AlfalfaGEDB | MsaG041679

M. sativa ssp. caerulea / MsaG041679

KEGG: -
GO: GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041679	XP_013444440.1	97.164	670	16	1	1	670	1	667	0.0	1339

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041679	tr\|A0A072TY48\|A0A072TY48_MEDTR	97.164	670	16	1	1	670	1	667	0.0	1339

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TFs/TRs:

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Gene ID	Type	Classification
MsaG041679	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041679	MtrunA17_Chr8g0343641	97.164	670	16	1	1	670	1	667	0.0	1339
MsaG041679	MtrunA17_Chr1g0181001	37.795	127	75	3	515	638	305	430	1.80e-17	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041679	AT1G72650.2	38.450	671	341	17	1	640	1	630	4.84e-119	369
MsaG041679	AT1G72650.1	38.889	666	339	17	1	640	1	624	1.88e-118	367
MsaG041679	AT1G17460.1	37.246	639	338	18	7	641	5	584	1.87e-96	309
MsaG041679	AT1G17460.2	36.810	652	343	20	7	641	5	604	2.06e-94	305
MsaG041679	AT1G17460.3	36.463	639	322	17	7	641	5	563	1.72e-93	301
MsaG041679	AT2G37025.2	50.000	94	46	1	546	638	288	381	4.22e-20	93.6
MsaG041679	AT2G37025.3	50.000	94	46	1	546	638	288	381	4.22e-20	93.6
MsaG041679	AT2G37025.1	50.000	94	46	1	546	638	288	381	4.22e-20	93.6
MsaG041679	AT3G53790.1	33.600	125	67	4	515	631	272	388	4.91e-11	65.9

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Find 168 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCCATCCGACTGGCAC+GGG	0.505631	8:-10495528	MsaT041679.1:CDS
AACAGATGATGAAGTAATGG+AGG	0.663256	8:-10498578	MsaT041679.1:CDS
AACTGGTTGATGGTGTGTCG+CGG	0.661368	8:-10494433	MsaT041679.1:CDS
AAGACAAACAGTGGTTGAGG+AGG	0.656203	8:-10496714	MsaT041679.1:CDS
AAGACTGGAAAATCTTAATA+TGG	0.340239	8:-10496467	MsaT041679.1:CDS
AAGCAGTATCCGGTAATGAT+TGG	0.478775	8:-10494602	MsaT041679.1:CDS
AAGTTTGTACACAACTGGAT+TGG	0.533387	8:+10500289	None:intergenic
AATAAAGTCGTTAGCAATCA+TGG	0.425285	8:-10495486	MsaT041679.1:CDS
AATATTCCCACTGCTAAGGG+TGG	0.635127	8:-10494503	MsaT041679.1:CDS
AATCTAGAGAGCAAATTCCT+AGG	0.527590	8:-10496345	MsaT041679.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	10493070	10500411	10493070	ID=MsaG041679
Chr8	mRNA	10493070	10500411	10493070	ID=MsaT041679.1;Parent=MsaG041679
Chr8	exon	10493070	10493246	10493070	ID=MsaT041679.1.exon8;Parent=MsaT041679.1
Chr8	CDS	10493070	10493246	10493070	ID=cds.MsaT041679.1;Parent=MsaT041679.1
Chr8	exon	10494094	10494150	10494094	ID=MsaT041679.1.exon7;Parent=MsaT041679.1
Chr8	CDS	10494094	10494150	10494094	ID=cds.MsaT041679.1;Parent=MsaT041679.1
Chr8	exon	10494355	10494651	10494355	ID=MsaT041679.1.exon6;Parent=MsaT041679.1
Chr8	CDS	10494355	10494651	10494355	ID=cds.MsaT041679.1;Parent=MsaT041679.1
Chr8	exon	10495413	10495550	10495413	ID=MsaT041679.1.exon5;Parent=MsaT041679.1
Chr8	CDS	10495413	10495550	10495413	ID=cds.MsaT041679.1;Parent=MsaT041679.1
Chr8	exon	10496150	10497130	10496150	ID=MsaT041679.1.exon4;Parent=MsaT041679.1
Chr8	CDS	10496150	10497130	10496150	ID=cds.MsaT041679.1;Parent=MsaT041679.1
Chr8	exon	10497989	10498047	10497989	ID=MsaT041679.1.exon3;Parent=MsaT041679.1
Chr8	CDS	10497989	10498047	10497989	ID=cds.MsaT041679.1;Parent=MsaT041679.1
Chr8	exon	10498455	10498629	10498455	ID=MsaT041679.1.exon2;Parent=MsaT041679.1
Chr8	CDS	10498455	10498629	10498455	ID=cds.MsaT041679.1;Parent=MsaT041679.1
Chr8	exon	10500283	10500411	10500283	ID=MsaT041679.1.exon1;Parent=MsaT041679.1
Chr8	CDS	10500283	10500411	10500283	ID=cds.MsaT041679.1;Parent=MsaT041679.1

Gene Sequence

>MsaT041679.1

ATGGAAACAGTTGTTGGAATTGAGGATTATGATGATGGGAAGCTTGGAGACAGTGGGATTGATAGAAGCAGTCATGCTTTGTCTTCACCGAAGCGGATTTCCAATCCAGTTGTGTACAAACTTGTTCGGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTCGAGGATTTTCTTGAATATGAAAACAGTGAAATGCGTGTTGTTGCAGACACTGGACAGAGTATGGAATGCATATCAATCGAAAGATCATCTTCTGGGAAGCTTCGATTGGAGTGCTCGGAAGGCGTTTCACAATTAGGCACTGCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGTATATTGAACAGATGCTGCAAAAGGTTAAACAGGAAGAGAAACTTCGCTTGTCATCTCGGTCACCTGTTCATTCTCATGTACAAATAGATAGCCAGTGTTCTGCTGATAAATTTCCTGTCAGAAATGAGAAGGTTCTGTCTGAAACTCCATTCCAGGAAGCACATTCTATAGCATCAAGTTTAAATTATAGTCTTAGTAATCAATCTGGGAGTATCGATCAGTGTTCCAGACCTTCCGGAGGAGTGATAGAAAGTGGTTCATCTGCCTCTGCTGTCAATTCCGCTTTGAAGCATGATTTTTCCATGACAGATGGAGAAATATGTTTGGATAAGTTGTCGATCAAAGAACTTCATGAACTGTTTAAGGTCACTTTTGGTCGGGAAACTACTGTGAAAGACAAACAGTGGTTGAGGAGGAGGATTGCTATGAGTTTAACTAACTCATGCGATGTTTCAGCGACAACATTCACTGTTAAAGATAACAAAATAACTAGAAAATTTGAAGAAGAATGTTCTAGAAATGTGAATGCTGCAGCTGTAACCTCTGCGGAAAATATGGCTGTACAAAGGGATATCAAGTATAATGATTCAAAAGCCGTGGGTGGTTGCGAAGTTGATAATAACCAAGTTGCTTCTGAAACAAGACTGGAAAATCTTAATATGGAACATGAATTAGAAGATGAGGATCAGCTGAGAGAACAAAGAGCTGCGAAAAGAATGCGTAAGCCCACTAAGCGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAGCAAATTCCTAGGTCGTCAAGTTCTAATAAAAGTACGGGACACATACAGGCTTCTCCAACATGTTATGCCGGGCCTGCTAGGAATGCTTATCCAGAGACAAGAACATTTACCACCAGGTTAGACTCTCTTGGAGGTTCTGGTTTCCAAATTCCTTGTGTTACTCGGGTGCGAAGAAGTCGTCCACGGAAAAATATCACATCTCTTATGAAATTCCATCCGACTGGCACGGGCGAGGCTGCAAAGTCAGGCAATAAAGTCGTTAGCAATCATGGTTCTGATGCTGATAGTGAAATTGAGGACAAATTCATAAAGCCAAGTTCAATGCCTGTGAAGGTTCATCAGACGTCTACTTCTGAGTCTAAGAAAGATAAGAAGCAGTATCCGGTAATGATTGGCACAACTGATCCAAGGCAGGAATTGAGGCCTAAAAAGATAGATCCCTCAAGTCATGCCACAGAGGGCAATATAGTTAATATTCCCACTGCTAAGGGTGGAATGAGGAGGAAGCATCATCGAGCATGGACCCTTGTTGAGGTATTGAAACTGGTTGATGGTGTGTCGCGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGGCTCTCCTTTTCTTCGTACTCACATCGTACCTCTGTTGATCTCAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCACCAACACCTGCTGATGAGGGGATGAATTCGCGGAAGCATGGTTCCGCCCCGATTCCTGAGCCAATTTTAGTACGTGTGAGAGAGCTAGCAGAGATAAATTCTCAAGTACCTTCAAATTCCAGTTCAAGCAAGTTAACAGCTAATGGTGCAACTAATGGTGCAAGGAGTATGCATGGAGACAGAGCAGGGTACTTGTAG

Protein sequence

>MsaT041679.1

METVVGIEDYDDGKLGDSGIDRSSHALSSPKRISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSEMRVVADTGQSMECISIERSSSGKLRLECSEGVSQLGTAEADLGKLNAKFQYIEQMLQKVKQEEKLRLSSRSPVHSHVQIDSQCSADKFPVRNEKVLSETPFQEAHSIASSLNYSLSNQSGSIDQCSRPSGGVIESGSSASAVNSALKHDFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLRRRIAMSLTNSCDVSATTFTVKDNKITRKFEEECSRNVNAAAVTSAENMAVQRDIKYNDSKAVGGCEVDNNQVASETRLENLNMEHELEDEDQLREQRAAKRMRKPTKRYIEELSENESREQIPRSSSSNKSTGHIQASPTCYAGPARNAYPETRTFTTRLDSLGGSGFQIPCVTRVRRSRPRKNITSLMKFHPTGTGEAAKSGNKVVSNHGSDADSEIEDKFIKPSSMPVKVHQTSTSESKKDKKQYPVMIGTTDPRQELRPKKIDPSSHATEGNIVNIPTAKGGMRRKHHRAWTLVEVLKLVDGVSRCGPGRWSEIKRLSFSSYSHRTSVDLKDKWRNLLKASFAPTPADEGMNSRKHGSAPIPEPILVRVRELAEINSQVPSNSSSSKLTANGATNGARSMHGDRAGYL*