34.821 112 54 3 12 108 67 174 6.97e-14 70.9
MsaG041023 AT1G26780.2 38.462 104 48 2 12 100 98 200 1.41e-13 70.1
MsaG041023 AT1G26780.1 38.462 104 48 2 12 100 98 200 1.66e-13 69.3
MsaG041023 AT1G17950.1 36.538 104 50 2 12 100 5 107 1.80e-13 68.9
MsaG041023 AT5G17800.1 37.500 104 49 2 12 100 93 195 1.96e-13 69.7
MsaG041023 AT3G47600.2 34.746 118 67 5 24 139 40 149 7.37e-13 67.8
MsaG041023 AT3G46130.3 42.254 71 26 1 44 99 11 81 1.37e-12 65.9
MsaG041023 AT2G37630.1 38.298 94 41 2 15 91 7 100 1.46e-12 67.4
MsaG041023 AT5G40350.2 39.286 84 34 2 44 112 6 87 1.77e-12 64.7
MsaG041023 AT4G33450.1 33.621 116 61 2 10 110 17 131 1.78e-12 65.9
MsaG041023 AT3G46130.4 42.254 71 26 1 44 99 21 91 2.73e-12 65.5
MsaG041023 AT5G59780.2 40.741 81 33 1 44 109 21 101 2.90e-12 64.7
MsaG041023 AT1G66380.1 35.354 99 49 1 10 93 8 106 3.31e-12 63.2
MsaG041023 AT1G56650.1 35.354 99 49 1 10 93 8 106 3.54e-12 65.1
MsaG041023 AT5G26660.2 41.667 72 27 1 44 100 15 86 5.03e-12 65.5
MsaG041023 AT5G59780.1 47.368 57 30 0 53 109 1 57 9.26e-12 62.4
MsaG041023 AT1G73410.1 37.500 104 49 2 12 100 6 108 9.84e-12 63.9
MsaG041023 AT1G73410.2 37.500 104 49 2 12 100 6 108 1.20e-11 62.8
MsaG041023 AT3G46130.2 50.000 48 24 0 53 100 1 48 1.49e-11 62.4
MsaG041023 AT3G12820.2 47.826 69 29 3 35 103 11 72 3.90e-11 61.2
MsaG041023 AT1G66390.1 34.343 99 50 2 10 93 8 106 4.43e-11 62.0

Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTGTTCTTCCTGGTAAAT+AGG 0.261776 8:+766114 None:intergenic
GTAAAATCAGTTTCGAGTTC+TGG 0.265895 8:+765501 None:intergenic
ACAATGATGTCAAGAATTTC+TGG 0.266147 8:-766093 MsaT041023.1:CDS
ATAGAATTGCAGGAACAATT+TGG 0.279339 8:-766160 MsaT041023.1:CDS
GATGAGGAACTGAACTTATA+AGG 0.293723 8:+765723 None:intergenic
ACATCATTGTCTGTTCTTCC+TGG 0.301376 8:+766106 None:intergenic
TTCCGATCAAGTTATCAAAA+TGG 0.309350 8:-765646 MsaT041023.1:CDS
GAGGATTGTGATAGAATTGC+AGG 0.342837 8:-766170 MsaT041023.1:CDS
TCAATGCATGGTAATGAATA+TGG 0.359559 8:+765672 None:intergenic
CCCTTGGAAACATCTGAGTT+TGG 0.377212 8:-765429 MsaT041023.1:CDS
CAAAATTTATTTGATGTGTT+TGG 0.378842 8:-765453 MsaT041023.1:CDS
CTTCATAATTCAGAGCTTAG+AGG 0.387043 8:+765305 None:intergenic
AGGAACAATTTGGAAACAAA+TGG 0.388989 8:-766150 MsaT041023.1:CDS
AGTTCTTTGAAGAAGACCTT+TGG 0.401175 8:+766996 None:intergenic
ATTTGATGTGTTTGGTCCCT+TGG 0.403712 8:-765445 MsaT041023.1:CDS
CGAATGGAGCTCCAATCTCT+TGG 0.416244 8:+767021 None:intergenic
CTTTGATAGCTCTGATCAAA+AGG 0.418845 8:+765552 None:intergenic
AAAGGTCTTCTTCAAAGAAC+TGG 0.425042 8:-766994 MsaT041023.1:CDS
ACGTAATTCGCATCGAAACT+AGG 0.435618 8:+765591 None:intergenic
CTTCATCATGTGAAGAAGTA+TGG 0.445060 8:-767045 MsaT041023.1:CDS
AGAAGTATGGTCCAAGAGAT+TGG 0.451426 8:-767032 MsaT041023.1:CDS
TATCAAAATGGTTCCACTGT+TGG 0.461276 8:-765634 MsaT041023.1:CDS
ATGTGATCAAACATGTCCTC+TGG 0.462287 8:+765345 None:intergenic
TGTTCATCAACTCTTTCCAT+TGG 0.465631 8:+765474 None:intergenic
AAGAAGACCTTTGGATCGAA+TGG 0.469841 8:+767005 None:intergenic
TGGTAAATAGGATGCAATCT+TGG 0.487125 8:+766126 None:intergenic
CGCATCGAAACTAGGTTGCT+CGG 0.492075 8:+765599 None:intergenic
TGGAACACGGGAAGAAACTT+TGG 0.494230 8:+765994 None:intergenic
GGAACAATTTGGAAACAAAT+GGG 0.516278 8:-766149 MsaT041023.1:CDS
AGAAAGATCAAGAGCACGTA+AGG 0.526200 8:-767104 MsaT041023.1:CDS
GTAGACAAAAGAGGTTGGCT+AGG 0.535031 8:-766066 MsaT041023.1:CDS
CATGGTAATGAATATGGTTG+AGG 0.536436 8:+765678 None:intergenic
GGAAACATCTGAGTTTGGAA+TGG 0.540896 8:-765424 MsaT041023.1:CDS
TTTGATAGCTCTGATCAAAA+GGG 0.542008 8:+765553 None:intergenic
CTGAGGAAATGCAATGTGTT+CGG 0.543961 8:+765527 None:intergenic
TCTGGAGCAGTAGACAAAAG+AGG 0.552690 8:-766075 MsaT041023.1:CDS
AAGATTGCATCCTATTTACC+AGG 0.556707 8:-766124 MsaT041023.1:CDS
TTCATAATTCAGAGCTTAGA+GGG 0.556748 8:+765306 None:intergenic
TCCAAACTCAGATGTTTCCA+AGG 0.561882 8:+765428 None:intergenic
TAAGTTCAGTTCCTCATCAG+AGG 0.567214 8:-765718 MsaT041023.1:CDS
AGCACGTAAGGAAAGGTCCA+TGG 0.568999 8:-767092 MsaT041023.1:CDS
TGGAGCTCCATTCGATCCAA+AGG 0.580870 8:-767012 MsaT041023.1:CDS
AAGTTCAGTTCCTCATCAGA+GGG 0.590582 8:-765717 MsaT041023.1:CDS
TGATCGGAATTCTCAATGCA+TGG 0.593071 8:+765660 None:intergenic
GTTTCGAGTTCTGGAATCTG+AGG 0.593864 8:+765510 None:intergenic
AGTTTACAATCGAGGAAGAG+AGG 0.597675 8:-766189 MsaT041023.1:CDS
GATCAAGAGCACGTAAGGAA+AGG 0.598487 8:-767099 MsaT041023.1:CDS
GAGCAGTAGACAAAAGAGGT+TGG 0.607200 8:-766071 MsaT041023.1:CDS
TGATGCTTCTCCCTCTGATG+AGG 0.607465 8:+765707 None:intergenic
AGCTTAGAGGGATTTGAATG+TGG 0.609877 8:+765318 None:intergenic
TTCCCGTGTTCCATCTCACG+AGG 0.618226 8:-765984 MsaT041023.1:intron
CCAAACTCAGATGTTTCCAA+GGG 0.635161 8:+765429 None:intergenic
TTACCTCGTGAGATGGAACA+CGG 0.643501 8:+765981 None:intergenic
TTGATAGCTCTGATCAAAAG+GGG 0.650518 8:+765554 None:intergenic
TGGGTGCAAGTTTACAATCG+AGG 0.667952 8:-766197 MsaT041023.1:CDS
TACCTCGTGAGATGGAACAC+GGG 0.696461 8:+765982 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 765314 767136 765314 ID=MsaG041023
Chr8 mRNA 765314 767136 765314 ID=MsaT041023.1;Parent=MsaG041023
Chr8 exon 765314 765748 765314 ID=MsaT041023.1.exon3;Parent=MsaT041023.1
Chr8 CDS 765314 765748 765314 ID=cds.MsaT041023.1;Parent=MsaT041023.1
Chr8 exon 765985 766219 765985 ID=MsaT041023.1.exon2;Parent=MsaT041023.1
Chr8 CDS 765985 766219 765985 ID=cds.MsaT041023.1;Parent=MsaT041023.1
Chr8 exon 766991 767136 766991 ID=MsaT041023.1.exon1;Parent=MsaT041023.1
Chr8 CDS 766991 767136 766991 ID=cds.MsaT041023.1;Parent=MsaT041023.1
Gene Sequence

>MsaT041023.1

ATGCATGGGAAGAAAGATCAAGAGCACGTAAGGAAAGGTCCATGGAAAACAGAAGAAGATGAAGTGTTACTTCATCATGTGAAGAAGTATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGAACTGGCAATGGGTGCAAGTTTACAATCGAGGAAGAGAGGATTGTGATAGAATTGCAGGAACAATTTGGAAACAAATGGGCCAAGATTGCATCCTATTTACCAGGAAGAACAGACAATGATGTCAAGAATTTCTGGAGCAGTAGACAAAAGAGGTTGGCTAGGCTTCTCAAAACATCATCGTCAACAACCTCAAAGTCACACAAAAACAAAGCCAAAGTTTCTTCCCGTGTTCCATCTCACGAGGTTCCTTATAAGTTCAGTTCCTCATCAGAGGGAGAAGCATCATCAAAACCTCAACCATATTCATTACCATGCATTGAGAATTCCGATCAAGTTATCAAAATGGTTCCACTGTTGGATCTTAAAAAATCCGAGCAACCTAGTTTCGATGCGAATTACGTTGAACAAGAGTTCACCCCTTTTGATCAGAGCTATCAAAGCACCGAACACATTGCATTTCCTCAGATTCCAGAACTCGAAACTGATTTTACGTTTCCAATGGAAAGAGTTGATGAACAAAATTTATTTGATGTGTTTGGTCCCTTGGAAACATCTGAGTTTGGAATGGTTCCTTTTTTTGAGCCATCAGGGAGTTTCAAAATTGATAATTTCTTTGATGATTTTCCAGAGGACATGTTTGATCACATTGAGCCACATTCAAATCCCTCTAAGCTCTGA
Protein sequence

>MsaT041023.1

MHGKKDQEHVRKGPWKTEEDEVLLHHVKKYGPRDWSSIRSKGLLQRTGNGCKFTIEEERIVIELQEQFGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARLLKTSSSTTSKSHKNKAKVSSRVPSHEVPYKFSSSSEGEASSKPQPYSLPCIENSDQVIKMVPLLDLKKSEQPSFDANYVEQEFTPFDQSYQSTEHIAFPQIPELETDFTFPMERVDEQNLFDVFGPLETSEFGMVPFFEPSGSFKIDNFFDDFPEDMFDHIEPHSNPSKL*