Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG041622 | XP_003627159.1 | 99.578 | 474 | 2 | 0 | 1 | 474 | 1 | 474 | 0.0 | 973 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG041622 | sp|Q9CAI5|CKL2_ARATH | 76.170 | 470 | 104 | 6 | 1 | 467 | 1 | 465 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG041622 | tr|G7LI85|G7LI85_MEDTR | 99.578 | 474 | 2 | 0 | 1 | 474 | 1 | 474 | 0.0 | 973 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG041622 | MtrunA17_Chr8g0342821 | 99.578 | 474 | 2 | 0 | 1 | 474 | 1 | 474 | 0.0 | 973 |
| MsaG041622 | MtrunA17_Chr2g0329981 | 83.438 | 477 | 74 | 5 | 1 | 474 | 1 | 475 | 0.0 | 809 |
| MsaG041622 | MtrunA17_Chr4g0071031 | 75.314 | 478 | 90 | 7 | 1 | 474 | 1 | 454 | 0.0 | 690 |
| MsaG041622 | MtrunA17_Chr2g0299661 | 68.723 | 470 | 142 | 4 | 1 | 469 | 1 | 466 | 0.0 | 653 |
| MsaG041622 | MtrunA17_Chr1g0183631 | 60.000 | 475 | 155 | 8 | 1 | 465 | 1 | 450 | 0.0 | 547 |
| MsaG041622 | MtrunA17_Chr7g0261501 | 77.538 | 325 | 64 | 3 | 1 | 318 | 1 | 323 | 0.0 | 540 |
| MsaG041622 | MtrunA17_Chr1g0166821 | 79.180 | 317 | 63 | 2 | 1 | 314 | 2 | 318 | 0.0 | 540 |
| MsaG041622 | MtrunA17_Chr1g0187571 | 79.798 | 297 | 59 | 1 | 1 | 296 | 2 | 298 | 0.0 | 519 |
| MsaG041622 | MtrunA17_Chr6g0486611 | 77.926 | 299 | 65 | 1 | 1 | 298 | 1 | 299 | 1.04e-178 | 507 |
| MsaG041622 | MtrunA17_Chr8g0390211 | 76.589 | 299 | 69 | 1 | 1 | 298 | 1 | 299 | 1.41e-174 | 496 |
| MsaG041622 | MtrunA17_Chr3g0140071 | 65.964 | 332 | 106 | 3 | 1 | 326 | 1 | 331 | 3.41e-162 | 465 |
| MsaG041622 | MtrunA17_Chr1g0167261 | 71.000 | 300 | 84 | 2 | 1 | 297 | 2 | 301 | 1.81e-161 | 460 |
| MsaG041622 | MtrunA17_Chr1g0146151 | 66.144 | 319 | 107 | 1 | 1 | 318 | 1 | 319 | 3.62e-160 | 460 |
| MsaG041622 | MtrunA17_Chr7g0214531 | 37.276 | 279 | 157 | 6 | 9 | 272 | 37 | 312 | 5.25e-57 | 199 |
| MsaG041622 | MtrunA17_Chr3g0140431 | 38.951 | 267 | 151 | 6 | 9 | 266 | 38 | 301 | 8.03e-57 | 198 |
| MsaG041622 | MtrunA17_Chr1g0146301 | 37.828 | 267 | 154 | 6 | 9 | 266 | 124 | 387 | 2.65e-56 | 198 |
| MsaG041622 | MtrunA17_Chr1g0213321 | 37.956 | 274 | 157 | 6 | 9 | 272 | 119 | 389 | 8.86e-56 | 197 |
| MsaG041622 | MtrunA17_Chr7g0253211 | 38.542 | 288 | 158 | 7 | 4 | 275 | 317 | 601 | 2.73e-55 | 198 |
| MsaG041622 | MtrunA17_Chr8g0340491 | 36.957 | 276 | 151 | 8 | 9 | 266 | 128 | 398 | 1.24e-50 | 182 |
| MsaG041622 | MtrunA17_Chr5g0405421 | 27.074 | 229 | 151 | 8 | 2 | 222 | 92 | 312 | 1.08e-13 | 73.2 |
| MsaG041622 | MtrunA17_Chr3g0107011 | 27.197 | 239 | 120 | 11 | 1 | 213 | 5 | 215 | 1.06e-11 | 66.6 |
| MsaG041622 | MtrunA17_Chr3g0123141 | 27.619 | 210 | 132 | 10 | 11 | 211 | 610 | 808 | 5.80e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG041622 | AT1G72710.1 | 76.170 | 470 | 104 | 6 | 1 | 467 | 1 | 465 | 0.0 | 709 |
| MsaG041622 | AT4G26100.1 | 69.979 | 473 | 112 | 9 | 1 | 470 | 1 | 446 | 0.0 | 652 |
| MsaG041622 | AT5G57015.1 | 69.538 | 476 | 101 | 9 | 1 | 474 | 1 | 434 | 0.0 | 644 |
| MsaG041622 | AT2G19470.1 | 69.533 | 407 | 102 | 5 | 1 | 404 | 1 | 388 | 0.0 | 573 |
| MsaG041622 | AT1G03930.1 | 60.970 | 474 | 173 | 6 | 1 | 467 | 1 | 469 | 0.0 | 542 |
| MsaG041622 | AT5G44100.1 | 82.492 | 297 | 51 | 1 | 1 | 296 | 1 | 297 | 0.0 | 539 |
| MsaG041622 | AT5G44100.2 | 82.492 | 297 | 51 | 1 | 1 | 296 | 1 | 297 | 0.0 | 539 |
| MsaG041622 | AT3G23340.1 | 64.096 | 415 | 135 | 6 | 1 | 414 | 1 | 402 | 0.0 | 531 |
| MsaG041622 | AT4G28540.1 | 73.620 | 326 | 78 | 2 | 1 | 318 | 5 | 330 | 0.0 | 520 |
| MsaG041622 | AT4G14340.1 | 63.260 | 411 | 137 | 5 | 1 | 410 | 7 | 404 | 0.0 | 519 |
| MsaG041622 | AT5G43320.1 | 56.495 | 485 | 186 | 9 | 1 | 469 | 1 | 476 | 0.0 | 517 |
| MsaG041622 | AT4G14340.2 | 78.788 | 297 | 62 | 1 | 1 | 296 | 7 | 303 | 0.0 | 511 |
| MsaG041622 | AT1G04440.1 | 69.940 | 336 | 100 | 1 | 1 | 335 | 1 | 336 | 3.31e-179 | 510 |
| MsaG041622 | AT5G43320.2 | 77.104 | 297 | 67 | 1 | 1 | 296 | 1 | 297 | 4.97e-177 | 501 |
| MsaG041622 | AT5G43320.3 | 77.104 | 297 | 67 | 1 | 1 | 296 | 1 | 297 | 4.97e-177 | 501 |
| MsaG041622 | AT4G28880.3 | 66.479 | 355 | 110 | 3 | 1 | 354 | 1 | 347 | 7.78e-176 | 499 |
| MsaG041622 | AT4G28880.2 | 66.479 | 355 | 110 | 3 | 1 | 354 | 1 | 347 | 7.78e-176 | 499 |
| MsaG041622 | AT4G28880.1 | 66.479 | 355 | 110 | 3 | 1 | 354 | 1 | 347 | 7.78e-176 | 499 |
| MsaG041622 | AT4G28880.4 | 66.479 | 355 | 110 | 3 | 1 | 354 | 1 | 347 | 7.78e-176 | 499 |
| MsaG041622 | AT3G23340.2 | 63.291 | 395 | 131 | 6 | 21 | 414 | 7 | 388 | 7.36e-175 | 498 |
| MsaG041622 | AT4G28860.2 | 69.113 | 327 | 99 | 2 | 1 | 326 | 1 | 326 | 3.19e-172 | 489 |
| MsaG041622 | AT4G28860.1 | 69.113 | 327 | 99 | 2 | 1 | 326 | 1 | 326 | 1.42e-171 | 489 |
| MsaG041622 | AT4G08800.1 | 68.525 | 305 | 63 | 3 | 1 | 304 | 1 | 273 | 3.26e-153 | 437 |
| MsaG041622 | AT2G25760.2 | 39.146 | 281 | 153 | 6 | 4 | 266 | 100 | 380 | 4.36e-61 | 211 |
| MsaG041622 | AT2G25760.1 | 38.434 | 281 | 152 | 7 | 4 | 266 | 100 | 377 | 5.71e-58 | 203 |
| MsaG041622 | AT3G03940.1 | 38.408 | 289 | 159 | 7 | 4 | 276 | 133 | 418 | 4.44e-56 | 198 |
| MsaG041622 | AT5G18190.2 | 38.062 | 289 | 160 | 7 | 4 | 276 | 123 | 408 | 5.07e-56 | 198 |
| MsaG041622 | AT5G18190.1 | 38.062 | 289 | 160 | 7 | 4 | 276 | 123 | 408 | 5.07e-56 | 198 |
| MsaG041622 | AT3G13670.1 | 36.042 | 283 | 163 | 6 | 9 | 276 | 137 | 416 | 2.30e-54 | 194 |
| MsaG041622 | AT2G17890.1 | 25.893 | 224 | 150 | 8 | 7 | 222 | 106 | 321 | 7.89e-13 | 71.2 |
| MsaG041622 | AT3G50530.1 | 25.532 | 235 | 135 | 8 | 5 | 218 | 144 | 359 | 6.96e-12 | 68.2 |
| MsaG041622 | AT5G39440.1 | 29.245 | 212 | 128 | 10 | 9 | 212 | 19 | 216 | 2.70e-11 | 66.2 |
| MsaG041622 | AT3G06030.1 | 26.941 | 219 | 134 | 7 | 8 | 212 | 67 | 273 | 6.62e-11 | 65.1 |
| MsaG041622 | AT3G29160.3 | 29.577 | 213 | 127 | 11 | 9 | 212 | 20 | 218 | 6.83e-11 | 64.3 |
| MsaG041622 | AT4G36070.1 | 25.455 | 220 | 148 | 7 | 7 | 218 | 69 | 280 | 9.50e-11 | 64.3 |
| MsaG041622 | AT4G36070.2 | 25.455 | 220 | 148 | 7 | 7 | 218 | 69 | 280 | 9.61e-11 | 64.3 |
Find 114 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATCAAACATAAATAATT+TGG | 0.143188 | 8:+9375609 | MsaT041622.1:CDS |
| GACAATTTCCTCATGGGTTT+AGG | 0.228856 | 8:+9372734 | MsaT041622.1:CDS |
| ATTTATTCAATTTCTGTAAT+AGG | 0.238085 | 8:+9372531 | MsaT041622.1:CDS |
| TTCTTCATTTGTCTGAATAT+TGG | 0.261094 | 8:-9371568 | None:intergenic |
| GGAAAAGATGGTAGGAATAT+TGG | 0.271839 | 8:+9375081 | MsaT041622.1:CDS |
| AAAATTGGTAGCGGATCTTT+TGG | 0.312915 | 8:+9371442 | MsaT041622.1:CDS |
| CTCACGCTGGATTCAAGTTT+AGG | 0.327718 | 8:+9375505 | MsaT041622.1:CDS |
| CTTGCTGCTGGACCGAGTTC+TGG | 0.338183 | 8:+9374834 | MsaT041622.1:CDS |
| ACAATTTCCTCATGGGTTTA+GGG | 0.340991 | 8:+9372735 | MsaT041622.1:CDS |
| GAAAAGATGGTAGGAATATT+GGG | 0.370564 | 8:+9375082 | MsaT041622.1:CDS |
| ATGAATACTCATCTTGGAAT+TGG | 0.372690 | 8:+9373907 | MsaT041622.1:CDS |
| ACCTCAGTGACCGACAATAA+TGG | 0.388781 | 8:-9374384 | None:intergenic |
| TTTCTGCAGTCTACCTTGGC+AGG | 0.394985 | 8:+9374152 | MsaT041622.1:intron |
| TATCGAGTTCGAATTTCTTT+CGG | 0.396736 | 8:+9375398 | MsaT041622.1:CDS |
| CACTTACAGGGTCTTGCTGC+TGG | 0.397023 | 8:+9374822 | MsaT041622.1:intron |
| CTTCATACTTCCATTATTGT+CGG | 0.399001 | 8:+9374374 | MsaT041622.1:CDS |
| AATCGAAGACATAATCAAAC+TGG | 0.405895 | 8:-9374657 | None:intergenic |
| CCAAACCTTCACGGATGAAT+AGG | 0.413827 | 8:-9374453 | None:intergenic |
| GGTTTAATGGAACCTCGAAT+TGG | 0.417126 | 8:+9371397 | None:intergenic |
| ATGCCATAAAAGTACCTATA+GGG | 0.418213 | 8:-9372931 | None:intergenic |
| AATTTGGATTCAACGCTTAG+AGG | 0.429713 | 8:+9375625 | MsaT041622.1:CDS |
| GCTAGTATGAATACTCATCT+TGG | 0.435171 | 8:+9373901 | MsaT041622.1:CDS |
| AAGATTCCATCATTAGCAAT+AGG | 0.437123 | 8:-9375144 | None:intergenic |
| TTGGAAATAAGTTCCGTCTT+GGG | 0.443286 | 8:+9371416 | MsaT041622.1:CDS |
| ACACCGGACCATTTCACATT+CGG | 0.447768 | 8:-9372455 | None:intergenic |
| CACCATAGCATCTTTAGATC+CGG | 0.452993 | 8:-9375202 | None:intergenic |
| ATACAACAATTGAGGGTGCT+TGG | 0.454552 | 8:-9372279 | None:intergenic |
| TCTTATGCTTGCCGATCAAA+TGG | 0.457248 | 8:+9372574 | MsaT041622.1:CDS |
| AGTTTGATTATGTCTTCGAT+TGG | 0.461696 | 8:+9374659 | MsaT041622.1:CDS |
| TTTGCTTCATACAACAATTG+AGG | 0.464158 | 8:-9372287 | None:intergenic |
| TCTGGACCTATTGCTAATGA+TGG | 0.466720 | 8:+9375138 | MsaT041622.1:CDS |
| TTGCTTCATACAACAATTGA+GGG | 0.471529 | 8:-9372286 | None:intergenic |
| ATCCTTGTGATGGATTTACT+TGG | 0.473724 | 8:+9372494 | MsaT041622.1:CDS |
| CCACTTACAAATGACTTAAC+CGG | 0.474625 | 8:+9375183 | MsaT041622.1:CDS |
| GAAAGTTTCTACATCTATTG+AGG | 0.478508 | 8:+9374224 | MsaT041622.1:CDS |
| CTGGAATACCGAATGTGAAA+TGG | 0.479886 | 8:+9372447 | MsaT041622.1:CDS |
| GCAAATGCTGATGGACAGTC+AGG | 0.482487 | 8:+9374873 | MsaT041622.1:CDS |
| CCCACTCGAAGGAGAACCTC+TGG | 0.486536 | 8:+9375120 | MsaT041622.1:CDS |
| CCGGTTAAGTCATTTGTAAG+TGG | 0.488016 | 8:-9375183 | None:intergenic |
| ATTGGAAATAAGTTCCGTCT+TGG | 0.488327 | 8:+9371415 | MsaT041622.1:CDS |
| GAGCACAACCGAGTATCATC+TGG | 0.489104 | 8:+9375580 | MsaT041622.1:CDS |
| CGGTTAAGTCATTTGTAAGT+GGG | 0.492030 | 8:-9375182 | None:intergenic |
| CTAGCTTCTGCAAATGCTGA+TGG | 0.497772 | 8:+9374864 | MsaT041622.1:CDS |
| AGGGATGATTTAGAGTCGCT+TGG | 0.498396 | 8:+9374027 | MsaT041622.1:CDS |
| GGTATTTCTGCAGTCTACCT+TGG | 0.499822 | 8:+9374148 | MsaT041622.1:intron |
| TCGAATTTCTTTCGGTCAAG+TGG | 0.500221 | 8:+9375406 | MsaT041622.1:CDS |
| CACATCAGCATATTCCCTAT+AGG | 0.500725 | 8:+9372917 | MsaT041622.1:CDS |
| TTTACTTGGCCCTAGTCTTG+AGG | 0.502228 | 8:+9372508 | MsaT041622.1:CDS |
| CGGAACTTATTTCCAATTCG+AGG | 0.504125 | 8:-9371409 | None:intergenic |
| TGTTTCTTCCAGATGATACT+CGG | 0.516048 | 8:-9375588 | None:intergenic |
| AAGCCAGACAATTTCCTCAT+GGG | 0.517628 | 8:+9372728 | MsaT041622.1:CDS |
| TAGGTGTACATCATTGACTT+TGG | 0.518918 | 8:+9372868 | MsaT041622.1:intron |
| TTGAATAAATCCTCAAGACT+AGG | 0.522442 | 8:-9372518 | None:intergenic |
| CTCCTCTCGTCCTCTCACGC+TGG | 0.525433 | 8:+9375492 | MsaT041622.1:CDS |
| AAACCCATGAGGAAATTGTC+TGG | 0.531680 | 8:-9372731 | None:intergenic |
| GGAGCAGTCCGTAAAAGCTC+TGG | 0.533818 | 8:+9375526 | MsaT041622.1:CDS |
| AACCGGATCTAAAGATGCTA+TGG | 0.540198 | 8:+9375200 | MsaT041622.1:CDS |
| AAAGCCAGACAATTTCCTCA+TGG | 0.544831 | 8:+9372727 | MsaT041622.1:CDS |
| TGAATAAATCCTCAAGACTA+GGG | 0.545896 | 8:-9372517 | None:intergenic |
| TTCTGCAGTCTACCTTGGCA+GGG | 0.547539 | 8:+9374153 | MsaT041622.1:intron |
| AAACAAGGCCCAAACCTTCA+CGG | 0.553845 | 8:-9374462 | None:intergenic |
| CAGCGTGAGAGGACGAGAGG+AGG | 0.553851 | 8:-9375491 | None:intergenic |
| CGTGACCTATTCATCCGTGA+AGG | 0.553976 | 8:+9374448 | MsaT041622.1:CDS |
| CAGAGAGAATAAGAATCTGA+CGG | 0.555069 | 8:+9373864 | MsaT041622.1:intron |
| AGCGTGAGAGGACGAGAGGA+GGG | 0.556937 | 8:-9375490 | None:intergenic |
| GAAGTATGAAGCAAATTCTG+AGG | 0.560679 | 8:-9374362 | None:intergenic |
| TGTGTAGGTGGTGGAAAAGA+TGG | 0.562910 | 8:+9375069 | MsaT041622.1:intron |
| GTGAAATGGTCCGGTGTGGA+AGG | 0.568781 | 8:+9372461 | MsaT041622.1:CDS |
| AAACTTGAATCCAGCGTGAG+AGG | 0.575553 | 8:-9375502 | None:intergenic |
| TCCAGAGGTTCTCCTTCGAG+TGG | 0.576149 | 8:-9375121 | None:intergenic |
| AAGTTCACATATCATGTCAT+CGG | 0.576819 | 8:+9375558 | MsaT041622.1:CDS |
| AGAGTACAACATCCTTGTGA+TGG | 0.579202 | 8:+9372484 | MsaT041622.1:CDS |
| AGCAGCCGTGATGCAGCTGT+TGG | 0.579930 | 8:+9375454 | MsaT041622.1:CDS |
| ATCATTAGCAATAGGTCCAG+AGG | 0.580010 | 8:-9375136 | None:intergenic |
| AGGGAAACCCACCATTTGAT+CGG | 0.583445 | 8:-9372585 | None:intergenic |
| CCTTGGCAGGGATTGAAAGC+AGG | 0.584404 | 8:+9374165 | MsaT041622.1:CDS |
| AGAGAGAATAAGAATCTGAC+GGG | 0.585309 | 8:+9373865 | MsaT041622.1:intron |
| CTTTGCTAGTCTCTCTGCCG+TGG | 0.586144 | 8:+9374334 | MsaT041622.1:intron |
| CTTTAATAGAGCAAAGCCGT+AGG | 0.589565 | 8:+9374007 | MsaT041622.1:intron |
| TTGATCGGCAAGCATAAGAA+CGG | 0.592423 | 8:-9372570 | None:intergenic |
| ATACCGAATGTGAAATGGTC+CGG | 0.593452 | 8:+9372452 | MsaT041622.1:CDS |
| ACCATCACTTACAATACCAC+GGG | 0.602147 | 8:-9374725 | None:intergenic |
| TTTAATAGAGCAAAGCCGTA+GGG | 0.604857 | 8:+9374008 | MsaT041622.1:intron |
| CACCATCACTTACAATACCA+CGG | 0.605886 | 8:-9374726 | None:intergenic |
| GGTTAAGTCATTTGTAAGTG+GGG | 0.606360 | 8:-9375181 | None:intergenic |
| GTCTGCATTTAAACGATGAG+AGG | 0.609688 | 8:+9375656 | MsaT041622.1:CDS |
| CTTCGTCTGATCCCACTCGA+AGG | 0.610986 | 8:+9375109 | MsaT041622.1:CDS |
| AAGCTGTATAAAATACTGCA+AGG | 0.612393 | 8:+9372308 | MsaT041622.1:CDS |
| ATCGCCACTCCTCCTTCCCG+TGG | 0.613928 | 8:+9374709 | MsaT041622.1:CDS |
| CCTGCTTTCAATCCCTGCCA+AGG | 0.616580 | 8:-9374165 | None:intergenic |
| CCAGAGGTTCTCCTTCGAGT+GGG | 0.619887 | 8:-9375120 | None:intergenic |
| ATCCAGCGTGAGAGGACGAG+AGG | 0.620493 | 8:-9375494 | None:intergenic |
| TCCATTATTGTCGGTCACTG+AGG | 0.621842 | 8:+9374383 | MsaT041622.1:CDS |
| TTCGGTCAAGTGGATCTGCA+AGG | 0.626728 | 8:+9375416 | MsaT041622.1:CDS |
| TGCAGCTGTTGGCAGTGAGA+CGG | 0.627439 | 8:+9375465 | MsaT041622.1:CDS |
| ATTTCCTCATGGGTTTAGGG+AGG | 0.628140 | 8:+9372738 | MsaT041622.1:CDS |
| CTTACAATACCACGGGAAGG+AGG | 0.631667 | 8:-9374718 | None:intergenic |
| AATACCACGGGAAGGAGGAG+TGG | 0.634617 | 8:-9374713 | None:intergenic |
| TCTGCATTTAAACGATGAGA+GGG | 0.635819 | 8:+9375657 | MsaT041622.1:CDS |
| AAGTATGAAGCAAATTCTGA+GGG | 0.637275 | 8:-9374361 | None:intergenic |
| GCGACTCTAAATCATCCCTA+CGG | 0.637624 | 8:-9374023 | None:intergenic |
| TCAAGTGGATCTGCAAGGCG+AGG | 0.638769 | 8:+9375421 | MsaT041622.1:CDS |
| TCAGCATTTGCAGAAGCTAG+CGG | 0.639218 | 8:-9374861 | None:intergenic |
| TAGGTGGTGGAAAAGATGGT+AGG | 0.644820 | 8:+9375073 | MsaT041622.1:intron |
| GCTAGCGGCAGACCAGAACT+CGG | 0.647842 | 8:-9374846 | None:intergenic |
| GTTGTACTCTCCTTCCACAC+CGG | 0.649985 | 8:-9372471 | None:intergenic |
| CACTGCCAACAGCTGCATCA+CGG | 0.650486 | 8:-9375459 | None:intergenic |
| GGCCAAGTAAATCCATCACA+AGG | 0.666479 | 8:-9372496 | None:intergenic |
| TCACTTACAATACCACGGGA+AGG | 0.675431 | 8:-9374721 | None:intergenic |
| CAAATTCTGAGGGATAGCCA+CGG | 0.686783 | 8:-9374351 | None:intergenic |
| GAATGTGAAATGGTCCGGTG+TGG | 0.716403 | 8:+9372457 | MsaT041622.1:CDS |
| CACGCCTCCCTAAACCCATG+AGG | 0.721724 | 8:-9372742 | None:intergenic |
| AAGATGGTAGGAATATTGGG+TGG | 0.729848 | 8:+9375085 | MsaT041622.1:CDS |
| CTGTATAAAATACTGCAAGG+AGG | 0.737729 | 8:+9372311 | MsaT041622.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 9371403 | 9375690 | 9371403 | ID=MsaG041622 |
| Chr8 | mRNA | 9371403 | 9375690 | 9371403 | ID=MsaT041622.1;Parent=MsaG041622 |
| Chr8 | exon | 9371403 | 9371478 | 9371403 | ID=MsaT041622.1.exon1;Parent=MsaT041622.1 |
| Chr8 | CDS | 9371403 | 9371478 | 9371403 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9371565 | 9371605 | 9371565 | ID=MsaT041622.1.exon2;Parent=MsaT041622.1 |
| Chr8 | CDS | 9371565 | 9371605 | 9371565 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9372266 | 9372335 | 9372266 | ID=MsaT041622.1.exon3;Parent=MsaT041622.1 |
| Chr8 | CDS | 9372266 | 9372335 | 9372266 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9372447 | 9372595 | 9372447 | ID=MsaT041622.1.exon4;Parent=MsaT041622.1 |
| Chr8 | CDS | 9372447 | 9372595 | 9372447 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9372677 | 9372772 | 9372677 | ID=MsaT041622.1.exon5;Parent=MsaT041622.1 |
| Chr8 | CDS | 9372677 | 9372772 | 9372677 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9372871 | 9372938 | 9372871 | ID=MsaT041622.1.exon6;Parent=MsaT041622.1 |
| Chr8 | CDS | 9372871 | 9372938 | 9372871 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9373867 | 9373928 | 9373867 | ID=MsaT041622.1.exon7;Parent=MsaT041622.1 |
| Chr8 | CDS | 9373867 | 9373928 | 9373867 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9374016 | 9374079 | 9374016 | ID=MsaT041622.1.exon8;Parent=MsaT041622.1 |
| Chr8 | CDS | 9374016 | 9374079 | 9374016 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9374161 | 9374245 | 9374161 | ID=MsaT041622.1.exon9;Parent=MsaT041622.1 |
| Chr8 | CDS | 9374161 | 9374245 | 9374161 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9374343 | 9374469 | 9374343 | ID=MsaT041622.1.exon10;Parent=MsaT041622.1 |
| Chr8 | CDS | 9374343 | 9374469 | 9374343 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9374653 | 9374735 | 9374653 | ID=MsaT041622.1.exon11;Parent=MsaT041622.1 |
| Chr8 | CDS | 9374653 | 9374735 | 9374653 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9374831 | 9374894 | 9374831 | ID=MsaT041622.1.exon12;Parent=MsaT041622.1 |
| Chr8 | CDS | 9374831 | 9374894 | 9374831 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9375076 | 9375221 | 9375076 | ID=MsaT041622.1.exon13;Parent=MsaT041622.1 |
| Chr8 | CDS | 9375076 | 9375221 | 9375076 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Chr8 | exon | 9375397 | 9375690 | 9375397 | ID=MsaT041622.1.exon14;Parent=MsaT041622.1 |
| Chr8 | CDS | 9375397 | 9375690 | 9375397 | ID=cds.MsaT041622.1;Parent=MsaT041622.1 |
| Gene Sequence |
| Protein sequence |