AlfalfaGEDB | MsaG041504

M. sativa ssp. caerulea / MsaG041504

KEGG: K15128
GO: GO:0000428 GO:0001128 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070847 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
PFAM: PF04934.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041504	XP_013444227.1	99.194	248	2	0	1	248	1	248	0.0	508

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041504	sp\|F4IXJ7\|MED6_ARATH	57.971	276	74	3	14	248	24	298	2.73e-94	281

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041504	tr\|A0A072TL70\|A0A072TL70_MEDTR	99.194	248	2	0	1	248	1	248	0.0	508

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TFs/TRs:

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Gene ID	Type	Classification
MsaG041504	TR	MED6

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG041504	0.831324	3.210742e-55	9.652027e-53
MsaG000113	MsaG041504	0.821378	7.326541e-53	1.671203e-50
MsaG000151	MsaG041504	0.812536	6.938204e-51	1.260927e-48
MsaG000153	MsaG041504	0.834273	5.995055e-56	1.964869e-53
MsaG000188	MsaG041504	0.815126	1.876316e-51	3.638479e-49
MsaG000213	MsaG041504	0.813448	4.388597e-51	8.159350e-49
MsaG000247	MsaG041504	0.821753	6.007084e-53	1.383940e-50
MsaG000400	MsaG041504	0.816089	1.147918e-51	2.281086e-49
MsaG000403	MsaG041504	0.814423	2.682008e-51	5.109832e-49
MsaG000455	MsaG041504	0.834867	4.258131e-56	1.420655e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041504	MtrunA17_Chr8g0341301	99.194	248	2	0	1	248	1	248	0.0	508
MsaG041504	MtrunA17_Chr8g0356941	100.000	116	0	0	65	180	1	116	9.80e-81	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041504	AT3G21350.1	68.085	235	74	1	14	248	24	257	8.97e-104	301
MsaG041504	AT3G21350.2	57.971	276	74	3	14	248	24	298	2.78e-95	281

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Find 64 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATAATAAGCAAGCAT+TGG	0.508033	8:+7809234	None:intergenic
AAGACGAGGTTACGATCAAG+TGG	0.618461	8:+7809537	None:intergenic
AAGCGAAGTAATCGAAGACG+AGG	0.677731	8:+7809523	None:intergenic
AAGTTGGAGAAGATAGGATA+TGG	0.422814	8:-7808484	MsaT041504.1:intron
AATGCTTGCTTATTATATTT+TGG	0.131733	8:-7809232	MsaT041504.1:CDS
AATGGCGGCGGAGGCGGAGC+AGG	0.410280	8:+7805301	None:intergenic
AATTACGTACGTGAGTTGAG+AGG	0.648037	8:+7809431	None:intergenic
ACATACCCTTCTGGAAATGG+CGG	0.656583	8:+7805286	None:intergenic
AGACGAGGTTACGATCAAGT+GGG	0.705573	8:+7809538	None:intergenic
AGCATTGGAGTAACTTTATC+AGG	0.301759	8:+7809249	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	7805168	7809670	7805168	ID=MsaG041504
Chr8	mRNA	7805168	7809670	7805168	ID=MsaT041504.1;Parent=MsaG041504
Chr8	exon	7805168	7805329	7805168	ID=MsaT041504.1.exon5;Parent=MsaT041504.1
Chr8	CDS	7805168	7805329	7805168	ID=cds.MsaT041504.1;Parent=MsaT041504.1
Chr8	exon	7807073	7807182	7807073	ID=MsaT041504.1.exon4;Parent=MsaT041504.1
Chr8	CDS	7807073	7807182	7807073	ID=cds.MsaT041504.1;Parent=MsaT041504.1
Chr8	exon	7808485	7808554	7808485	ID=MsaT041504.1.exon3;Parent=MsaT041504.1
Chr8	CDS	7808485	7808554	7808485	ID=cds.MsaT041504.1;Parent=MsaT041504.1
Chr8	exon	7809179	7809353	7809179	ID=MsaT041504.1.exon2;Parent=MsaT041504.1
Chr8	CDS	7809179	7809353	7809179	ID=cds.MsaT041504.1;Parent=MsaT041504.1
Chr8	exon	7809441	7809670	7809441	ID=MsaT041504.1.exon1;Parent=MsaT041504.1
Chr8	CDS	7809441	7809670	7809441	ID=cds.MsaT041504.1;Parent=MsaT041504.1

Gene Sequence

>MsaT041504.1

ATGGCGACACCAGGAATGGGAATATTAGACGGCGGAGTACCGACGGCGCAACCACCAGGAACAGACATGACCGGAATTTGCTTCAGAGATCAATTATGGCTAAACACATACCCACTTGATCGTAACCTCGTCTTCGATTACTTCGCTTTATCACCTTTCTACGATTGGACTTCTAACAACGAACAACTCCGAATGCGTTCTCATCATCCACTTGATTCCTCTCAACTCACGAAAATGATTGGTATTGAATATGTGTTGAGTGAAGTTATGGAACCTCATCTTTTTATCATGAAGAAGCAAAAGAGGGATAGTCCTGATAAAGTTACTCCAATGCTTGCTTATTATATTTTGGATGGTTCAATTTATCAAGCTCCTCAATTATCCAATGTTTTTGCTGCTAGAATTGGAAGGGCACTATATTATATTGAAAAGGCATTTACTACGGCTGCATCTAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAACGAGACTACAATTCCGGAACCAAAGGCGGCTAAGGAGACAATTGACTTAAAAGAAATTAAGCGAGTGGATCATATTCTTGCTTCTTTGCAACGCAAGCTTCCACCTGCTCCGCCTCCGCCGCCATTTCCAGAAGGGTATGTTCCACCTTCAACAGCAGAAACTGAGAAAGGCCCTGAAACTCAGGAAGCAGCTGAGTCACTAGCACCTACTGTTGATCCCATACTTGACCAAGGACCTGCAAAGAGAATGAAATTTTGA

Protein sequence

>MsaT041504.1

MATPGMGILDGGVPTAQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTSNNEQLRMRSHHPLDSSQLTKMIGIEYVLSEVMEPHLFIMKKQKRDSPDKVTPMLAYYILDGSIYQAPQLSNVFAARIGRALYYIEKAFTTAASKLEKIGYVDSENETTIPEPKAAKETIDLKEIKRVDHILASLQRKLPPAPPPPPFPEGYVPPSTAETEKGPETQEAAESLAPTVDPILDQGPAKRMKF*