AlfalfaGEDB | MsaG041435

M. sativa ssp. caerulea / MsaG041435

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030100 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0060627 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0098657 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041435	XP_003627012.2	92.619	691	47	1	1	687	1	691	0.0	1266

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041435	sp\|Q852L0\|HD16N_ORYSJ	67.994	653	201	6	36	687	62	707	0.0	923

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041435	tr\|G7LFZ2\|G7LFZ2_MEDTR	92.619	691	47	1	1	687	1	691	0.0	1266

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041435	MtrunA17_Chr8g0340491	92.619	691	47	1	1	687	1	691	0.0	1266
MsaG041435	MtrunA17_Chr3g0140431	79.174	605	115	3	87	687	1	598	0.0	1016
MsaG041435	MtrunA17_Chr1g0146301	71.278	665	167	6	36	687	31	684	0.0	986
MsaG041435	MtrunA17_Chr7g0214531	72.788	599	158	4	91	687	4	599	0.0	944
MsaG041435	MtrunA17_Chr7g0253211	67.073	656	205	6	34	687	239	885	0.0	919
MsaG041435	MtrunA17_Chr1g0213321	65.714	665	196	9	37	686	28	675	0.0	909
MsaG041435	MtrunA17_Chr4g0071031	36.749	283	155	7	124	400	9	273	4.27e-53	189
MsaG041435	MtrunA17_Chr1g0166821	37.456	283	153	6	124	400	10	274	9.34e-53	189
MsaG041435	MtrunA17_Chr2g0329981	36.396	283	156	7	124	400	9	273	9.46e-53	189
MsaG041435	MtrunA17_Chr2g0299661	36.786	280	159	6	124	400	9	273	1.42e-52	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041435	AT2G25760.1	69.420	690	191	4	1	687	1	673	0.0	1022
MsaG041435	AT2G25760.2	68.831	693	193	5	1	687	1	676	0.0	1012
MsaG041435	AT3G13670.1	66.228	684	216	9	13	687	26	703	0.0	934
MsaG041435	AT3G03940.1	62.833	713	227	6	1	687	1	701	0.0	922
MsaG041435	AT5G18190.2	63.845	697	236	5	1	687	1	691	0.0	921
MsaG041435	AT5G18190.1	63.845	697	236	5	1	687	1	691	0.0	921
MsaG041435	AT3G03930.1	64.231	260	89	2	428	686	31	287	1.59e-118	356
MsaG041435	AT3G23340.1	37.456	283	153	6	124	400	9	273	2.14e-53	190
MsaG041435	AT1G03930.1	36.749	283	155	7	124	400	9	273	6.83e-53	189
MsaG041435	AT5G44100.1	36.071	280	161	5	124	400	9	273	9.97e-53	189

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Find 185 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCATAGGTTCTCTGG+AGG	0.692660	8:-6810472	None:intergenic
AAACTTGGCAAGGGTGGATT+TGG	0.288608	8:+6808786	MsaT041435.1:CDS
AAATACATTTCTCTCTTTGA+TGG	0.338871	8:+6810568	MsaT041435.1:CDS
AAATTGTTCCTGGTAGATCT+TGG	0.375545	8:+6809901	MsaT041435.1:CDS
AACAAACTCTTTAAAAGGCT+TGG	0.332669	8:-6810500	None:intergenic
AACTCCGGTTGAAGTGGAGG+CGG	0.582166	8:+6806886	MsaT041435.1:CDS
AACTGGACCTGAAGCTTTAG+AGG	0.393575	8:+6808857	MsaT041435.1:CDS
AAGACGGCGGCGTGCAGCTG+CGG	0.469475	8:+6806922	MsaT041435.1:CDS
AAGCTTGTTGGTCATAAAAG+AGG	0.506773	8:+6810742	MsaT041435.1:intron
AATACAAGCAACCATTTCAG+TGG	0.645015	8:-6809557	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	6806806	6812413	6806806	ID=MsaG041435
Chr8	mRNA	6806806	6812413	6806806	ID=MsaT041435.1;Parent=MsaG041435
Chr8	exon	6806806	6807150	6806806	ID=MsaT041435.1.exon1;Parent=MsaT041435.1
Chr8	CDS	6806806	6807150	6806806	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6808747	6808878	6808747	ID=MsaT041435.1.exon2;Parent=MsaT041435.1
Chr8	CDS	6808747	6808878	6808747	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6808989	6809062	6808989	ID=MsaT041435.1.exon3;Parent=MsaT041435.1
Chr8	CDS	6808989	6809062	6808989	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6809176	6809245	6809176	ID=MsaT041435.1.exon4;Parent=MsaT041435.1
Chr8	CDS	6809176	6809245	6809176	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6809392	6809447	6809392	ID=MsaT041435.1.exon5;Parent=MsaT041435.1
Chr8	CDS	6809392	6809447	6809392	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6809552	6809623	6809552	ID=MsaT041435.1.exon6;Parent=MsaT041435.1
Chr8	CDS	6809552	6809623	6809552	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6809834	6809928	6809834	ID=MsaT041435.1.exon7;Parent=MsaT041435.1
Chr8	CDS	6809834	6809928	6809834	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6810030	6810096	6810030	ID=MsaT041435.1.exon8;Parent=MsaT041435.1
Chr8	CDS	6810030	6810096	6810030	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6810223	6810352	6810223	ID=MsaT041435.1.exon9;Parent=MsaT041435.1
Chr8	CDS	6810223	6810352	6810223	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6810427	6810645	6810427	ID=MsaT041435.1.exon10;Parent=MsaT041435.1
Chr8	CDS	6810427	6810645	6810427	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6810745	6810875	6810745	ID=MsaT041435.1.exon11;Parent=MsaT041435.1
Chr8	CDS	6810745	6810875	6810745	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6811327	6811501	6811327	ID=MsaT041435.1.exon12;Parent=MsaT041435.1
Chr8	CDS	6811327	6811501	6811327	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6811657	6811747	6811657	ID=MsaT041435.1.exon13;Parent=MsaT041435.1
Chr8	CDS	6811657	6811747	6811657	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6811836	6811993	6811836	ID=MsaT041435.1.exon14;Parent=MsaT041435.1
Chr8	CDS	6811836	6811993	6811836	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6812085	6812273	6812085	ID=MsaT041435.1.exon15;Parent=MsaT041435.1
Chr8	CDS	6812085	6812273	6812085	ID=cds.MsaT041435.1;Parent=MsaT041435.1
Chr8	exon	6812354	6812413	6812354	ID=MsaT041435.1.exon16;Parent=MsaT041435.1
Chr8	CDS	6812354	6812413	6812354	ID=cds.MsaT041435.1;Parent=MsaT041435.1

Gene Sequence

>MsaT041435.1

ATGCCGGTAATGCGTAGTGGAGCGCGCCGGGGACGGCCAACGAAGCGACAGTCACAGAAGAAGCAGGAAGAGGAGAAGAAAACTCCGGTTGAAGTGGAGGCGGTTGCGACGAGAACAAGACGGCGGCGTGCAGCTGCGGCGGCGGCGGTTGAAGAGGAGCCGGTAGCGGTAAATGATGACGTAGCTGTTGTTGTGGCCGTAGAGGAGAAGGAGGAGGAATCGGGTGGAGCGGAGAAGGAAGTGATAGAGGAGAAACAGATGGAGGAATTTGATCGTGGTGGTCATAGCAATGATAAGGCTAATGCTGGTGAAGAAGATAGTAATGGCTTTGTTATTCCTGAAAAGGTTCAAGTTGGTGCTTCTCCTTTGTATAAAACAGAGAAAAAACTTGGCAAGGGTGGATTTGGTCAAGTATATGTTGGTCGGCGTGTTTCTGATGGAAGTTTGAATGAGAGAACTGGACCTGAAGCTTTAGAGGTGGCCATAAAATTTGAGCACACAAGTAGTAAAGGATGTAACAAAGGACCGCCAGAAGAGTGGAAAGCGTACGACACCCTCGGTGGAAGTCATGGTGTGCCACAGGTACATTACAAAGGCAAGCAAGATGGCTACTATATCATGATTATGGATATTCTAGGACCTAGCTTGTATGATGAATGGAATAATAAATCTCACACTATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCCATATTGGAGAAGATGCACTCTCGAGGGTATGTGCATGGAGATGTGAAGCCGGAAAATTTTCTGCTTGGCGCCTCGGGGACACCCGATGAGAAAAAATTGTTCCTGGTAGATCTTGGATTGGCTACTGAATGGCGGGATAGTACAACTGGTTTGCAAGTGGACTATGACCAAAGGCCTGATATTTTCAGGGGCACAGTCCGCTATGCAAGTGTGCATTCACATTTGGGGAGAAATGGAAGCAGGAGGGATGATTTGGAATCTCTTGCATATACACTGATTTTTCTTCTCCGAGGTCGTCTTCCTTGGCAAGGATACCAGGGAGAAAACAAAGGATATCAGGTTTGCAGGAAGAAGATGGGAACGCCTCCAGAGAACCTATGCTGTTTTTGTCCCAAGCCTTTTAAAGAGTTTGTTGAACATGTAGTGACCTTAAAGTATGATGAAGAGCCCAACTATGCAAAATACATTTCTCTCTTTGATGGGATTGTTGGTCCAAACCCAGACATTAGGCCACTGAATACAGAAGGTGCACAAAAGCTTGTTGGTCATAAAAGAGGCCGATTGGCTTCAGAAGATGATGATGAACAGCCCAAAAAGAAGGTTCGAGTGGGTTTACCAGCGAACCAATGGATTAGTGTTTACAATGCTCGTAGACCGATGAAACAAAGATATCACTACAATGTGTCAAGTACAAGACTATCACAGCATATTGACAAAGGAAATGAGGATGGCTTATATATTAGCAGTGTTGCTTCATCTCAGGGCCTGTGGGCCTTAATAATGGATGCAGGGACAGGTTTCACTTCCCAAGTTTATGAATTCTCCCCCCAATTTTTCCATAAGGAATGGATCATGGAGCAGTGGGAAAAAAATTACTATATCACTGCAGTTGCAGGAATTGCAAATGGGAGTTCATTAGTAGTAATGTCTAAAGGCACCCAGTATGTGCAGCAATCATACAAAGTTAGTGATTCATTTCCTTTCAAATGGATTAGCAAAAAGTGGAGGGAGAAGTTTTTTGTAACTTCAATGGCCACAGCAGGGCCCAAATGGGGAGTAGTTATGTCTAAAGGGACAGGGTTTTCAAAACAGGCGGTCGAATTAGATTTTCTGTATCCTAGTGAAGGGATTCACAAGCGGTGGGAGTCTGGTTACCGAATCACATCGACTGCTGCAACTTGGGACCAAGCTGCTTTTGTTCTGAGTATTCCAGAGAATAAGCTGCAGGACGAAACTCAAGAAACACTAAGGACTACTACTTTTCCTAGTACTCATGTTAAGGAGAAGTGGGCTAAGAACCTCTACATTGCCTCTATTTGCTACGGACGTACCGTTTCTTGA

Protein sequence

>MsaT041435.1

MPVMRSGARRGRPTKRQSQKKQEEEKKTPVEVEAVATRTRRRRAAAAAAVEEEPVAVNDDVAVVVAVEEKEEESGGAEKEVIEEKQMEEFDRGGHSNDKANAGEEDSNGFVIPEKVQVGASPLYKTEKKLGKGGFGQVYVGRRVSDGSLNERTGPEALEVAIKFEHTSSKGCNKGPPEEWKAYDTLGGSHGVPQVHYKGKQDGYYIMIMDILGPSLYDEWNNKSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGASGTPDEKKLFLVDLGLATEWRDSTTGLQVDYDQRPDIFRGTVRYASVHSHLGRNGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGYQVCRKKMGTPPENLCCFCPKPFKEFVEHVVTLKYDEEPNYAKYISLFDGIVGPNPDIRPLNTEGAQKLVGHKRGRLASEDDDEQPKKKVRVGLPANQWISVYNARRPMKQRYHYNVSSTRLSQHIDKGNEDGLYISSVASSQGLWALIMDAGTGFTSQVYEFSPQFFHKEWIMEQWEKNYYITAVAGIANGSSLVVMSKGTQYVQQSYKVSDSFPFKWISKKWREKFFVTSMATAGPKWGVVMSKGTGFSKQAVELDFLYPSEGIHKRWESGYRITSTAATWDQAAFVLSIPENKLQDETQETLRTTTFPSTHVKEKWAKNLYIASICYGRTVS*