AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG041691

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041691 MtrunA17_Chr8g0343841 100.000 95 0 0 154 248 1 95 1.03e-65 199
MsaG041691 MtrunA17_Chr8g0343831 98.810 84 1 0 1 84 1 84 6.41e-56 179
MsaG041691 MtrunA17_Chr8g0343831 96.667 60 2 0 84 143 148 207 5.14e-34 123
MsaG041691 MtrunA17_Chr4g0070641 42.604 169 87 3 1 165 1 163 1.71e-36 127
MsaG041691 MtrunA17_Chr4g0070611 67.045 88 25 2 1 84 1 88 9.64e-36 129
MsaG041691 MtrunA17_Chr4g0055981 66.234 77 26 0 8 84 55 131 5.37e-33 119
MsaG041691 MtrunA17_Chr3g0121241 59.740 77 31 0 8 84 42 118 2.90e-30 114
MsaG041691 MtrunA17_Chr5g0435101 62.025 79 30 0 6 84 9 87 3.63e-30 112
MsaG041691 MtrunA17_Chr8g0346561 61.039 77 30 0 8 84 12 88 9.51e-30 113
MsaG041691 MtrunA17_Chr7g0275911 55.844 77 34 0 8 84 12 88 4.63e-29 110
MsaG041691 MtrunA17_Chr3g0131121 54.545 88 36 1 1 84 1 88 1.76e-28 109
MsaG041691 MtrunA17_Chr4g0037141 54.545 88 36 1 1 84 1 88 2.08e-28 109
MsaG041691 MtrunA17_Chr1g0167691 53.409 88 37 1 1 84 1 88 3.60e-28 107
MsaG041691 MtrunA17_Chr2g0328771 62.667 75 28 0 10 84 22 96 9.21e-28 108
MsaG041691 MtrunA17_Chr1g0187761 53.409 88 37 1 1 84 1 88 9.37e-28 106
MsaG041691 MtrunA17_Chr1g0167661 53.409 88 37 1 1 84 1 88 1.08e-27 106
MsaG041691 MtrunA17_Chr1g0203411 57.143 77 33 0 8 84 12 88 1.99e-27 106
MsaG041691 MtrunA17_Chr4g0022891 54.545 88 36 1 1 84 1 88 2.20e-27 105
MsaG041691 MtrunA17_Chr8g0360111 61.039 77 30 0 8 84 25 101 2.94e-27 105
MsaG041691 MtrunA17_Chr6g0453211 59.091 88 32 2 1 84 1 88 5.60e-27 105
MsaG041691 MtrunA17_Chr8g0342531 49.425 87 44 0 6 92 10 96 1.05e-26 101
MsaG041691 MtrunA17_Chr5g0434931 61.039 77 30 0 8 84 35 111 2.02e-26 103
MsaG041691 MtrunA17_Chr7g0220341 60.759 79 29 1 8 84 25 103 2.57e-26 103
MsaG041691 MtrunA17_Chr4g0032401 61.333 75 29 0 10 84 19 93 2.94e-26 104
MsaG041691 MtrunA17_Chr1g0211161 52.874 87 41 0 6 92 11 97 3.14e-26 102
MsaG041691 MtrunA17_Chr5g0434911 62.338 77 29 0 8 84 21 97 3.20e-26 103
MsaG041691 MtrunA17_Chr7g0228991 60.000 80 32 0 5 84 26 105 3.27e-26 103
MsaG041691 MtrunA17_Chr1g0194951 57.143 77 33 0 8 84 12 88 4.21e-26 104
MsaG041691 MtrunA17_Chr1g0194301 51.765 85 41 0 8 92 33 117 4.35e-26 102
MsaG041691 MtrunA17_Chr4g0068061 57.333 75 32 0 10 84 14 88 4.87e-26 103
MsaG041691 MtrunA17_Chr2g0323411 52.273 88 38 1 1 84 1 88 5.28e-26 103
MsaG041691 MtrunA17_Chr1g0209661 51.163 86 42 0 7 92 26 111 5.35e-26 103
MsaG041691 MtrunA17_Chr2g0323321 51.724 87 39 1 1 84 1 87 5.39e-26 98.2
MsaG041691 MtrunA17_Chr3g0088461 55.128 78 35 0 7 84 21 98 6.02e-26 103
MsaG041691 MtrunA17_Chr8g0385321 51.136 88 39 1 1 84 1 88 6.91e-26 103
MsaG041691 MtrunA17_Chr7g0228231 56.410 78 34 0 7 84 13 90 8.05e-26 100
MsaG041691 MtrunA17_Chr2g0294811 54.545 77 35 0 8 84 12 88 8.38e-26 97.8
MsaG041691 MtrunA17_Chr2g0309911 53.086 81 38 0 4 84 7 87 8.47e-26 102
MsaG041691 MtrunA17_Chr5g0397231 53.165 79 37 0 6 84 10 88 8.83e-26 103
MsaG041691 MtrunA17_Chr8g0387421 54.430 79 36 0 6 84 10 88 1.02e-25 102
MsaG041691 MtrunA17_Chr6g0450101 56.410 78 34 0 7 84 13 90 1.24e-25 100
MsaG041691 MtrunA17_Chr4g0060721 57.143 77 33 0 8 84 13 89 1.33e-25 102
MsaG041691 MtrunA17_Chr1g0193371 51.724 87 42 0 6 92 10 96 1.34e-25 103
MsaG041691 MtrunA17_Chr8g0342461 52.381 84 39 1 4 86 8 91 1.42e-25 97.8
MsaG041691 MtrunA17_Chr5g0434831 58.442 77 32 0 8 84 7 83 1.68e-25 99.4
MsaG041691 MtrunA17_Chr3g0092401 55.682 88 35 1 1 84 2 89 2.01e-25 101
MsaG041691 MtrunA17_Chr7g0217221 58.442 77 32 0 8 84 12 88 2.19e-25 100
MsaG041691 MtrunA17_Chr7g0254411 57.143 77 33 0 8 84 12 88 2.55e-25 102
MsaG041691 MtrunA17_Chr7g0271241 52.874 87 41 0 6 92 10 96 2.80e-25 102
MsaG041691 MtrunA17_Chr7g0274581 54.545 77 35 0 8 84 12 88 2.87e-25 99.0
MsaG041691 MtrunA17_Chr2g0281071 57.333 75 32 0 10 84 15 89 3.86e-25 101
MsaG041691 MtrunA17_Chr7g0240821 58.904 73 30 0 12 84 5 77 4.07e-25 99.0
MsaG041691 MtrunA17_Chr8g0342471 52.381 84 39 1 4 86 8 91 4.28e-25 96.7
MsaG041691 MtrunA17_Chr5g0395221 54.545 77 35 0 8 84 12 88 4.86e-25 94.7
MsaG041691 MtrunA17_Chr3g0117091 51.724 87 42 0 6 92 10 96 5.05e-25 101
MsaG041691 MtrunA17_Chr8g0342511 52.564 78 37 0 6 83 10 87 5.14e-25 95.1
MsaG041691 MtrunA17_Chr1g0194291 51.765 85 41 0 8 92 21 105 5.30e-25 99.8
MsaG041691 MtrunA17_Chr5g0395281 51.136 88 39 1 1 84 1 88 5.88e-25 100
MsaG041691 MtrunA17_Chr2g0323351 53.409 88 37 1 1 84 1 88 7.94e-25 99.0
MsaG041691 MtrunA17_Chr4g0022901 50.562 89 39 1 1 84 1 89 8.61e-25 99.4
MsaG041691 MtrunA17_Chr4g0022931 50.562 89 39 1 1 84 1 89 8.70e-25 99.4
MsaG041691 MtrunA17_Chr4g0048511 56.000 75 33 0 10 84 15 89 8.97e-25 100
MsaG041691 MtrunA17_Chr6g0470971 53.012 83 39 0 10 92 16 98 9.88e-25 99.4
MsaG041691 MtrunA17_Chr1g0193801 51.899 79 38 0 6 84 10 88 1.03e-24 100
MsaG041691 MtrunA17_Chr8g0342541 53.165 79 37 0 6 84 10 88 1.18e-24 100
MsaG041691 MtrunA17_Chr7g0270891 49.425 87 44 0 6 92 10 96 1.20e-24 100
MsaG041691 MtrunA17_Chr4g0042611 53.409 88 37 1 1 84 1 88 1.25e-24 93.6
MsaG041691 MtrunA17_Chr4g0044421 56.579 76 33 0 9 84 13 88 1.41e-24 96.7
MsaG041691 MtrunA17_Chr4g0022911 49.438 89 40 1 1 84 1 89 1.68e-24 99.0
MsaG041691 MtrunA17_Chr7g0217741 53.409 88 37 1 1 84 1 88 3.07e-24 98.6
MsaG041691 MtrunA17_Chr4g0058631 50.575 87 43 0 6 92 10 96 3.27e-24 99.4
MsaG041691 MtrunA17_Chr1g0168661 57.333 75 32 0 10 84 23 97 3.28e-24 97.4
MsaG041691 MtrunA17_Chr6g0453471 54.545 88 36 1 1 84 1 88 3.70e-24 99.0
MsaG041691 MtrunA17_Chr1g0203441 56.000 75 33 0 10 84 15 89 4.04e-24 97.4
MsaG041691 MtrunA17_Chr5g0434841 55.844 77 34 0 8 84 20 96 4.30e-24 98.2
MsaG041691 MtrunA17_Chr5g0410961 51.579 95 41 2 1 90 1 95 4.45e-24 98.6
MsaG041691 MtrunA17_Chr7g0261281 54.545 77 35 0 8 84 12 88 5.09e-24 97.4
MsaG041691 MtrunA17_Chr2g0330041 53.165 79 37 0 6 84 10 88 5.16e-24 99.4
MsaG041691 MtrunA17_Chr8g0342521 53.165 79 37 0 6 84 10 88 5.55e-24 98.6
MsaG041691 MtrunA17_Chr4g0022881 48.864 88 41 1 1 84 1 88 6.45e-24 95.9
MsaG041691 MtrunA17_Chr3g0103281 51.948 77 37 0 8 84 12 88 8.75e-24 97.4
MsaG041691 MtrunA17_Chr3g0099141 53.333 75 35 0 10 84 42 116 1.03e-23 93.2
MsaG041691 MtrunA17_Chr1g0186061 54.667 75 34 0 10 84 22 96 1.11e-23 95.9
MsaG041691 MtrunA17_Chr3g0115821 50.000 88 40 1 1 84 1 88 1.70e-23 97.1
MsaG041691 MtrunA17_Chr3g0099131 50.000 84 40 1 8 89 41 124 2.78e-23 98.2
MsaG041691 MtrunA17_Chr4g0039971 54.667 75 34 0 10 84 15 89 2.81e-23 96.7
MsaG041691 MtrunA17_Chr8g0342481 52.500 80 37 1 6 84 10 89 6.24e-23 96.3
MsaG041691 MtrunA17_Chr4g0042671 55.844 77 34 0 8 84 12 88 6.39e-23 96.3
MsaG041691 MtrunA17_Chr3g0080861 53.333 75 35 0 10 84 39 113 6.82e-23 97.1
MsaG041691 MtrunA17_Chr5g0425591 48.684 76 39 0 7 82 8 83 7.19e-22 86.7
MsaG041691 MtrunA17_Chr8g0349261 46.512 86 45 1 8 92 13 98 7.67e-22 91.7
MsaG041691 MtrunA17_Chr8g0354661 50.649 77 38 0 8 84 37 113 1.25e-21 93.6
MsaG041691 MtrunA17_Chr2g0311221 46.512 86 46 0 7 92 13 98 2.06e-21 91.3
MsaG041691 MtrunA17_Chr5g0417821 50.649 77 38 0 8 84 7 83 4.27e-21 89.7
MsaG041691 MtrunA17_Chr2g0327351 49.438 89 40 2 1 84 1 89 4.40e-21 90.1
MsaG041691 MtrunA17_Chr4g0057031 50.649 77 38 0 8 84 12 88 4.41e-21 89.4
MsaG041691 MtrunA17_Chr6g0487491 46.154 91 44 2 1 86 1 91 5.28e-21 89.0
MsaG041691 MtrunA17_Chr3g0135311 49.438 89 40 2 1 84 1 89 8.89e-21 89.7
MsaG041691 MtrunA17_Chr1g0151941 46.067 89 43 2 1 84 1 89 9.35e-21 88.2
MsaG041691 MtrunA17_Chr3g0110351 51.948 77 37 0 8 84 12 88 1.10e-20 89.0
MsaG041691 MtrunA17_Chr4g0068921 50.000 78 39 0 7 84 23 100 1.46e-20 86.3
MsaG041691 MtrunA17_Chr5g0434571 51.948 77 37 0 8 84 48 124 1.60e-20 89.0
MsaG041691 MtrunA17_Chr4g0028311 49.438 89 40 2 1 84 1 89 1.75e-20 88.6
MsaG041691 MtrunA17_Chr5g0440781 47.368 76 40 0 7 82 11 86 2.57e-20 85.5
MsaG041691 MtrunA17_Chr7g0228891 48.235 85 44 0 8 92 12 96 3.02e-20 87.0
MsaG041691 MtrunA17_Chr1g0154031 48.052 77 40 0 8 84 76 152 3.94e-20 88.6
MsaG041691 MtrunA17_Chr2g0322521 51.807 83 40 0 10 92 31 113 6.10e-20 87.8
MsaG041691 MtrunA17_Chr1g0152011 48.315 89 41 2 1 84 1 89 6.95e-20 87.0
MsaG041691 MtrunA17_Chr7g0269831 54.762 84 37 1 8 90 12 95 7.49e-20 87.0
MsaG041691 MtrunA17_Chr5g0440761 47.368 76 40 0 7 82 11 86 8.44e-20 85.9
MsaG041691 MtrunA17_Chr5g0441141 47.368 76 40 0 7 82 11 86 8.58e-20 85.9
MsaG041691 MtrunA17_Chr1g0192411 51.316 76 37 0 7 82 11 86 9.48e-20 87.4
MsaG041691 MtrunA17_Chr5g0400821 49.438 89 40 2 1 84 1 89 1.01e-19 86.3
MsaG041691 MtrunA17_Chr2g0293911 48.837 86 42 1 1 84 15 100 1.22e-19 86.3
MsaG041691 MtrunA17_Chr5g0441131 46.053 76 41 0 7 82 8 83 2.23e-19 82.8
MsaG041691 MtrunA17_Chr6g0452271 45.455 88 44 1 1 84 1 88 3.01e-19 85.1
MsaG041691 MtrunA17_Chr7g0264641 48.315 89 41 2 1 84 1 89 3.55e-19 84.3
MsaG041691 MtrunA17_Chr4g0072751 47.191 89 42 2 1 84 1 89 3.68e-19 85.1
MsaG041691 MtrunA17_Chr4g0054391 46.067 89 43 2 1 84 1 89 5.31e-19 84.0
MsaG041691 MtrunA17_Chr2g0327821 45.570 79 43 0 6 84 4 82 1.11e-18 82.0
MsaG041691 MtrunA17_Chr1g0180391 46.753 77 41 0 8 84 19 95 1.40e-18 81.6
MsaG041691 MtrunA17_Chr4g0030881 42.683 82 40 1 10 84 9 90 7.44e-16 74.7
MsaG041691 MtrunA17_Chr6g0453751 42.169 83 40 1 8 82 20 102 8.45e-16 72.0
MsaG041691 MtrunA17_Chr1g0193901 51.667 60 28 1 6 64 9 68 1.01e-15 71.2
MsaG041691 MtrunA17_Chr1g0193891 51.667 60 28 1 6 64 9 68 1.01e-15 71.2
MsaG041691 MtrunA17_Chr1g0193871 51.667 60 28 1 6 64 9 68 1.01e-15 71.2
MsaG041691 MtrunA17_Chr1g0193881 51.667 60 28 1 6 64 9 68 1.01e-15 71.2
MsaG041691 MtrunA17_Chr4g0013361 41.975 81 46 1 8 87 10 90 1.60e-14 71.6
MsaG041691 MtrunA17_Chr7g0247131 62.222 45 17 0 40 84 10 54 1.87e-14 71.2
MsaG041691 MtrunA17_Chr1g0157731 42.308 78 44 1 7 84 88 164 2.22e-14 72.4
MsaG041691 MtrunA17_Chr6g0460661 42.667 75 42 1 10 84 16 89 2.56e-14 68.6
MsaG041691 MtrunA17_Chr7g0229131 66.667 45 15 0 40 84 4 48 2.94e-14 68.6
MsaG041691 MtrunA17_Chr7g0238651 42.683 82 45 1 13 92 10 91 8.84e-14 70.1
MsaG041691 MtrunA17_Chr3g0117511 44.000 75 41 1 10 84 183 256 8.94e-14 70.1
MsaG041691 MtrunA17_Chr8g0334881 39.506 81 48 1 8 87 10 90 1.42e-13 68.9
MsaG041691 MtrunA17_Chr5g0434901 67.442 43 14 0 42 84 7 49 1.60e-13 65.5
MsaG041691 MtrunA17_Chr5g0429661 44.000 75 41 1 10 84 122 195 1.73e-13 68.9
MsaG041691 MtrunA17_Chr7g0229101 64.444 45 16 0 40 84 4 48 2.26e-13 67.0
MsaG041691 MtrunA17_Chr5g0401731 42.667 75 42 1 10 84 15 88 3.77e-13 67.8
MsaG041691 MtrunA17_Chr3g0139671 41.026 78 45 1 7 84 82 158 8.61e-13 67.8
MsaG041691 MtrunA17_Chr6g0454921 40.698 86 48 2 1 84 4 88 1.16e-12 65.1
MsaG041691 MtrunA17_Chr4g0058991 46.835 79 33 4 10 84 209 282 1.98e-12 66.2
MsaG041691 MtrunA17_Chr7g0238631 39.744 78 46 1 7 84 110 186 2.57e-12 66.2
MsaG041691 MtrunA17_Chr6g0480581 40.260 77 45 1 8 84 2 77 3.79e-12 64.3
MsaG041691 MtrunA17_Chr4g0053431 42.667 75 42 1 10 84 5 78 4.30e-12 64.3
MsaG041691 MtrunA17_Chr4g0008551 44.737 76 39 2 10 84 38 111 4.41e-12 65.1
MsaG041691 MtrunA17_Chr3g0133601 42.667 75 42 1 10 84 37 110 1.95e-11 62.0
MsaG041691 MtrunA17_Chr4g0042501 38.667 75 45 1 10 84 105 178 4.03e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041691 AT1G54210.3 91.304 92 8 0 157 248 5 96 2.72e-57 177
MsaG041691 AT1G54210.1 91.304 92 8 0 157 248 5 96 2.72e-57 177
MsaG041691 AT3G13970.1 87.097 93 12 0 156 248 2 94 3.17e-56 175
MsaG041691 AT3G13970.4 83.784 74 12 0 156 229 2 75 9.88e-40 132
MsaG041691 AT5G35550.1 67.089 79 26 0 6 84 12 90 5.16e-34 123
MsaG041691 AT5G14750.1 61.538 78 30 0 7 84 15 92 2.12e-30 112
MsaG041691 AT5G40330.1 58.140 86 34 1 1 84 3 88 3.04e-30 112
MsaG041691 AT3G27920.1 56.962 79 34 0 6 84 12 90 1.72e-29 110
MsaG041691 AT5G54230.1 62.338 77 29 0 8 84 12 88 3.57e-29 112
MsaG041691 AT4G34990.1 55.682 88 35 1 1 84 1 88 3.72e-29 111
MsaG041691 AT3G13540.1 58.442 77 32 0 8 84 23 99 8.09e-29 109
MsaG041691 AT1G66370.1 57.143 84 36 0 1 84 1 84 3.01e-28 108
MsaG041691 AT5G60890.1 55.682 88 35 1 1 84 1 88 3.04e-28 109
MsaG041691 AT5G12870.1 59.494 79 32 0 6 84 16 94 4.08e-28 108
MsaG041691 AT1G22640.1 53.409 88 37 1 1 84 1 88 4.38e-28 108
MsaG041691 AT2G16720.1 54.545 88 36 1 1 84 1 88 5.29e-28 108
MsaG041691 AT4G38620.1 53.409 88 37 1 1 84 1 88 1.17e-27 107
MsaG041691 AT4G09460.1 54.545 88 36 1 1 84 1 88 1.38e-27 106
MsaG041691 AT5G52600.1 59.740 77 31 0 8 84 12 88 1.61e-27 105
MsaG041691 AT1G74080.1 57.955 88 33 1 1 84 1 88 1.99e-27 107
MsaG041691 AT5G49330.1 54.762 84 37 1 8 90 12 95 9.39e-27 106
MsaG041691 AT2G47190.1 54.321 81 37 0 7 87 19 99 1.14e-26 104
MsaG041691 AT1G74650.1 60.256 78 31 0 7 84 11 88 2.28e-26 105
MsaG041691 AT4G28110.1 53.409 88 37 1 1 84 1 88 2.62e-26 103
MsaG041691 AT3G01530.1 58.442 77 32 0 8 84 25 101 2.63e-26 102
MsaG041691 AT3G30210.1 58.667 75 31 0 10 84 29 103 3.06e-26 103
MsaG041691 AT2G47460.1 54.545 77 35 0 8 84 12 88 3.39e-26 105
MsaG041691 AT5G61420.2 55.682 88 35 1 1 84 1 88 3.55e-26 105
MsaG041691 AT4G05100.1 52.809 89 37 1 1 84 1 89 4.14e-26 104
MsaG041691 AT1G35515.1 51.136 88 39 1 1 84 1 88 4.16e-26 101
MsaG041691 AT4G21440.1 53.409 88 37 1 1 84 1 88 4.39e-26 104
MsaG041691 AT1G06180.1 58.442 77 32 0 8 84 12 88 5.40e-26 102
MsaG041691 AT3G62610.1 57.143 77 33 0 8 84 12 88 6.11e-26 103
MsaG041691 AT4G01680.3 55.696 79 35 0 6 84 10 88 6.12e-26 102
MsaG041691 AT3G23250.1 54.545 77 35 0 8 84 12 88 6.56e-26 102
MsaG041691 AT5G40350.1 56.410 78 34 0 7 84 16 93 9.82e-26 100
MsaG041691 AT4G01680.1 55.696 79 35 0 6 84 10 88 1.18e-25 103
MsaG041691 AT3G28910.1 55.682 88 35 1 1 84 1 88 1.21e-25 102
MsaG041691 AT5G26660.1 56.962 79 34 0 6 84 10 88 1.46e-25 103
MsaG041691 AT5G07690.1 55.682 88 35 1 1 84 1 88 1.67e-25 102
MsaG041691 AT5G16770.4 52.273 88 38 1 1 84 1 88 1.83e-25 102
MsaG041691 AT5G16770.3 52.273 88 38 1 1 84 1 88 1.83e-25 102
MsaG041691 AT1G57560.2 53.165 79 37 0 6 84 10 88 1.88e-25 101
MsaG041691 AT3G08500.1 55.128 78 35 0 7 84 29 106 2.17e-25 102
MsaG041691 AT5G16770.1 52.273 88 38 1 1 84 1 88 2.32e-25 102
MsaG041691 AT5G16770.2 52.273 88 38 1 1 84 1 88 2.32e-25 102
MsaG041691 AT3G27810.1 54.321 81 37 0 7 87 19 99 2.34e-25 100
MsaG041691 AT1G57560.1 53.165 79 37 0 6 84 10 88 2.42e-25 102
MsaG041691 AT1G63910.1 54.430 79 36 0 6 84 10 88 2.66e-25 102
MsaG041691 AT3G47600.1 57.143 77 33 0 8 84 12 88 3.17e-25 102
MsaG041691 AT1G18570.1 55.056 89 35 1 1 84 1 89 3.24e-25 102
MsaG041691 AT5G07700.1 58.442 77 32 0 8 84 12 88 4.69e-25 101
MsaG041691 AT5G07700.2 58.442 77 32 0 8 84 12 88 4.69e-25 101
MsaG041691 AT1G08810.1 57.143 77 33 0 8 84 12 88 5.35e-25 100
MsaG041691 AT1G68320.1 53.165 79 37 0 6 84 17 95 6.97e-25 100
MsaG041691 AT4G17785.2 53.933 89 36 1 1 84 1 89 7.18e-25 101
MsaG041691 AT4G17785.1 53.933 89 36 1 1 84 1 89 7.33e-25 101
MsaG041691 AT3G12720.1 51.282 78 38 0 7 84 21 98 9.93e-25 100
MsaG041691 AT3G13970.3 76.364 55 13 0 156 210 2 56 1.12e-24 93.6
MsaG041691 AT3G13970.2 76.364 55 13 0 156 210 2 56 1.12e-24 93.6
MsaG041691 AT3G01140.2 53.409 88 37 1 1 84 1 88 1.31e-24 100
MsaG041691 AT1G09540.1 53.165 79 37 0 6 84 10 88 1.37e-24 100
MsaG041691 AT5G15310.4 55.844 77 34 0 8 84 12 88 1.47e-24 98.6
MsaG041691 AT1G74430.1 57.143 77 33 0 8 84 12 88 1.50e-24 99.0
MsaG041691 AT3G13890.2 53.165 79 37 0 6 84 10 88 1.56e-24 100
MsaG041691 AT1G48000.1 53.846 78 36 0 7 84 31 108 1.89e-24 98.2
MsaG041691 AT5G62470.2 55.844 77 34 0 8 84 12 88 2.13e-24 100
MsaG041691 AT3G24310.1 58.667 75 31 0 10 84 20 94 2.25e-24 98.6
MsaG041691 AT2G32460.2 51.807 83 40 0 10 92 8 90 2.88e-24 100
MsaG041691 AT2G32460.1 51.807 83 40 0 10 92 20 102 2.88e-24 101
MsaG041691 AT5G15310.2 53.409 88 37 1 1 84 1 88 3.45e-24 99.0
MsaG041691 AT5G15310.1 53.409 88 37 1 1 84 1 88 3.52e-24 99.0
MsaG041691 AT4G13480.1 57.333 75 32 0 10 84 8 82 3.62e-24 97.8
MsaG041691 AT3G02940.2 51.136 88 39 1 1 84 1 88 3.73e-24 98.6
MsaG041691 AT3G02940.1 51.136 88 39 1 1 84 1 88 4.36e-24 98.6
MsaG041691 AT3G02940.3 51.136 88 39 1 1 84 1 88 4.36e-24 98.6
MsaG041691 AT3G61250.1 51.948 77 37 0 8 84 12 88 4.97e-24 98.2
MsaG041691 AT3G01140.1 55.844 77 34 0 8 84 55 131 5.13e-24 99.4
MsaG041691 AT5G55020.1 50.602 83 41 0 10 92 28 110 5.58e-24 100
MsaG041691 AT1G25340.1 53.846 78 36 0 7 84 17 94 7.36e-24 97.4
MsaG041691 AT1G18710.1 55.844 77 34 0 8 84 12 88 7.62e-24 97.1
MsaG041691 AT5G10280.1 47.917 96 46 1 1 92 1 96 8.91e-24 98.2
MsaG041691 AT5G65230.1 51.136 88 39 1 1 84 1 88 9.20e-24 97.8
MsaG041691 AT2G31180.1 53.247 77 36 0 8 84 12 88 1.07e-23 96.3
MsaG041691 AT3G28470.1 50.000 88 40 1 1 84 1 88 1.14e-23 97.4
MsaG041691 AT1G66380.2 59.524 84 34 0 1 84 1 84 2.41e-23 91.7
MsaG041691 AT2G26960.1 50.633 79 39 0 6 84 18 96 5.18e-23 97.1
MsaG041691 AT3G12820.1 46.512 86 46 0 7 92 13 98 8.97e-23 93.6
MsaG041691 AT5G06100.1 53.247 77 36 0 8 84 32 108 1.07e-22 96.3
MsaG041691 AT1G34670.1 50.000 88 40 1 1 84 1 88 1.22e-22 95.5
MsaG041691 AT1G66380.1 59.524 84 34 0 1 84 1 84 1.57e-22 90.1
MsaG041691 AT5G62470.1 55.844 77 33 1 8 84 12 87 1.79e-22 94.7
MsaG041691 AT5G56110.1 49.367 79 40 0 6 84 10 88 1.97e-22 94.4
MsaG041691 AT4G01680.2 48.352 91 35 1 6 84 10 100 1.99e-22 94.7
MsaG041691 AT5G06100.5 53.247 77 36 0 8 84 32 108 2.14e-22 95.9
MsaG041691 AT5G06100.2 53.247 77 36 0 8 84 32 108 2.14e-22 95.9
MsaG041691 AT5G06100.3 53.247 77 36 0 8 84 32 108 2.14e-22 95.9
MsaG041691 AT5G06100.4 53.247 77 36 0 8 84 32 108 2.14e-22 95.9
MsaG041691 AT1G56650.1 60.714 84 33 0 1 84 1 84 3.38e-22 92.0
MsaG041691 AT3G13890.1 47.727 88 37 1 6 84 10 97 1.03e-21 92.8
MsaG041691 AT1G56160.1 50.000 78 39 0 7 84 13 90 1.85e-21 91.3
MsaG041691 AT4G12350.1 51.948 77 37 0 8 84 12 88 1.95e-21 90.9
MsaG041691 AT1G16490.1 49.351 77 39 0 8 84 14 90 2.00e-21 90.5
MsaG041691 AT1G66390.1 59.524 84 34 0 1 84 1 84 3.78e-21 89.4
MsaG041691 AT3G11440.2 48.052 77 40 0 8 84 41 117 5.20e-21 91.7
MsaG041691 AT3G11440.3 48.052 77 40 0 8 84 41 117 8.66e-21 91.3
MsaG041691 AT3G11440.4 48.052 77 40 0 8 84 41 117 8.66e-21 91.3
MsaG041691 AT3G11440.1 48.052 77 40 0 8 84 41 117 8.66e-21 91.3
MsaG041691 AT4G22680.1 50.649 77 38 0 8 84 12 88 9.70e-21 88.6
MsaG041691 AT4G26930.1 43.529 85 48 0 8 92 19 103 1.03e-20 90.5
MsaG041691 AT3G48920.1 44.578 83 46 0 2 84 12 94 2.09e-20 87.8
MsaG041691 AT1G66230.1 50.649 77 38 0 8 84 12 88 3.68e-20 87.4
MsaG041691 AT4G25560.1 50.667 75 37 0 10 84 12 86 3.85e-20 87.4
MsaG041691 AT1G79180.1 44.706 85 47 0 8 92 14 98 3.99e-20 87.4
MsaG041691 AT5G59780.3 43.678 87 49 0 6 92 6 92 8.80e-20 85.5
MsaG041691 AT3G49690.1 49.438 89 40 2 1 84 1 89 1.26e-19 86.3
MsaG041691 AT4G37780.1 51.111 90 37 4 1 84 1 89 1.57e-19 85.9
MsaG041691 AT5G14340.1 47.059 85 45 0 8 92 24 108 2.07e-19 85.1
MsaG041691 AT3G53200.1 45.882 85 46 0 8 92 9 93 3.15e-19 84.0
MsaG041691 AT5G35550.2 75.510 49 12 0 36 84 45 93 3.74e-19 84.3
MsaG041691 AT3G46130.1 43.373 83 47 0 10 92 11 93 7.81e-19 83.2
MsaG041691 AT1G25340.2 50.000 78 34 1 7 84 17 89 8.68e-19 83.6
MsaG041691 AT5G23000.1 47.191 89 42 2 1 84 1 89 1.06e-18 84.0
MsaG041691 AT1G25340.3 50.000 78 34 1 7 84 17 89 1.34e-18 83.6
MsaG041691 AT5G49620.1 49.398 83 42 0 2 84 20 102 1.54e-18 83.2
MsaG041691 AT5G65790.1 47.191 89 42 2 1 84 1 89 1.56e-18 84.0
MsaG041691 AT5G52260.1 48.780 82 42 0 3 84 7 88 2.64e-18 82.0
MsaG041691 AT5G57620.1 48.315 89 41 2 1 84 1 89 2.69e-18 83.2
MsaG041691 AT5G16600.1 48.052 77 40 0 8 84 12 88 3.19e-18 82.8
MsaG041691 AT3G06490.1 45.238 84 46 0 7 90 18 101 3.81e-18 82.4
MsaG041691 AT2G36890.1 44.944 89 44 2 1 84 1 89 4.81e-18 82.0
MsaG041691 AT2G36890.2 44.944 89 44 2 1 84 42 130 6.66e-18 82.0
MsaG041691 AT5G49620.2 48.780 82 42 0 2 83 20 101 8.96e-18 81.3
MsaG041691 AT2G26950.1 39.080 87 53 0 6 92 14 100 3.64e-17 80.1
MsaG041691 AT5G14750.3 70.732 41 12 0 44 84 18 58 9.10e-16 73.2
MsaG041691 AT5G62320.1 44.048 84 40 1 8 84 13 96 1.83e-15 73.9
MsaG041691 AT5G26660.2 68.182 44 14 0 41 84 14 57 4.74e-15 73.6
MsaG041691 AT1G79180.2 32.773 119 47 1 7 92 13 131 6.27e-15 73.6
MsaG041691 AT3G60460.1 41.250 80 46 1 6 84 9 88 2.76e-14 71.2
MsaG041691 AT3G12820.2 57.143 49 21 0 44 92 2 50 9.14e-14 68.2
MsaG041691 AT3G47600.2 65.909 44 15 0 41 84 39 82 1.18e-13 69.7
MsaG041691 AT5G02320.1 39.744 78 46 1 7 84 124 200 1.20e-13 70.5
MsaG041691 AT5G02320.2 39.744 78 46 1 7 84 124 200 1.20e-13 70.5
MsaG041691 AT3G27785.1 47.368 76 37 3 10 84 189 262 1.35e-13 70.1
MsaG041691 AT4G32730.5 41.026 78 45 1 7 84 84 160 1.40e-13 70.5
MsaG041691 AT4G32730.4 41.026 78 45 1 7 84 84 160 1.40e-13 70.5
MsaG041691 AT4G32730.3 41.026 78 45 1 7 84 84 160 1.40e-13 70.5
MsaG041691 AT4G32730.2 41.026 78 45 1 7 84 84 160 1.40e-13 70.5
MsaG041691 AT5G02320.3 39.744 78 46 1 7 84 64 140 1.64e-13 70.1
MsaG041691 AT4G32730.1 41.026 78 45 1 7 84 84 160 1.69e-13 70.1
MsaG041691 AT5G40360.1 37.662 77 47 1 8 84 156 231 2.50e-13 68.9
MsaG041691 AT2G37630.1 45.946 74 38 1 13 84 7 80 3.43e-13 68.6
MsaG041691 AT5G11510.2 38.462 78 47 1 7 84 78 154 5.17e-13 68.6
MsaG041691 AT5G11510.3 38.462 78 47 1 7 84 78 154 5.20e-13 68.9
MsaG041691 AT5G11510.1 38.462 78 47 1 7 84 78 154 5.20e-13 68.9
MsaG041691 AT5G11510.4 38.462 78 47 1 7 84 78 154 5.20e-13 68.9
MsaG041691 AT5G11510.5 38.462 78 47 1 7 84 78 154 5.37e-13 68.6
MsaG041691 AT5G11050.1 40.506 79 46 1 6 84 101 178 5.46e-13 68.2
MsaG041691 AT5G58850.1 41.463 82 47 1 3 84 98 178 5.58e-13 68.2
MsaG041691 AT5G40350.2 58.696 46 19 0 39 84 3 48 8.92e-13 65.1
MsaG041691 AT3G27810.2 57.447 47 20 0 41 87 4 50 1.53e-12 64.7
MsaG041691 AT4G37260.1 42.667 75 42 1 10 84 13 86 2.33e-12 65.9
MsaG041691 AT3G55730.1 46.053 76 38 2 10 84 56 129 2.79e-12 66.2
MsaG041691 AT4G18770.1 41.333 75 43 1 10 84 217 290 3.09e-12 66.2
MsaG041691 AT3G53200.2 61.364 44 17 0 41 84 9 52 3.63e-12 63.9
MsaG041691 AT1G69560.2 38.272 81 49 1 4 84 117 196 5.30e-12 65.1
MsaG041691 AT1G69560.1 38.272 81 49 1 4 84 101 180 5.38e-12 65.1
MsaG041691 AT2G23290.1 41.333 75 43 1 10 84 13 86 1.53e-11 63.5
MsaG041691 AT3G09370.1 40.000 75 44 1 10 84 130 203 1.84e-11 63.9
MsaG041691 AT3G09370.3 40.000 75 44 1 10 84 143 216 1.88e-11 63.9
MsaG041691 AT3G09370.2 40.000 75 44 1 10 84 135 208 1.92e-11 63.9
MsaG041691 AT3G46130.3 53.191 47 22 0 38 84 7 53 2.26e-11 62.0
MsaG041691 AT4G33450.1 40.000 75 44 1 10 84 19 92 2.54e-11 62.4
MsaG041691 AT5G67300.1 40.000 75 44 1 10 84 6 79 3.32e-11 62.4
MsaG041691 AT5G59780.2 50.000 52 26 0 41 92 20 71 4.53e-11 61.2
MsaG041691 AT3G09230.1 42.667 75 42 1 10 84 55 128 4.76e-11 62.4
MsaG041691 AT3G46130.4 50.000 52 26 0 41 92 20 71 5.13e-11 61.2
MsaG041691 AT1G26780.2 38.961 77 46 1 8 84 96 171 7.90e-11 61.6
MsaG041691 AT1G26780.1 38.961 77 46 1 8 84 96 171 8.28e-11 61.2

Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCATCAATTCAAAATTT+TGG 0.180669 8:+10662373 MsaT041691.1:CDS
TCCATGAATGACAACATATT+TGG 0.182285 8:-10661493 None:intergenic
TTAATTTAGCACCTGCATTT+TGG 0.200719 8:-10661539 None:intergenic
AGTTCTTCTTCACAGAAAAT+AGG 0.214719 8:+10666673 MsaT041691.1:intron
ATAAGACTTCATCGTCTTCT+TGG 0.253123 8:+10661939 MsaT041691.1:CDS
TCCAAATATGTTGTCATTCA+TGG 0.267011 8:+10661492 MsaT041691.1:CDS
TCAGTGTTCGTTCTTCTTCA+TGG 0.287098 8:+10666699 MsaT041691.1:CDS
GTTCTTCTTCACAGAAAATA+GGG 0.316856 8:+10666674 MsaT041691.1:intron
TTCATCGTCTTCTTGGTAAC+AGG 0.357709 8:+10661946 MsaT041691.1:CDS
TGTCAACTACGCTTGTTCTA+TGG 0.365283 8:+10670344 MsaT041691.1:CDS
AAATCAATGACCAGTTCATC+AGG 0.379567 8:-10669029 None:intergenic
TGATCATCAAGATCAATTGA+TGG 0.381636 8:+10662466 MsaT041691.1:CDS
TTCACCGAACCCTGATGAAC+TGG 0.388516 8:+10669019 MsaT041691.1:CDS
ACCTTGTGATCCTCCATTTG+TGG 0.406954 8:-10662518 None:intergenic
TCATTCATGGAGAAGGAAAA+TGG 0.417247 8:+10661505 MsaT041691.1:CDS
GCACCTTTATTAACCTCCTT+AGG 0.422387 8:-10661441 None:intergenic
AGTCCTAAGGAGGTTAATAA+AGG 0.437320 8:+10661438 MsaT041691.1:CDS
CTACGCTTGTTCTATGGCAT+GGG 0.441506 8:+10670350 MsaT041691.1:CDS
AACTTGGATTGTTTGAGAAT+AGG 0.443789 8:-10666873 None:intergenic
ACAGCTCCACAGGGAGTCAT+TGG 0.444257 8:+10668892 MsaT041691.1:CDS
AAGGAAAAGTACCTTGAACT+TGG 0.453341 8:-10666889 None:intergenic
TCTCAAACAATCCAAGTTCA+AGG 0.453483 8:+10666878 MsaT041691.1:CDS
TTCTTCGCAGACAGCTCCAC+AGG 0.454460 8:+10668882 MsaT041691.1:CDS
TAATTCAAAGATTCCACAAA+TGG 0.463789 8:+10662505 MsaT041691.1:CDS
CAAAAGGTTGCCCAAAATGC+AGG 0.474230 8:+10661528 MsaT041691.1:CDS
ACTACGCTTGTTCTATGGCA+TGG 0.480273 8:+10670349 MsaT041691.1:CDS
TATTTGACATGGCAGATAGC+TGG 0.490328 8:+10668830 MsaT041691.1:intron
TAACCTTTACGAACAGAAGT+TGG 0.498862 8:-10666736 None:intergenic
TCTCCAACTTCTGTTCGTAA+AGG 0.513941 8:+10666733 MsaT041691.1:CDS
ATGACCAGTTCATCAGGGTT+CGG 0.516263 8:-10669023 None:intergenic
TATGATCATGTCCTCTTCAT+CGG 0.523234 8:-10661919 None:intergenic
ATATCGCCTCTCTTTATACC+TGG 0.529499 8:-10661891 None:intergenic
TGGAGAAGGAAAATGGCAAA+AGG 0.533124 8:+10661512 MsaT041691.1:CDS
TATGTTGTCATTCATGGAGA+AGG 0.552003 8:+10661498 MsaT041691.1:CDS
TAACATGGTTAGAAGTCCTA+AGG 0.553471 8:+10661425 None:intergenic
GTTGTTCATCTTAGAGCCAC+CGG 0.557111 8:+10666843 MsaT041691.1:CDS
AGGAGGTTAATAAAGGTGCT+TGG 0.559589 8:+10661445 MsaT041691.1:CDS
TTTGAGAATAGGAGCATCAC+CGG 0.562343 8:-10666862 None:intergenic
AGCGGAAGTGAGTATGATCA+AGG 0.564325 8:+10662404 MsaT041691.1:CDS
GCGAAGAAAGTCTATCACTT+TGG 0.564644 8:-10668867 None:intergenic
CGATATCTCTACCGATGAAG+AGG 0.571337 8:+10661908 MsaT041691.1:CDS
TTCAAAGATTCCACAAATGG+AGG 0.588987 8:+10662508 MsaT041691.1:CDS
TCCACAAATGGAGGATCACA+AGG 0.589389 8:+10662517 MsaT041691.1:CDS
TATATGGAGTAGGTTTAAAG+CGG 0.591191 8:+10661826 MsaT041691.1:intron
CTCAAACCAGGTATAAAGAG+AGG 0.598083 8:+10661885 MsaT041691.1:CDS
CATCAAGATCAATTGATGGT+TGG 0.610901 8:+10662470 MsaT041691.1:CDS
AATCAATGACCAGTTCATCA+GGG 0.626890 8:-10669028 None:intergenic
TCCAAAGCCTAGGAGACTGA+AGG 0.628232 8:+10662349 MsaT041691.1:intron
GGAGTAGGTTTAAAGCGGTG+TGG 0.637958 8:+10661831 MsaT041691.1:intron
TGGTTGAATTATCTCAAACC+AGG 0.638850 8:+10661873 MsaT041691.1:CDS
TCTTCGCAGACAGCTCCACA+GGG 0.645509 8:+10668883 MsaT041691.1:CDS
TACGCTTGTTCTATGGCATG+GGG 0.656505 8:+10670351 MsaT041691.1:CDS
CATGGTTAGAAGTCCTAAGG+AGG 0.660711 8:+10661428 None:intergenic
GAATGACAACATATTTGGAG+AGG 0.662814 8:-10661488 None:intergenic
GAGAATAGGAGCATCACCGG+TGG 0.697312 8:-10666859 None:intergenic
TGTTTACCAATGACTCCCTG+TGG 0.715702 8:-10668898 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 10661429 10670377 10661429 ID=MsaG041691
Chr8 mRNA 10661429 10670377 10661429 ID=MsaT041691.1;Parent=MsaG041691
Chr8 exon 10661429 10661549 10661429 ID=MsaT041691.1.exon1;Parent=MsaT041691.1
Chr8 CDS 10661429 10661549 10661429 ID=cds.MsaT041691.1;Parent=MsaT041691.1
Chr8 exon 10661838 10661967 10661838 ID=MsaT041691.1.exon2;Parent=MsaT041691.1
Chr8 CDS 10661838 10661967 10661838 ID=cds.MsaT041691.1;Parent=MsaT041691.1
Chr8 exon 10662361 10662538 10662361 ID=MsaT041691.1.exon3;Parent=MsaT041691.1
Chr8 CDS 10662361 10662538 10662361 ID=cds.MsaT041691.1;Parent=MsaT041691.1
Chr8 exon 10666688 10666754 10666688 ID=MsaT041691.1.exon4;Parent=MsaT041691.1
Chr8 CDS 10666688 10666754 10666688 ID=cds.MsaT041691.1;Parent=MsaT041691.1
Chr8 exon 10666841 10666899 10666841 ID=MsaT041691.1.exon5;Parent=MsaT041691.1
Chr8 CDS 10666841 10666899 10666841 ID=cds.MsaT041691.1;Parent=MsaT041691.1
Chr8 exon 10668845 10668913 10668845 ID=MsaT041691.1.exon6;Parent=MsaT041691.1
Chr8 CDS 10668845 10668913 10668845 ID=cds.MsaT041691.1;Parent=MsaT041691.1
Chr8 exon 10668996 10669058 10668996 ID=MsaT041691.1.exon7;Parent=MsaT041691.1
Chr8 CDS 10668996 10669058 10668996 ID=cds.MsaT041691.1;Parent=MsaT041691.1
Chr8 exon 10670318 10670377 10670318 ID=MsaT041691.1.exon8;Parent=MsaT041691.1
Chr8 CDS 10670318 10670377 10670318 ID=cds.MsaT041691.1;Parent=MsaT041691.1
Gene Sequence

>MsaT041691.1

ATGGTTAGAAGTCCTAAGGAGGTTAATAAAGGTGCTTGGTCTCGTGAAGAAGATGATATCCTCTCCAAATATGTTGTCATTCATGGAGAAGGAAAATGGCAAAAGGTTGCCCAAAATGCAGGTTTAAAGCGGTGTGGAAAAAGTTGCAGACAAAGATGGTTGAATTATCTCAAACCAGGTATAAAGAGAGGCGATATCTCTACCGATGAAGAGGACATGATCATAAGACTTCATCGTCTTCTTGGTAACAGGAGACTGAAGGCTGTTCATCAATTCAAAATTTTGGAGAAGAATAGCGGAAGTGAGTATGATCAAGGCAGTGATGAAACTTCTATTGCTGATTTTCTCATTGACTTTGATCATCAAGATCAATTGATGGTTGGTGATGATGAGTCTAATTCAAAGATTCCACAAATGGAGGATCACAAGAAAATAGGGATTCAGTGTTCGTTCTTCTTCATGGCTGCTGCTGAATCTCCAACTTCTGTTCGTAAAGTGGTTGTTCATCTTAGAGCCACCGGTGATGCTCCTATTCTCAAACAATCCAAGTTCAAGATAGCTGGAACTGATAAATTTGCCAAAGTGATAGACTTTCTTCGCAGACAGCTCCACAGGGAGTCATTGTTTGTATATGTCAACAGTGCTTTTTCACCGAACCCTGATGAACTGGTCATTGATTTGTATAATAATTTTGGCTTTGATGGAAAACTGGTTGTCAACTACGCTTGTTCTATGGCATGGGGCTAA
Protein sequence

>MsaT041691.1

MVRSPKEVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISTDEEDMIIRLHRLLGNRRLKAVHQFKILEKNSGSEYDQGSDETSIADFLIDFDHQDQLMVGDDESNSKIPQMEDHKKIGIQCSFFFMAAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVNSAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG*