Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG041418 | XP_003627012.2 | 91.826 | 575 | 36 | 3 | 3 | 567 | 118 | 691 | 0.0 | 1072 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG041418 | sp|Q852L0|HD16N_ORYSJ | 69.217 | 575 | 161 | 7 | 3 | 566 | 137 | 706 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG041418 | tr|G7LFZ2|G7LFZ2_MEDTR | 91.826 | 575 | 36 | 3 | 3 | 567 | 118 | 691 | 0.0 | 1072 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG041418 | MtrunA17_Chr8g0340491 | 91.826 | 575 | 36 | 3 | 3 | 567 | 118 | 691 | 0.0 | 1072 |
| MsaG041418 | MtrunA17_Chr3g0140431 | 75.731 | 581 | 119 | 6 | 1 | 567 | 26 | 598 | 0.0 | 906 |
| MsaG041418 | MtrunA17_Chr1g0146301 | 73.575 | 579 | 131 | 6 | 3 | 567 | 114 | 684 | 0.0 | 884 |
| MsaG041418 | MtrunA17_Chr7g0214531 | 69.913 | 575 | 159 | 6 | 3 | 566 | 27 | 598 | 0.0 | 850 |
| MsaG041418 | MtrunA17_Chr7g0253211 | 68.000 | 575 | 169 | 6 | 3 | 566 | 314 | 884 | 0.0 | 818 |
| MsaG041418 | MtrunA17_Chr1g0213321 | 66.724 | 577 | 173 | 6 | 1 | 566 | 107 | 675 | 0.0 | 815 |
| MsaG041418 | MtrunA17_Chr4g0071031 | 36.749 | 283 | 155 | 7 | 13 | 289 | 9 | 273 | 1.42e-52 | 186 |
| MsaG041418 | MtrunA17_Chr1g0166821 | 37.456 | 283 | 153 | 6 | 13 | 289 | 10 | 274 | 3.55e-52 | 185 |
| MsaG041418 | MtrunA17_Chr2g0329981 | 36.396 | 283 | 156 | 7 | 13 | 289 | 9 | 273 | 5.78e-52 | 184 |
| MsaG041418 | MtrunA17_Chr2g0299661 | 36.786 | 280 | 159 | 6 | 13 | 289 | 9 | 273 | 7.09e-52 | 184 |
| MsaG041418 | MtrunA17_Chr1g0187571 | 37.234 | 282 | 155 | 6 | 13 | 289 | 10 | 274 | 5.28e-51 | 182 |
| MsaG041418 | MtrunA17_Chr1g0183631 | 36.525 | 282 | 157 | 7 | 13 | 289 | 9 | 273 | 8.76e-51 | 181 |
| MsaG041418 | MtrunA17_Chr7g0261501 | 36.879 | 282 | 156 | 6 | 13 | 289 | 9 | 273 | 1.27e-50 | 181 |
| MsaG041418 | MtrunA17_Chr8g0342821 | 36.957 | 276 | 151 | 8 | 13 | 283 | 9 | 266 | 1.47e-50 | 181 |
| MsaG041418 | MtrunA17_Chr8g0390211 | 35.461 | 282 | 160 | 6 | 13 | 289 | 9 | 273 | 1.61e-49 | 177 |
| MsaG041418 | MtrunA17_Chr6g0486611 | 34.752 | 282 | 162 | 6 | 13 | 289 | 9 | 273 | 2.93e-49 | 176 |
| MsaG041418 | MtrunA17_Chr1g0167261 | 36.620 | 284 | 156 | 7 | 13 | 289 | 10 | 276 | 2.12e-47 | 169 |
| MsaG041418 | MtrunA17_Chr1g0146151 | 34.397 | 282 | 163 | 6 | 13 | 289 | 9 | 273 | 3.74e-47 | 170 |
| MsaG041418 | MtrunA17_Chr3g0140071 | 34.043 | 282 | 164 | 7 | 13 | 289 | 9 | 273 | 6.70e-45 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG041418 | AT2G25760.1 | 73.276 | 580 | 141 | 4 | 1 | 567 | 95 | 673 | 0.0 | 907 |
| MsaG041418 | AT2G25760.2 | 72.556 | 583 | 143 | 5 | 1 | 567 | 95 | 676 | 0.0 | 896 |
| MsaG041418 | AT3G13670.1 | 68.048 | 579 | 169 | 6 | 3 | 567 | 127 | 703 | 0.0 | 831 |
| MsaG041418 | AT5G18190.2 | 67.652 | 575 | 171 | 6 | 3 | 566 | 120 | 690 | 0.0 | 813 |
| MsaG041418 | AT5G18190.1 | 67.652 | 575 | 171 | 6 | 3 | 566 | 120 | 690 | 0.0 | 813 |
| MsaG041418 | AT3G03940.1 | 66.957 | 575 | 175 | 6 | 3 | 566 | 130 | 700 | 0.0 | 813 |
| MsaG041418 | AT3G03930.1 | 58.621 | 261 | 93 | 5 | 317 | 566 | 31 | 287 | 2.76e-97 | 298 |
| MsaG041418 | AT3G23340.1 | 37.589 | 282 | 154 | 6 | 13 | 289 | 9 | 273 | 1.14e-52 | 186 |
| MsaG041418 | AT1G03930.1 | 36.879 | 282 | 156 | 7 | 13 | 289 | 9 | 273 | 1.65e-52 | 186 |
| MsaG041418 | AT5G44100.1 | 36.170 | 282 | 158 | 6 | 13 | 289 | 9 | 273 | 2.93e-52 | 186 |
| MsaG041418 | AT5G44100.2 | 36.170 | 282 | 158 | 6 | 13 | 289 | 9 | 273 | 2.93e-52 | 186 |
| MsaG041418 | AT4G26100.1 | 36.749 | 283 | 155 | 7 | 13 | 289 | 9 | 273 | 8.70e-52 | 184 |
| MsaG041418 | AT4G28540.1 | 37.234 | 282 | 155 | 7 | 13 | 289 | 13 | 277 | 1.66e-51 | 184 |
| MsaG041418 | AT4G14340.2 | 36.879 | 282 | 156 | 6 | 13 | 289 | 15 | 279 | 3.53e-51 | 180 |
| MsaG041418 | AT2G19470.1 | 37.143 | 280 | 158 | 6 | 13 | 289 | 9 | 273 | 3.83e-51 | 182 |
| MsaG041418 | AT5G43320.2 | 37.234 | 282 | 155 | 6 | 13 | 289 | 9 | 273 | 4.56e-51 | 180 |
| MsaG041418 | AT5G43320.3 | 37.234 | 282 | 155 | 6 | 13 | 289 | 9 | 273 | 4.56e-51 | 180 |
| MsaG041418 | AT5G43320.1 | 37.234 | 282 | 155 | 6 | 13 | 289 | 9 | 273 | 4.61e-51 | 182 |
| MsaG041418 | AT5G57015.1 | 36.396 | 283 | 156 | 7 | 13 | 289 | 9 | 273 | 1.59e-50 | 180 |
| MsaG041418 | AT4G28860.2 | 35.461 | 282 | 160 | 6 | 13 | 289 | 9 | 273 | 1.60e-50 | 178 |
| MsaG041418 | AT4G14340.1 | 37.589 | 282 | 154 | 7 | 13 | 289 | 15 | 279 | 2.19e-50 | 180 |
| MsaG041418 | AT4G28860.1 | 35.461 | 282 | 160 | 6 | 13 | 289 | 9 | 273 | 4.02e-50 | 178 |
| MsaG041418 | AT4G28880.3 | 35.816 | 282 | 159 | 6 | 13 | 289 | 9 | 273 | 8.09e-50 | 177 |
| MsaG041418 | AT4G28880.2 | 35.816 | 282 | 159 | 6 | 13 | 289 | 9 | 273 | 8.09e-50 | 177 |
| MsaG041418 | AT4G28880.1 | 35.816 | 282 | 159 | 6 | 13 | 289 | 9 | 273 | 8.09e-50 | 177 |
| MsaG041418 | AT4G28880.4 | 35.816 | 282 | 159 | 6 | 13 | 289 | 9 | 273 | 8.09e-50 | 177 |
| MsaG041418 | AT1G04440.1 | 35.816 | 282 | 159 | 6 | 13 | 289 | 9 | 273 | 3.60e-49 | 177 |
| MsaG041418 | AT1G72710.1 | 36.042 | 283 | 156 | 8 | 13 | 289 | 9 | 272 | 3.64e-49 | 177 |
| MsaG041418 | AT3G23340.2 | 38.521 | 257 | 143 | 6 | 38 | 289 | 13 | 259 | 1.13e-47 | 172 |
| MsaG041418 | AT4G08800.1 | 33.571 | 280 | 136 | 7 | 13 | 289 | 9 | 241 | 6.66e-39 | 144 |
Find 139 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTCTTCATCGTACTTTA+AGG | 0.153231 | 8:+6497973 | None:intergenic |
| TGTTCAACAAACTCTTTAAA+AGG | 0.210064 | 8:+6498004 | None:intergenic |
| TGTATGATTGCTGCGCATAC+TGG | 0.265771 | 8:+6496629 | None:intergenic |
| AAACTTGGCAAGGGTGGATT+TGG | 0.288608 | 8:-6499688 | MsaT041418.1:CDS |
| GTATTCAGTGGCCTAATGTC+TGG | 0.288661 | 8:+6497902 | None:intergenic |
| TCGGGCTTGCAGCTACTAAA+TGG | 0.289201 | 8:-6498454 | MsaT041418.1:intron |
| TGTAAGCAGGAGGGATGATT+TGG | 0.299076 | 8:-6498241 | MsaT041418.1:CDS |
| ACCTGAAAAGATCAGGCTTT+TGG | 0.301833 | 8:+6498396 | None:intergenic |
| GCAAGTGTTCATGCACATTT+GGG | 0.305910 | 8:-6498270 | MsaT041418.1:CDS |
| TGCAAGTGTTCATGCACATT+TGG | 0.306470 | 8:-6498271 | MsaT041418.1:CDS |
| TCTCTCTTTGATGGGATTGT+TGG | 0.307967 | 8:-6497932 | MsaT041418.1:CDS |
| TACTATATCACTGCAGTTGC+AGG | 0.322061 | 8:-6496782 | MsaT041418.1:CDS |
| TGGCCACAGCAGGGCCCAAA+TGG | 0.322638 | 8:-6496537 | MsaT041418.1:CDS |
| AAATACATTTCTCTCTTTGA+TGG | 0.338871 | 8:-6497941 | MsaT041418.1:CDS |
| GGGCCTGTGGGCCTTAATAA+TGG | 0.345557 | 8:-6497047 | MsaT041418.1:CDS |
| CACATCGACTGCTGCAACTT+GGG | 0.347827 | 8:-6496311 | MsaT041418.1:CDS |
| GTGATTCATTTCCTTTCAAA+TGG | 0.348696 | 8:-6496600 | MsaT041418.1:CDS |
| GTCGATGTGATTCGGTAAAC+TGG | 0.348857 | 8:+6496325 | None:intergenic |
| TGTCCCTGCATCCATTATTA+AGG | 0.355727 | 8:+6497036 | None:intergenic |
| ACAAAGGATATCAGGTTTGC+AGG | 0.362919 | 8:-6498075 | MsaT041418.1:CDS |
| AAATTGTTCCTGGTAGATCT+TGG | 0.375545 | 8:-6498570 | MsaT041418.1:CDS |
| TTGGTCCAAACCCAGACATT+AGG | 0.375997 | 8:-6497913 | MsaT041418.1:CDS |
| CATTGAAGCAATATCCATAT+TGG | 0.378020 | 8:-6498891 | MsaT041418.1:CDS |
| AGTGGCCTAATGTCTGGGTT+TGG | 0.378824 | 8:+6497908 | None:intergenic |
| CCCACCTTAACATGAGTATT+AGG | 0.379485 | 8:+6496208 | None:intergenic |
| AGAGTGCATCTTCTCCAATA+TGG | 0.379754 | 8:+6498877 | None:intergenic |
| GTAGTTATGTCTCGTGGGGC+AGG | 0.381516 | 8:-6496511 | MsaT041418.1:CDS |
| GCGCAGATTATGGATATTCT+AGG | 0.384310 | 8:-6499089 | MsaT041418.1:intron |
| TCGTACGCTTCCCACTCTTC+TGG | 0.386871 | 8:+6499434 | None:intergenic |
| AGACATAACTACTCCCCATT+TGG | 0.388320 | 8:+6496522 | None:intergenic |
| TAGCAGTGTTGCTTCATCTC+AGG | 0.389104 | 8:-6497068 | MsaT041418.1:CDS |
| AACTGGACCTGAAGCTTTAG+AGG | 0.393575 | 8:-6499617 | MsaT041418.1:intron |
| TTCTTCGAAGTCGTCTTCCT+TGG | 0.394734 | 8:-6498191 | MsaT041418.1:CDS |
| CAACAAACTCTTTAAAAGGC+TGG | 0.396910 | 8:+6498008 | None:intergenic |
| GGACATACCTCTAAAGCTTC+AGG | 0.399023 | 8:+6499610 | None:intergenic |
| GGGAGAAAACAAAGGATATC+AGG | 0.402180 | 8:-6498083 | MsaT041418.1:CDS |
| TTCCTGGTAGATCTTGGATT+GGG | 0.405911 | 8:-6498564 | MsaT041418.1:intron |
| CAATATGGATATTGCTTCAA+TGG | 0.411978 | 8:+6498892 | None:intergenic |
| TGCTTCATCTCAGGGCCTGT+GGG | 0.413274 | 8:-6497059 | MsaT041418.1:CDS |
| TTTCAGTATGTCCACTGAAA+TGG | 0.414503 | 8:-6498927 | MsaT041418.1:intron |
| GGAAATTTGAATGAGAGAAC+TGG | 0.422299 | 8:-6499634 | MsaT041418.1:CDS |
| GACATAACTACTCCCCATTT+GGG | 0.426694 | 8:+6496523 | None:intergenic |
| AACAAACTCTTTAAAAGGCT+GGG | 0.435906 | 8:+6498009 | None:intergenic |
| GGCCACAGCAGGGCCCAAAT+GGG | 0.439996 | 8:-6496536 | MsaT041418.1:CDS |
| GCAGTTGCAGGAATTGCAAA+TGG | 0.440109 | 8:-6496770 | MsaT041418.1:CDS |
| TCGTCCTGCAGCTTATTCTC+TGG | 0.442854 | 8:+6496262 | None:intergenic |
| AGCAGTGTTGCTTCATCTCA+GGG | 0.451254 | 8:-6497067 | MsaT041418.1:CDS |
| AATAAATACCTGAAAAGATC+AGG | 0.451526 | 8:+6498389 | None:intergenic |
| AATACATTTCTCTCTTTGAT+GGG | 0.456247 | 8:-6497940 | MsaT041418.1:CDS |
| TTGCTTCATCTCAGGGCCTG+TGG | 0.457116 | 8:-6497060 | MsaT041418.1:CDS |
| TCACATCGACTGCTGCAACT+TGG | 0.459764 | 8:-6496312 | MsaT041418.1:CDS |
| TCCCCATTTGGGCCCTGCTG+TGG | 0.465176 | 8:+6496534 | None:intergenic |
| TACATTGCCTCTATTTGCTA+TGG | 0.467256 | 8:-6496089 | MsaT041418.1:CDS |
| AGTGTATACCTTTGTTTCAT+CGG | 0.467387 | 8:+6497636 | None:intergenic |
| GAATACAGAAGGTGCACAAA+AGG | 0.476772 | 8:-6497885 | MsaT041418.1:intron |
| GTAACTTCAATGGCCACAGC+AGG | 0.478584 | 8:-6496547 | MsaT041418.1:CDS |
| GTATGATTGCTGCGCATACT+GGG | 0.482995 | 8:+6496630 | None:intergenic |
| TTAATAATGGATGCAGGGAC+AGG | 0.483674 | 8:-6497034 | MsaT041418.1:CDS |
| TCTTCCTTGGAAAGGATACC+AGG | 0.487912 | 8:-6498178 | MsaT041418.1:intron |
| TATTCAGTGGCCTAATGTCT+GGG | 0.488062 | 8:+6497903 | None:intergenic |
| AAATGGCGGGATAGTACAAC+TGG | 0.491011 | 8:-6498437 | MsaT041418.1:CDS |
| TGATTCATTTCCTTTCAAAT+GGG | 0.493009 | 8:-6496599 | MsaT041418.1:CDS |
| ACACTAATCCACTGGTTCGC+TGG | 0.494569 | 8:+6497675 | None:intergenic |
| GACCTAGCTTGTATGATGAA+TGG | 0.497272 | 8:-6499067 | MsaT041418.1:CDS |
| TCAGGTTTGCAGGAAGAAGA+TGG | 0.499604 | 8:-6498065 | MsaT041418.1:CDS |
| GTTCCTGGTAGATCTTGGAT+TGG | 0.502343 | 8:-6498565 | MsaT041418.1:CDS |
| TTGCAGCAGTCGATGTGATT+CGG | 0.503800 | 8:+6496317 | None:intergenic |
| AGGGACAGGTTTCACTTCCC+AGG | 0.506444 | 8:-6497020 | MsaT041418.1:CDS |
| AAGCTTGTTGGTCATAAAAG+AGG | 0.506773 | 8:-6497756 | MsaT041418.1:CDS |
| TAGTACAACTGGTTTGCATA+AGG | 0.507598 | 8:-6498426 | MsaT041418.1:CDS |
| TGGGCCTTAATAATGGATGC+AGG | 0.508902 | 8:-6497040 | MsaT041418.1:CDS |
| TTTGAGCACGCAAGTAGTAA+AGG | 0.518465 | 8:-6499473 | MsaT041418.1:CDS |
| CGCTTGTGAATCCCTTCACT+AGG | 0.518944 | 8:+6496356 | None:intergenic |
| CATCATCTTCTGAAGCCAAT+CGG | 0.526443 | 8:+6497733 | None:intergenic |
| AGCACCCTCGGTGGAAGTCA+TGG | 0.528225 | 8:-6499300 | MsaT041418.1:CDS |
| TGGAAGTCATGGTGTGCCAC+AGG | 0.533084 | 8:-6499289 | MsaT041418.1:CDS |
| GGATTTGGTCAAGTATATGT+TGG | 0.538392 | 8:-6499673 | MsaT041418.1:CDS |
| TCATTAGTAGTAATGTCTAA+AGG | 0.539644 | 8:-6496743 | MsaT041418.1:intron |
| TAGTTATGTCTCGTGGGGCA+GGG | 0.540494 | 8:-6496510 | MsaT041418.1:CDS |
| TGTGCACCTTCTGTATTCAG+TGG | 0.543491 | 8:+6497890 | None:intergenic |
| GTTGGTCGGCGTGTTTCTGA+TGG | 0.545961 | 8:-6499655 | MsaT041418.1:CDS |
| GCAAGATGGCTACTATATCA+TGG | 0.550126 | 8:-6499250 | MsaT041418.1:intron |
| CGAAGTCGTCTTCCTTGGAA+AGG | 0.554716 | 8:-6498186 | MsaT041418.1:CDS |
| TTGGTCAAGTATATGTTGGT+CGG | 0.554790 | 8:-6499669 | MsaT041418.1:CDS |
| GGTACGTCCATAGCAAATAG+AGG | 0.556422 | 8:+6496082 | None:intergenic |
| GGGGAGTAGTTATGTCTCGT+GGG | 0.557578 | 8:-6496516 | MsaT041418.1:CDS |
| CAGTTGCAGGAATTGCAAAT+GGG | 0.559687 | 8:-6496769 | MsaT041418.1:CDS |
| TACTCAGAACAAAAGCAGCT+TGG | 0.563974 | 8:+6496287 | None:intergenic |
| CAATGGACCGCCAGAAGAGT+GGG | 0.564362 | 8:-6499444 | MsaT041418.1:CDS |
| GTGAAGGGATTCACAAGCGG+TGG | 0.565396 | 8:-6496352 | MsaT041418.1:CDS |
| CATTGTAAACACTAATCCAC+TGG | 0.570715 | 8:+6497667 | None:intergenic |
| TGGGGAGTAGTTATGTCTCG+TGG | 0.573591 | 8:-6496517 | MsaT041418.1:CDS |
| CATCCATTATTAAGGCCCAC+AGG | 0.574889 | 8:+6497044 | None:intergenic |
| ACAAACTCTTTAAAAGGCTG+GGG | 0.575409 | 8:+6498010 | None:intergenic |
| GCCACAGCAGGGCCCAAATG+GGG | 0.575703 | 8:-6496535 | MsaT041418.1:CDS |
| TGGTCATAAAAGAGGCCGAT+TGG | 0.576508 | 8:-6497748 | MsaT041418.1:CDS |
| TTGCCTTTGTAATGTACCTG+TGG | 0.576625 | 8:+6499273 | None:intergenic |
| ACGAAACTCAAGAAACACTA+AGG | 0.576890 | 8:-6496243 | MsaT041418.1:CDS |
| TATTCCAGAGAATAAGCTGC+AGG | 0.578410 | 8:-6496266 | MsaT041418.1:CDS |
| CAGGTTTGCAGGAAGAAGAT+GGG | 0.578830 | 8:-6498064 | MsaT041418.1:CDS |
| CATTACAAAGGCAAGCAAGA+TGG | 0.579097 | 8:-6499264 | MsaT041418.1:CDS |
| GGATCGGAAGTCTCAAGAAA+CGG | 0.579896 | 8:+6496061 | None:intergenic |
| TGGGTTTACCAGCGAACCAG+TGG | 0.579970 | 8:-6497683 | MsaT041418.1:CDS |
| TTCCATTCATCATACAAGCT+AGG | 0.582966 | 8:+6499065 | None:intergenic |
| ATTTGGGGAGAAATGTAAGC+AGG | 0.584848 | 8:-6498254 | MsaT041418.1:CDS |
| ACAATGGACCGCCAGAAGAG+TGG | 0.587557 | 8:-6499445 | MsaT041418.1:CDS |
| GCTTGCAGCTACTAAATGGC+GGG | 0.587846 | 8:-6498450 | MsaT041418.1:intron |
| GCACATTGACAAAGGAAATG+AGG | 0.597073 | 8:-6497104 | MsaT041418.1:CDS |
| GGGGAGAAATGTAAGCAGGA+GGG | 0.597338 | 8:-6498250 | MsaT041418.1:CDS |
| CTCGTAGACCGATGAAACAA+AGG | 0.600975 | 8:-6497644 | MsaT041418.1:intron |
| TATATGGGTAGGTATGTGCA+TGG | 0.608359 | 8:-6498648 | MsaT041418.1:intron |
| TTGGAGAAGATGCACTCTCG+AGG | 0.609670 | 8:-6498872 | MsaT041418.1:CDS |
| AGTAGTAAAGGATGTAACAA+TGG | 0.615283 | 8:-6499461 | MsaT041418.1:CDS |
| CACACCATGACTTCCACCGA+GGG | 0.617170 | 8:+6499296 | None:intergenic |
| GGGCCTTAATAATGGATGCA+GGG | 0.621365 | 8:-6497039 | MsaT041418.1:CDS |
| TGAAGGGATTCACAAGCGGT+GGG | 0.622289 | 8:-6496351 | MsaT041418.1:CDS |
| CTATCACAGCACATTGACAA+AGG | 0.627189 | 8:-6497112 | MsaT041418.1:CDS |
| AGCAAATAGAGGCAATGTAG+AGG | 0.629682 | 8:+6496093 | None:intergenic |
| TGGGGAGAAATGTAAGCAGG+AGG | 0.632710 | 8:-6498251 | MsaT041418.1:CDS |
| TAACTTCAATGGCCACAGCA+GGG | 0.633038 | 8:-6496546 | MsaT041418.1:CDS |
| TACCCAATCCAAGATCTACC+AGG | 0.633951 | 8:+6498562 | None:intergenic |
| CAAACCTGGTATCCTTTCCA+AGG | 0.635642 | 8:+6498174 | None:intergenic |
| ATTGACAAAGGAAATGAGGA+TGG | 0.636401 | 8:-6497100 | MsaT041418.1:CDS |
| TGGAGAAGATGCACTCTCGA+GGG | 0.640105 | 8:-6498871 | MsaT041418.1:intron |
| GGCTTGCAGCTACTAAATGG+CGG | 0.641749 | 8:-6498451 | MsaT041418.1:intron |
| AATACAAGCAACCATTTCAG+TGG | 0.645015 | 8:+6498916 | None:intergenic |
| TACGCTTCCCACTCTTCTGG+CGG | 0.651325 | 8:+6499437 | None:intergenic |
| ATTAGGCCACTGAATACAGA+AGG | 0.651859 | 8:-6497896 | MsaT041418.1:CDS |
| TGTGCATGGAGATGTGAAGC+CGG | 0.653590 | 8:-6498634 | MsaT041418.1:CDS |
| TTTCTCATCGGGTGTCCCAG+AGG | 0.662778 | 8:+6498593 | None:intergenic |
| GGGAGTAGTTATGTCTCGTG+GGG | 0.665965 | 8:-6496515 | MsaT041418.1:CDS |
| GCTTGTGAATCCCTTCACTA+GGG | 0.666181 | 8:+6496357 | None:intergenic |
| GTGCCACAGGTACATTACAA+AGG | 0.680188 | 8:-6499276 | MsaT041418.1:CDS |
| CAAGTGTTCATGCACATTTG+GGG | 0.689755 | 8:-6498269 | MsaT041418.1:CDS |
| AAACAGCAAAGGTTCTCTGG+AGG | 0.698314 | 8:+6498037 | None:intergenic |
| CTAGTGAAGGGATTCACAAG+CGG | 0.705426 | 8:-6496355 | MsaT041418.1:CDS |
| TATTTGTGCAGCACCCTCGG+TGG | 0.705685 | 8:-6499309 | MsaT041418.1:intron |
| GTGCATGAACACTTGCATAG+CGG | 0.727849 | 8:+6498277 | None:intergenic |
| GCACACCATGACTTCCACCG+AGG | 0.742653 | 8:+6499295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 6496073 | 6500464 | 6496073 | ID=MsaG041418 |
| Chr8 | mRNA | 6496073 | 6500464 | 6496073 | ID=MsaT041418.1;Parent=MsaG041418 |
| Chr8 | exon | 6496073 | 6496132 | 6496073 | ID=MsaT041418.1.exon16;Parent=MsaT041418.1 |
| Chr8 | CDS | 6496073 | 6496132 | 6496073 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6496213 | 6496389 | 6496213 | ID=MsaT041418.1.exon15;Parent=MsaT041418.1 |
| Chr8 | CDS | 6496213 | 6496389 | 6496213 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6496498 | 6496655 | 6496498 | ID=MsaT041418.1.exon14;Parent=MsaT041418.1 |
| Chr8 | CDS | 6496498 | 6496655 | 6496498 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6496744 | 6496819 | 6496744 | ID=MsaT041418.1.exon13;Parent=MsaT041418.1 |
| Chr8 | CDS | 6496744 | 6496819 | 6496744 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6496988 | 6497162 | 6496988 | ID=MsaT041418.1.exon12;Parent=MsaT041418.1 |
| Chr8 | CDS | 6496988 | 6497162 | 6496988 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6497645 | 6497775 | 6497645 | ID=MsaT041418.1.exon11;Parent=MsaT041418.1 |
| Chr8 | CDS | 6497645 | 6497775 | 6497645 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6497886 | 6498104 | 6497886 | ID=MsaT041418.1.exon10;Parent=MsaT041418.1 |
| Chr8 | CDS | 6497886 | 6498104 | 6497886 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6498179 | 6498308 | 6498179 | ID=MsaT041418.1.exon9;Parent=MsaT041418.1 |
| Chr8 | CDS | 6498179 | 6498308 | 6498179 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6498398 | 6498464 | 6498398 | ID=MsaT041418.1.exon8;Parent=MsaT041418.1 |
| Chr8 | CDS | 6498398 | 6498464 | 6498398 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6498565 | 6498659 | 6498565 | ID=MsaT041418.1.exon7;Parent=MsaT041418.1 |
| Chr8 | CDS | 6498565 | 6498659 | 6498565 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6498872 | 6498943 | 6498872 | ID=MsaT041418.1.exon6;Parent=MsaT041418.1 |
| Chr8 | CDS | 6498872 | 6498943 | 6498872 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6499050 | 6499105 | 6499050 | ID=MsaT041418.1.exon5;Parent=MsaT041418.1 |
| Chr8 | CDS | 6499050 | 6499105 | 6499050 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6499251 | 6499320 | 6499251 | ID=MsaT041418.1.exon4;Parent=MsaT041418.1 |
| Chr8 | CDS | 6499251 | 6499320 | 6499251 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6499434 | 6499507 | 6499434 | ID=MsaT041418.1.exon3;Parent=MsaT041418.1 |
| Chr8 | CDS | 6499434 | 6499507 | 6499434 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6499618 | 6499749 | 6499618 | ID=MsaT041418.1.exon2;Parent=MsaT041418.1 |
| Chr8 | CDS | 6499618 | 6499749 | 6499618 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Chr8 | exon | 6500453 | 6500464 | 6500453 | ID=MsaT041418.1.exon1;Parent=MsaT041418.1 |
| Chr8 | CDS | 6500453 | 6500464 | 6500453 | ID=cds.MsaT041418.1;Parent=MsaT041418.1 |
| Gene Sequence |
| Protein sequence |