AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG041596


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041596 MtrunA17_Chr8g0342421 99.015 203 0 1 1 201 1 203 5.68e-149 432
MsaG041596 MtrunA17_Chr8g0342421 86.634 202 22 2 202 398 316 517 2.33e-89 279
MsaG041596 MtrunA17_Chr2g0330171 82.199 191 23 4 18 201 1 187 2.26e-108 326
MsaG041596 MtrunA17_Chr2g0330171 45.238 210 67 12 207 398 288 467 3.55e-32 126
MsaG041596 MtrunA17_Chr8g0373541 75.135 185 33 1 17 201 3 174 1.29e-101 311
MsaG041596 MtrunA17_Chr1g0199101 88.194 144 17 0 58 201 45 188 5.03e-97 300
MsaG041596 MtrunA17_Chr4g0029521 79.310 174 34 2 29 201 8 180 9.11e-97 297
MsaG041596 MtrunA17_Chr7g0263941 85.906 149 19 1 55 201 27 175 2.22e-96 293
MsaG041596 MtrunA17_Chr1g0191991 87.500 144 18 0 58 201 61 204 2.29e-96 298
MsaG041596 MtrunA17_Chr1g0181381 87.838 148 16 2 55 201 34 180 5.63e-96 296
MsaG041596 MtrunA17_Chr4g0040571 85.811 148 19 1 54 201 35 180 6.20e-96 295
MsaG041596 MtrunA17_Chr1g0151351 71.782 202 37 3 1 201 1 183 4.57e-95 291
MsaG041596 MtrunA17_Chr1g0185121 72.973 185 41 2 18 201 6 182 6.10e-95 291
MsaG041596 MtrunA17_Chr1g0163001 85.034 147 22 0 55 201 38 184 1.01e-94 293
MsaG041596 MtrunA17_Chr1g0210821 87.770 139 17 0 63 201 47 185 1.82e-93 291
MsaG041596 MtrunA17_Chr1g0162971 85.211 142 21 0 60 201 41 182 3.00e-93 287
MsaG041596 MtrunA17_Chr2g0326381 86.111 144 19 1 59 201 31 174 5.86e-92 282
MsaG041596 MtrunA17_Chr2g0324991 87.879 132 16 0 71 202 3 134 2.17e-87 261
MsaG041596 MtrunA17_Chr7g0268961 85.606 132 19 0 70 201 32 163 2.82e-87 273
MsaG041596 MtrunA17_Chr3g0141431 79.333 150 28 2 53 201 17 164 1.60e-86 268
MsaG041596 MtrunA17_Chr6g0479921 66.207 145 48 1 60 203 29 173 5.86e-71 230
MsaG041596 MtrunA17_Chr8g0375521 53.403 191 82 3 60 248 27 212 4.11e-69 224
MsaG041596 MtrunA17_Chr2g0320341 34.694 147 82 3 69 201 224 370 1.46e-22 98.6
MsaG041596 MtrunA17_Chr3g0123941 36.429 140 81 3 70 201 118 257 1.09e-21 95.1
MsaG041596 MtrunA17_Chr1g0200421 33.974 156 86 5 59 201 224 375 2.94e-21 95.5
MsaG041596 MtrunA17_Chr8g0382121 35.000 140 80 5 73 201 109 248 3.23e-19 87.8
MsaG041596 MtrunA17_Chr5g0422571 37.500 128 68 5 83 200 108 233 4.38e-19 87.0
MsaG041596 MtrunA17_Chr8g0352011 37.008 127 69 5 83 200 173 297 2.02e-18 85.9
MsaG041596 MtrunA17_Chr7g0258011 34.646 127 72 4 83 200 183 307 7.16e-18 84.3
MsaG041596 MtrunA17_Chr4g0053341 33.103 145 87 4 64 200 63 205 9.11e-18 82.0
MsaG041596 MtrunA17_Chr1g0198651 35.385 130 70 5 83 200 109 236 1.52e-17 82.4
MsaG041596 MtrunA17_Chr1g0173841 33.858 127 73 4 83 200 222 346 4.73e-17 82.0
MsaG041596 MtrunA17_Chr2g0328921 35.433 127 71 5 83 200 145 269 6.59e-17 80.9
MsaG041596 MtrunA17_Chr4g0026521 34.921 126 73 4 83 200 125 249 6.59e-17 80.5
MsaG041596 MtrunA17_Chr2g0321291 35.714 126 72 4 83 200 140 264 1.56e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041596 AT1G55110.3 78.421 190 38 3 14 201 17 205 1.47e-105 319
MsaG041596 AT1G55110.1 78.421 190 38 3 14 201 17 205 1.47e-105 319
MsaG041596 AT1G55110.2 78.421 190 38 3 14 201 17 205 1.47e-105 319
MsaG041596 AT3G13810.4 78.061 196 34 3 15 201 17 212 4.04e-104 317
MsaG041596 AT3G13810.4 35.052 194 77 8 216 398 358 513 2.09e-16 81.3
MsaG041596 AT3G13810.1 78.061 196 34 3 15 201 17 212 4.04e-104 317
MsaG041596 AT3G13810.1 35.052 194 77 8 216 398 358 513 2.09e-16 81.3
MsaG041596 AT3G13810.5 78.061 196 34 3 15 201 12 207 4.78e-104 317
MsaG041596 AT3G13810.5 35.052 194 77 8 216 398 353 508 2.05e-16 81.3
MsaG041596 AT3G13810.6 78.238 193 33 3 18 201 1 193 2.66e-102 312
MsaG041596 AT3G13810.6 35.052 194 77 8 216 398 339 494 1.79e-16 81.6
MsaG041596 AT5G66730.1 73.118 186 33 2 17 201 4 173 3.82e-96 296
MsaG041596 AT1G03840.1 70.312 192 50 2 52 243 35 219 5.98e-96 296
MsaG041596 AT3G50700.1 70.745 188 36 2 17 201 4 175 9.86e-96 294
MsaG041596 AT1G14580.1 70.718 181 49 1 21 201 18 194 4.53e-95 293
MsaG041596 AT1G14580.2 70.718 181 49 1 21 201 18 194 4.53e-95 293
MsaG041596 AT1G14580.3 70.718 181 49 1 21 201 32 208 8.59e-95 292
MsaG041596 AT2G02080.1 83.333 144 24 0 58 201 52 195 2.15e-94 292
MsaG041596 AT2G02080.4 83.333 144 24 0 58 201 52 195 2.15e-94 292
MsaG041596 AT2G02080.5 83.333 144 24 0 58 201 52 195 2.15e-94 292
MsaG041596 AT2G02080.3 83.333 144 24 0 58 201 52 195 2.15e-94 292
MsaG041596 AT5G44160.1 75.723 173 40 1 29 201 8 178 1.09e-93 289
MsaG041596 AT4G02670.2 51.582 316 87 9 27 281 19 329 5.69e-93 285
MsaG041596 AT4G02670.1 51.582 316 87 9 27 281 17 327 7.16e-93 285
MsaG041596 AT3G45260.2 86.713 143 18 1 60 201 39 181 8.33e-93 286
MsaG041596 AT3G45260.1 86.713 143 18 1 60 201 39 181 8.33e-93 286
MsaG041596 AT1G03840.2 69.271 192 50 3 52 243 35 217 4.96e-92 286
MsaG041596 AT5G60470.3 76.074 163 35 2 40 201 23 182 4.14e-90 280
MsaG041596 AT5G60470.2 76.074 163 35 2 40 201 27 186 4.44e-90 280
MsaG041596 AT3G13810.2 70.792 202 44 3 15 201 12 213 5.38e-90 281
MsaG041596 AT3G13810.2 35.052 194 77 8 216 398 359 514 1.93e-16 81.3
MsaG041596 AT5G03150.1 85.315 143 20 1 60 201 53 195 5.75e-90 280
MsaG041596 AT2G02070.2 83.099 142 24 0 60 201 52 193 1.68e-89 282
MsaG041596 AT2G02070.1 83.099 142 24 0 60 201 52 193 1.68e-89 282
MsaG041596 AT3G13810.3 70.854 199 43 3 18 201 1 199 3.10e-88 276
MsaG041596 AT3G13810.3 35.052 194 77 8 216 398 345 500 1.97e-16 81.3
MsaG041596 AT5G44160.2 85.606 132 19 0 70 201 8 139 1.51e-84 264
MsaG041596 AT5G60470.1 74.342 152 37 2 52 201 26 177 1.12e-81 258
MsaG041596 AT2G02080.6 85.593 118 17 0 84 201 1 118 1.75e-78 249
MsaG041596 AT2G02080.2 85.593 118 17 0 84 201 1 118 1.75e-78 249
MsaG041596 AT1G25250.3 65.986 147 47 2 60 203 33 179 1.01e-70 227
MsaG041596 AT1G68130.1 65.753 146 48 2 60 203 41 186 3.24e-70 227
MsaG041596 AT2G01940.1 64.667 150 51 2 56 203 40 189 1.32e-69 226
MsaG041596 AT2G01940.3 65.333 150 49 3 56 203 40 188 1.46e-68 223
MsaG041596 AT1G25250.1 62.745 153 52 3 56 203 4 156 7.38e-68 219
MsaG041596 AT1G68130.2 67.000 100 31 2 106 203 1 100 1.44e-43 155
MsaG041596 AT1G25250.2 66.337 101 31 2 106 203 1 101 2.58e-43 153
MsaG041596 AT2G01940.2 65.000 100 33 2 106 203 1 100 5.02e-42 151
MsaG041596 AT1G34370.3 32.022 178 98 4 69 223 14 191 1.60e-22 97.1
MsaG041596 AT1G34370.2 32.022 178 98 4 69 223 224 401 2.39e-22 99.0
MsaG041596 AT1G34370.1 32.022 178 98 4 69 223 224 401 2.39e-22 99.0
MsaG041596 AT5G22890.1 34.194 155 86 5 61 201 191 343 1.15e-20 93.2
MsaG041596 AT1G08290.1 33.750 160 87 6 59 200 141 299 2.02e-17 83.2
MsaG041596 AT1G13290.1 34.375 128 73 4 83 200 95 221 2.52e-17 82.4
MsaG041596 AT1G51220.1 33.333 126 75 3 83 200 172 296 4.76e-17 82.0
MsaG041596 AT3G20880.1 34.127 126 74 3 83 200 250 374 5.93e-17 82.4
MsaG041596 AT3G57670.1 33.858 127 73 4 83 200 211 335 6.24e-17 82.0
MsaG041596 AT1G34790.1 33.824 136 81 3 73 200 129 263 5.57e-16 78.6

Find 79 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAAACATTTCATCAAAT+TGG 0.116876 8:+8974184 None:intergenic
TTCTCTAGTGCCACATGTTT+TGG 0.232714 8:+8975597 None:intergenic
TGTAATCATAAGATGGTAAA+AGG 0.239938 8:-8976251 None:intergenic
TCTGGTAACAGAACTGAAAT+TGG 0.252456 8:-8976146 MsaT041596.1:CDS
GACGGTGGCGGCGGCGGCGG+CGG 0.256319 8:-8974093 MsaT041596.1:CDS
CCTAGTCTTGTTCATGTTCC+TGG 0.271217 8:-8974522 MsaT041596.1:intron
GCCGCCGCCGCCACCGTCAT+TGG 0.303592 8:+8974098 None:intergenic
CATGATCCATCAAGAGCATT+AGG 0.324615 8:-8975730 MsaT041596.1:CDS
AGGTTTGACAAGAGATTTCT+TGG 0.358914 8:-8974058 MsaT041596.1:CDS
AATGACGGTGGCGGCGGCGG+CGG 0.359203 8:-8974096 MsaT041596.1:CDS
CAAGAGATTTCTTGGGGCTT+AGG 0.363505 8:-8974050 MsaT041596.1:CDS
ACCAAACATTTCATCAAATT+GGG 0.370739 8:+8974185 None:intergenic
ATGATCCATCAAGAGCATTA+GGG 0.372273 8:-8975729 MsaT041596.1:CDS
AATAATGTCTCTGGTAACTT+TGG 0.395509 8:-8974345 MsaT041596.1:CDS
CTTCCACTACTTGTTGCTGT+TGG 0.402652 8:+8976216 None:intergenic
GGTGAAGCTAGTGTTTCTTC+TGG 0.407702 8:-8976164 MsaT041596.1:CDS
AAATCCCCTAATGCTCTTGA+TGG 0.408372 8:+8975724 None:intergenic
GTTGCAGAAAGCAGCTCAAA+TGG 0.410516 8:-8974442 MsaT041596.1:CDS
TGATGCACACAAGTTGGTTC+TGG 0.417382 8:+8975751 None:intergenic
AGTGACATTCTAAGTATTGC+AGG 0.426084 8:-8974015 MsaT041596.1:CDS
AATATGCTGTTCAATCTGAT+TGG 0.427517 8:-8975630 MsaT041596.1:CDS
ACCAATGACGGTGGCGGCGG+CGG 0.436786 8:-8974099 MsaT041596.1:CDS
ATTCTAAGTATTGCAGGGAT+TGG 0.439295 8:-8974009 MsaT041596.1:CDS
ACCCAATTTGATGAAATGTT+TGG 0.443043 8:-8974186 MsaT041596.1:CDS
ATTTGTGAGATCTGCAACAA+AGG 0.447156 8:-8975880 MsaT041596.1:CDS
GTTCTTTGCTTCAACTTCCA+TGG 0.449598 8:+8975808 None:intergenic
GAAAACAAACCTGGGTTACC+AGG 0.450492 8:+8976044 None:intergenic
ATAGCTATAACCTCAGCATC+CGG 0.451144 8:+8975937 None:intergenic
TCAAACTTAACTTCTGCATC+TGG 0.461869 8:-8976185 MsaT041596.1:CDS
GATTCTCTCAATAATGTCTC+TGG 0.462323 8:-8974354 MsaT041596.1:CDS
GAAGTAGTTGCAGTAGTTGT+TGG 0.470353 8:+8974273 None:intergenic
AAAGCCATCATGGCAAGGTT+AGG 0.473421 8:-8973947 None:intergenic
TGGGTCTTAATATTCATAGT+TGG 0.475879 8:+8974384 None:intergenic
GGTGCAACAATGAATAGAAC+TGG 0.479773 8:-8974420 MsaT041596.1:CDS
TCAAGTTCAACAACAATACT+TGG 0.481347 8:-8976105 MsaT041596.1:CDS
GAAGGTACTGTTTGGTAAGA+AGG 0.483393 8:+8974489 None:intergenic
ATCAATCTCAAAAGCCATCA+TGG 0.486220 8:-8973957 MsaT041596.1:CDS
GGTTTGACAAGAGATTTCTT+GGG 0.503476 8:-8974057 MsaT041596.1:CDS
ACCACCAATGACGGTGGCGG+CGG 0.504903 8:-8974102 MsaT041596.1:CDS
TGGACCTAACCTTGCCATGA+TGG 0.507628 8:+8973943 None:intergenic
AGTATTGTTGTTGAACTTGA+GGG 0.512238 8:+8976108 None:intergenic
GAAAACATGGTGAGAAGAAG+TGG 0.515681 8:-8975675 MsaT041596.1:CDS
CATTATTGAGAGAATCAACT+TGG 0.518652 8:+8974361 None:intergenic
GGCGGCGGTGGTGGAAATGA+AGG 0.520549 8:-8974078 MsaT041596.1:CDS
ATTTAGTTACCTTGAGAAGA+GGG 0.520888 8:+8975555 None:intergenic
CAATTTGATGAAATGTTTGG+TGG 0.530509 8:-8974183 MsaT041596.1:CDS
GCCGCCGCCACCGTCATTGG+TGG 0.534618 8:+8974101 None:intergenic
AAGTATTGTTGTTGAACTTG+AGG 0.537745 8:+8976107 None:intergenic
TTGCAGAAAGCAGCTCAAAT+GGG 0.549522 8:-8974441 MsaT041596.1:CDS
TAAGAAGGGAGTGTGGGTCC+AGG 0.557369 8:+8974504 None:intergenic
AGAGCATTAGGGGATTTGAC+TGG 0.562614 8:-8975718 MsaT041596.1:CDS
ATTGAGAGAATCAACTTGGT+GGG 0.565155 8:+8974365 None:intergenic
AAGGTACTGTTTGGTAAGAA+GGG 0.566686 8:+8974490 None:intergenic
TAGCTATAACCTCAGCATCC+GGG 0.572921 8:+8975938 None:intergenic
GTTCCAACAGCAACAAGTAG+TGG 0.573848 8:-8976219 MsaT041596.1:CDS
AATCTTCAACTTCACAGAAG+AGG 0.577210 8:-8975841 MsaT041596.1:CDS
AATTTAGTTACCTTGAGAAG+AGG 0.584975 8:+8975554 None:intergenic
TATTGAGAGAATCAACTTGG+TGG 0.585481 8:+8974364 None:intergenic
ACAACCACCAATGACGGTGG+CGG 0.585647 8:-8974105 MsaT041596.1:CDS
TGTGAGCTGAAGGTACTGTT+TGG 0.586948 8:+8974481 None:intergenic
AGAAACCTCCCTGGTAACCC+AGG 0.588025 8:-8976053 MsaT041596.1:intron
TCTAAAACAACCACCAATGA+CGG 0.588296 8:-8974111 MsaT041596.1:CDS
GTGACATTCTAAGTATTGCA+GGG 0.598839 8:-8974014 MsaT041596.1:CDS
GTTTGACAAGAGATTTCTTG+GGG 0.605661 8:-8974056 MsaT041596.1:CDS
TGATCCATCAAGAGCATTAG+GGG 0.622634 8:-8975728 MsaT041596.1:CDS
TCTCAAAAGCCATCATGGCA+AGG 0.624497 8:-8973952 MsaT041596.1:CDS
TGGGTTGCTTCAAATCCAGA+AGG 0.625506 8:+8974204 None:intergenic
GTTTGGTAAGAAGGGAGTGT+GGG 0.626393 8:+8974498 None:intergenic
TGTTTGGTAAGAAGGGAGTG+TGG 0.632667 8:+8974497 None:intergenic
ACTGTGGAACCCTCTTCTCA+AGG 0.634375 8:-8975564 MsaT041596.1:intron
AGAATGTCACTATGTGACAA+TGG 0.635720 8:+8974027 None:intergenic
GAAGAGGTCATAATTTACCA+TGG 0.635939 8:-8975825 MsaT041596.1:CDS
GGATCATGATGCACACAAGT+TGG 0.642093 8:+8975745 None:intergenic
AAAACAAACCTGGGTTACCA+GGG 0.660704 8:+8976045 None:intergenic
ACAAACCTGGGTTACCAGGG+AGG 0.662065 8:+8976048 None:intergenic
AAAACAACCACCAATGACGG+TGG 0.670222 8:-8974108 MsaT041596.1:CDS
GTAGCTGACATGTGAGCTGA+AGG 0.671459 8:+8974471 None:intergenic
AAAGCTCATTCCAAAACATG+TGG 0.678165 8:-8975607 MsaT041596.1:CDS
AGAGAATATAGATGTGACTG+TGG 0.703138 8:-8975580 MsaT041596.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 8973948 8976261 8973948 ID=MsaG041596
Chr8 mRNA 8973948 8976261 8973948 ID=MsaT041596.1;Parent=MsaG041596
Chr8 exon 8973948 8974539 8973948 ID=MsaT041596.1.exon3;Parent=MsaT041596.1
Chr8 CDS 8973948 8974539 8973948 ID=cds.MsaT041596.1;Parent=MsaT041596.1
Chr8 exon 8975565 8975961 8975565 ID=MsaT041596.1.exon2;Parent=MsaT041596.1
Chr8 CDS 8975565 8975961 8975565 ID=cds.MsaT041596.1;Parent=MsaT041596.1
Chr8 exon 8976054 8976261 8976054 ID=MsaT041596.1.exon1;Parent=MsaT041596.1
Chr8 CDS 8976054 8976261 8976054 ID=cds.MsaT041596.1;Parent=MsaT041596.1
Gene Sequence

>MsaT041596.1

ATGGTAAAAGGTTTGATGATGTTCCAACAGCAACAAGTAGTGGAAGAAAACATGTCAAACTTAACTTCTGCATCTGGTGAAGCTAGTGTTTCTTCTGGTAACAGAACTGAAATTGGTACTAGTAGTAGTTACCCTCAAGTTCAACAACAATACTTGGTTCCTCCAACTCAACCAATGAAAAAAAAGAGAAACCTCCCTGGTAACCCAGACCCGGATGCTGAGGTTATAGCTATGTCACCAAAGAGTTTACTAGCAAAAAACAGGTTCATTTGTGAGATCTGCAACAAAGGCTTTCAAAGAGATCAAAATCTTCAACTTCACAGAAGAGGTCATAATTTACCATGGAAGTTGAAGCAAAGAACAAGCAAAGAGATTAGAAAGAAAGTTTATGTATGTCCAGAACCAACTTGTGTGCATCATGATCCATCAAGAGCATTAGGGGATTTGACTGGAATCAAGAAGCACTTTTCCAGAAAACATGGTGAGAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAACATGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTCTTCTCAAGTCTTGTTCATGTTCCTGGACCCACACTCCCTTCTTACCAAACAGTACCTTCAGCTCACATGTCAGCTACTGCATTGTTGCAGAAAGCAGCTCAAATGGGTGCAACAATGAATAGAACTGGTTCTGCTTCTTCACCAACTATGAATATTAAGACCCACCAAGTTGATTCTCTCAATAATGTCTCTGGTAACTTTGGTTTGAATTTGTTGTCATCATCACAAGAACAACAACATCAACAAAACACACCAACAACTACTGCAACTACTTCTTCATATCTTAGTAATATTCATGATGTTATGTTTTCTTCTTCATCTCCTTCTGGATTTGAAGCAACCCAATTTGATGAAATGTTTGGTGGCATTATGAATTCAAAGAAAGATCAAAACTTGCATGATGAGAAAGTAATCTCTAAAACAACCACCAATGACGGTGGCGGCGGCGGCGGCGGTGGTGGAAATGAAGGTTTGACAAGAGATTTCTTGGGGCTTAGGCCATTGTCACATAGTGACATTCTAAGTATTGCAGGGATTGGAAACTGCATGAATGATCAACAACAACAAAATCAATCTCAAAAGCCATCATGGCAAGGTTAG

Protein sequence

>MsaT041596.1

MVKGLMMFQQQQVVEENMSNLTSASGEASVSSGNRTEIGTSSSYPQVQQQYLVPPTQPMKKKRNLPGNPDPDAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSSLVHVPGPTLPSYQTVPSAHMSATALLQKAAQMGATMNRTGSASSPTMNIKTHQVDSLNNVSGNFGLNLLSSSQEQQHQQNTPTTTATTSSYLSNIHDVMFSSSSPSGFEATQFDEMFGGIMNSKKDQNLHDEKVISKTTTNDGGGGGGGGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDQQQQNQSQKPSWQG*