AlfalfaGEDB | MsaG041331

M. sativa ssp. caerulea / MsaG041331

KEGG: K02206 K08829 K08830
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041331	XP_013444090.1	98.000	400	8	0	1	400	1	400	0.0	820

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041331	sp\|P43294\|MHK_ARATH	57.208	437	148	5	1	400	9	443	6.82e-176	500

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041331	tr\|A0A072TL06\|A0A072TL06_MEDTR	98.000	400	8	0	1	400	1	400	0.0	820

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041331	MtrunA17_Chr8g0339221	89.885	435	9	1	1	400	1	435	0.0	800
MsaG041331	MtrunA17_Chr5g0409421	59.184	294	119	1	1	294	1	293	6.06e-127	373
MsaG041331	MtrunA17_Chr8g0369451	56.122	294	128	1	1	294	1	293	6.56e-123	363
MsaG041331	MtrunA17_Chr4g0051261	38.206	301	169	7	1	291	1	294	1.02e-62	203
MsaG041331	MtrunA17_Chr2g0293491	37.542	301	171	7	1	291	1	294	1.55e-61	200
MsaG041331	MtrunA17_Chr6g0483151	38.158	304	174	6	2	300	12	306	2.83e-61	203
MsaG041331	MtrunA17_Chr8g0387401	38.246	285	168	4	7	284	55	338	6.52e-61	201
MsaG041331	MtrunA17_Chr7g0248461	37.979	287	166	8	7	284	41	324	8.83e-59	196
MsaG041331	MtrunA17_Chr1g0187371	36.913	298	168	8	2	284	16	308	4.33e-58	192
MsaG041331	MtrunA17_Chr8g0348481	38.328	287	165	7	7	284	40	323	8.43e-58	193

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041331	AT4G13020.1	57.437	437	147	5	1	400	1	435	2.18e-178	504
MsaG041331	AT4G13020.2	57.208	437	148	5	1	400	9	443	6.94e-177	500
MsaG041331	AT4G13020.3	55.936	438	153	5	1	400	9	444	1.02e-176	500
MsaG041331	AT4G13020.5	56.278	446	147	6	1	400	1	444	4.04e-175	496
MsaG041331	AT4G13020.4	59.446	397	123	4	1	361	1	395	9.50e-171	483
MsaG041331	AT4G13020.6	59.796	393	120	4	1	357	1	391	1.28e-169	480
MsaG041331	AT4G13020.7	67.419	310	99	2	1	310	1	308	3.36e-156	445
MsaG041331	AT4G13020.8	65.517	319	99	3	1	310	1	317	5.87e-153	437
MsaG041331	AT4G19110.1	57.483	294	124	1	1	294	1	293	1.39e-124	368
MsaG041331	AT4G19110.2	57.483	294	124	1	1	294	1	293	1.43e-124	368

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Find 80 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAAATCCTGCTGTCTG+TGG	0.602939	8:-5004439	None:intergenic
AAATATTATAAAGTTGAGAG+AGG	0.623176	8:+4979718	MsaT041331.1:CDS
AACAGCAGGAGTATAGCATG+GGG	0.742224	8:-4980866	None:intergenic
AACGGTGTCGTTAAGATGTT+AGG	0.459885	8:-5004475	None:intergenic
AATCACCTGATTGGTCTGAA+TGG	0.501182	8:-5003242	None:intergenic
AATGACCATTCAGACCAATC+AGG	0.442199	8:+5003237	MsaT041331.1:CDS
ACCTTTCACCAGGAAATATG+GGG	0.612243	8:-4981363	None:intergenic
ACTTCATTATCATTGTCATT+CGG	0.402672	8:+5003816	MsaT041331.1:CDS
AGGCAATGCCTGCGCTGGTA+CGG	0.486666	8:-5004514	None:intergenic
AGTGGATCACTGAGTGAACG+AGG	0.670089	8:-4982283	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	4978094	5004540	4978094	ID=MsaG041331
Chr8	mRNA	4978094	5004540	4978094	ID=MsaT041331.1;Parent=MsaG041331
Chr8	exon	4978094	4978101	4978094	ID=MsaT041331.1.exon1;Parent=MsaT041331.1
Chr8	CDS	4978094	4978101	4978094	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	4978196	4978274	4978196	ID=MsaT041331.1.exon2;Parent=MsaT041331.1
Chr8	CDS	4978196	4978274	4978196	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	4979392	4979460	4979392	ID=MsaT041331.1.exon3;Parent=MsaT041331.1
Chr8	CDS	4979392	4979460	4979392	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	4979695	4979784	4979695	ID=MsaT041331.1.exon4;Parent=MsaT041331.1
Chr8	CDS	4979695	4979784	4979695	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	4980343	4980481	4980343	ID=MsaT041331.1.exon5;Parent=MsaT041331.1
Chr8	CDS	4980343	4980481	4980343	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	4980602	4980704	4980602	ID=MsaT041331.1.exon6;Parent=MsaT041331.1
Chr8	CDS	4980602	4980704	4980602	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	4980837	4980889	4980837	ID=MsaT041331.1.exon7;Parent=MsaT041331.1
Chr8	CDS	4980837	4980889	4980837	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	4981317	4981383	4981317	ID=MsaT041331.1.exon8;Parent=MsaT041331.1
Chr8	CDS	4981317	4981383	4981317	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	4981734	4981845	4981734	ID=MsaT041331.1.exon9;Parent=MsaT041331.1
Chr8	CDS	4981734	4981845	4981734	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	4981949	4982014	4981949	ID=MsaT041331.1.exon10;Parent=MsaT041331.1
Chr8	CDS	4981949	4982014	4981949	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	4982131	4982199	4982131	ID=MsaT041331.1.exon11;Parent=MsaT041331.1
Chr8	CDS	4982131	4982199	4982131	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	4982268	4982328	4982268	ID=MsaT041331.1.exon12;Parent=MsaT041331.1
Chr8	CDS	4982268	4982328	4982268	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	5003063	5003097	5003063	ID=MsaT041331.1.exon13;Parent=MsaT041331.1
Chr8	CDS	5003063	5003097	5003063	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	5003213	5003258	5003213	ID=MsaT041331.1.exon14;Parent=MsaT041331.1
Chr8	CDS	5003213	5003258	5003213	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	5003763	5003838	5003763	ID=MsaT041331.1.exon15;Parent=MsaT041331.1
Chr8	CDS	5003763	5003838	5003763	ID=cds.MsaT041331.1;Parent=MsaT041331.1
Chr8	exon	5004411	5004540	5004411	ID=MsaT041331.1.exon16;Parent=MsaT041331.1
Chr8	CDS	5004411	5004540	5004411	ID=cds.MsaT041331.1;Parent=MsaT041331.1

Gene Sequence

>MsaT041331.1

ATGGAAAGGTATGAAATTTTGAAAGAGCTCGGAGATGGTTCTTGCGGCCATGTATATAAAGCCCGTGATATGAGAACTTTTGAGATTGTTGCTGTCAAAAGGTTGAAAAGAAAGTTTTGCTTTTGGGAAGAATACACAAATTTAAGAGAAATAAAGGCCCTCCGTAAAATGAATCACCCAAATATTATAAAGTTGAGAGAGGTTGTTAGAGAAAATAATGAGCTGTTTTTCATTTTTGAATACATGGATTGCAATCTTTATCAATTAATAAAAGAGAGAGAAAAACCCTTTTCAGAGGAAGAGATACGATGCTTTATGAAGCAAATGCTCCAAGGACTTAGTCACATGCACAAAAAAGGATTTTTTCACCGGGATTTAAAACCTGAAAATTTGCTGGTGACAAATGACGTTCTTAAAATTGCTGATTTTGGTTTGGCTAGAGAAGTATCATCAATGCCTCCATATACTCAATATGTTTCCACACGATGGTACCGAGCACCTGAAGTTTTGTTGCAGTCCCCATGCTATACTCCTGCTGTTGACATGTGGGCTATTGGTGCTATATTAGCCGAGCTTTTTACATTGACCCCCATATTTCCTGGTGAAAGTGAAATAGATCAAATGTACAAAATTTACTGCATTCTTGGTATGCCAGATTCAACTTGTTTCACCATAGGTGCGAACAACTCTAGGCTATTGGACTTTGTTGGCCATGAAGTGGTTCCGCCTGTGAAGCTTTCTGATATCATTCCAAATGCTAGCATGGAAGCTATAGATTTGATCACACAATTATTATCATGGGACCCATCAAGAAGGCCAGATGCGGATCAGTCACTGCAACACCCTTTTTTCCATGTGAATACAAGGGTTCCTCGTTCACTCAGTGATCCACTTGAGCTGAAGCTGAGTAACAAAAATGTGGTTCAAAATGCACGGCGGGGTATGGGAGAGAATATGCTATTTTGCTCGGATTTTAATGACCATTCAGACCAATCAGTTTTTTGGAGATTATTATCTCCTGATCAAAATGGAGTTCACAGCTCAACAGAGACTTCATTATCATTGTCATTCGGATCTGTTCAACACCAGCCAATTGGAGTTCCACAGACAGCAGGATTTACTTTTCAACCTTTGCAGCCTAACATCTTAACGACACCGTTTTTGACACTGTCTTCTCCGTACCAGCGCAGGCATTGCCTTTGA

Protein sequence

>MsaT041331.1

MERYEILKELGDGSCGHVYKARDMRTFEIVAVKRLKRKFCFWEEYTNLREIKALRKMNHPNIIKLREVVRENNELFFIFEYMDCNLYQLIKEREKPFSEEEIRCFMKQMLQGLSHMHKKGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLQSPCYTPAVDMWAIGAILAELFTLTPIFPGESEIDQMYKIYCILGMPDSTCFTIGANNSRLLDFVGHEVVPPVKLSDIIPNASMEAIDLITQLLSWDPSRRPDADQSLQHPFFHVNTRVPRSLSDPLELKLSNKNVVQNARRGMGENMLFCSDFNDHSDQSVFWRLLSPDQNGVHSSTETSLSLSFGSVQHQPIGVPQTAGFTFQPLQPNILTTPFLTLSSPYQRRHCL*