AlfalfaGEDB | MsaG041694

M. sativa ssp. caerulea / MsaG041694

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402
PFAM: PF08880.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041694	XP_003627270.3	95.977	348	9	2	1	343	1	348	0.0	688

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041694	sp\|Q8L8A6\|GRF5_ARATH	41.192	369	163	11	3	321	8	372	5.17e-70	226

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041694	tr\|A0A396GLB2\|A0A396GLB2_MEDTR	95.977	348	9	2	1	343	1	348	0.0	688

TFs/TRs:

Gene ID	Type	Classification
MsaG041694	TF	GRF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003265	MsaG041694	0.884122	5.384162e-71	1.181820e-67
MsaG004525	MsaG041694	0.890869	1.471729e-73	4.538016e-70
MsaG004802	MsaG041694	0.806128	1.619529e-49	2.520939e-47
MsaG006188	MsaG041694	0.836696	1.471789e-56	5.187590e-54
MsaG006832	MsaG041694	0.880455	1.144551e-69	2.110284e-66
MsaG008253	MsaG041694	0.873408	3.096967e-67	4.153193e-64
MsaG009109	MsaG041694	0.856760	5.027390e-62	3.462829e-59
MsaG009110	MsaG041694	0.825310	8.919921e-54	2.263036e-51
MsaG009580	MsaG041694	0.814881	2.125377e-51	4.096225e-49
MsaG010958	MsaG041694	0.879962	1.713120e-69	3.085830e-66
MsaG011507	MsaG041694	0.833413	9.810433e-56	3.134871e-53
MsaG012185	MsaG041694	0.852566	8.138280e-61	4.821961e-58
MsaG014087	MsaG041694	0.827865	2.207257e-54	6.013257e-52
MsaG015664	MsaG041694	0.810861	1.599378e-50	2.789215e-48
MsaG016670	MsaG041694	0.859423	8.196001e-63	6.234089e-60
MsaG017241	MsaG041694	0.858282	1.791099e-62	1.305248e-59
MsaG017522	MsaG041694	0.838536	4.991195e-57	1.861326e-54
MsaG017623	MsaG041694	0.868590	1.179922e-65	1.289490e-62
MsaG017881	MsaG041694	0.835581	2.816645e-56	9.600113e-54
MsaG019271	MsaG041694	0.840175	1.882661e-57	7.389678e-55
MsaG020341	MsaG041694	0.866074	7.454996e-65	7.352680e-62
MsaG020569	MsaG041694	0.805149	2.593014e-49	3.944856e-47
MsaG021424	MsaG041694	0.839495	2.824409e-57	1.085233e-54
MsaG022105	MsaG041694	0.826654	4.292380e-54	1.130391e-51
MsaG022106	MsaG041694	0.813532	4.207726e-51	7.839333e-49
MsaG022205	MsaG041694	0.840405	1.640529e-57	6.486198e-55
MsaG022563	MsaG041694	0.817846	4.647085e-52	9.661031e-50
MsaG022972	MsaG041694	0.812388	7.474853e-51	1.353425e-48
MsaG023622	MsaG041694	0.827069	3.418595e-54	9.107442e-52
MsaG023726	MsaG041694	0.801482	1.478290e-48	2.066748e-46
MsaG023847	MsaG041694	0.883477	9.286489e-71	1.976000e-67
MsaG024363	MsaG041694	0.863067	6.434506e-64	5.630807e-61
MsaG027152	MsaG041694	0.801110	1.759940e-48	2.439868e-46
MsaG028082	MsaG041694	0.809946	2.514488e-50	4.288422e-48
MsaG028565	MsaG041694	0.816095	1.144543e-51	2.274707e-49
MsaG029179	MsaG041694	0.837420	9.637180e-57	3.472350e-54
MsaG029279	MsaG041694	0.833245	1.080231e-55	3.434782e-53
MsaG029746	MsaG041694	0.852718	7.368192e-61	4.389421e-58
MsaG029755	MsaG041694	0.823243	2.715478e-53	6.512073e-51
MsaG029761	MsaG041694	0.800252	2.628973e-48	3.574704e-46
MsaG032184	MsaG041694	0.811187	1.360538e-50	2.391710e-48
MsaG032291	MsaG041694	0.810545	1.870071e-50	3.236328e-48
MsaG033280	MsaG041694	0.840167	1.891313e-57	7.421928e-55
MsaG034021	MsaG041694	0.818396	3.495724e-52	7.371182e-50
MsaG035427	MsaG041694	0.817920	4.472265e-52	9.315477e-50
MsaG039168	MsaG041694	0.805026	2.751742e-49	4.174409e-47
MsaG040486	MsaG041694	0.820837	9.748458e-53	2.191916e-50
MsaG041663	MsaG041694	0.825346	8.748591e-54	2.221795e-51
MsaG041694	MsaG046305	0.839010	3.769213e-57	1.426571e-54
MsaG041694	MsaG046767	0.819644	1.824086e-52	3.973920e-50
MsaG041694	MsaG004914	0.815123	1.879818e-51	3.644959e-49
MsaG041694	MsaG005679	0.823518	2.344038e-53	5.663287e-51
MsaG041694	MsaG019926	0.819632	1.835091e-52	3.996637e-50
MsaG041694	MsaG019850	0.864069	3.156818e-64	2.873655e-61
MsaG041694	MsaG027739	0.900188	2.165037e-77	1.120143e-73
MsaG041694	MsaG030720	0.857905	2.315401e-62	1.663729e-59
MsaG041694	MsaG030259	0.809697	2.843025e-50	4.819675e-48
MsaG041694	MsaG032992	0.811104	1.417843e-50	2.487380e-48
MsaG041694	MsaG032829	0.812308	7.777075e-51	1.405335e-48
MsaG041694	MsaG035088	0.897246	3.845192e-76	1.679381e-72
MsaG041694	MsaG037826	0.800005	2.949070e-48	3.987899e-46
MsaG041694	MsaG041261	0.918197	5.302618e-86	8.765884e-82

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041694	MtrunA17_Chr8g0343881	95.977	348	9	2	1	343	1	348	0.0	688
MsaG041694	MtrunA17_Chr4g0070591	44.134	358	154	16	1	333	1	337	2.11e-75	236
MsaG041694	MtrunA17_Chr2g0300511	42.075	347	157	12	7	333	3	325	1.44e-68	218
MsaG041694	MtrunA17_Chr4g0021261	38.415	328	147	12	10	333	24	300	4.60e-55	183
MsaG041694	MtrunA17_Chr1g0152191	52.846	123	54	1	1	119	134	256	1.09e-40	150
MsaG041694	MtrunA17_Chr5g0409471	58.333	108	33	2	12	119	17	112	2.14e-39	142
MsaG041694	MtrunA17_Chr7g0265931	54.472	123	46	4	12	132	79	193	8.53e-36	133
MsaG041694	MtrunA17_Chr3g0127641	47.706	109	39	2	12	120	113	203	2.42e-28	115
MsaG041694	MtrunA17_Chr8g0351521	36.424	151	79	2	8	158	51	184	5.86e-21	93.2
MsaG041694	MtrunA17_Chr8g0351521	52.727	55	26	0	75	129	302	356	1.00e-12	68.6
MsaG041694	MtrunA17_Chr8g0351291	64.103	39	14	0	75	113	51	89	1.23e-12	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041694	AT3G13960.1	41.192	369	163	11	3	321	8	372	5.26e-71	226
MsaG041694	AT2G06200.2	58.915	129	38	3	2	117	36	162	3.38e-43	151
MsaG041694	AT2G06200.1	59.836	122	34	3	9	117	4	123	6.71e-43	149
MsaG041694	AT4G37740.1	50.000	152	55	4	12	145	165	313	2.90e-41	151
MsaG041694	AT2G22840.1	57.018	114	35	4	12	119	134	239	3.58e-35	134
MsaG041694	AT2G36400.1	51.181	127	47	4	10	127	75	195	8.52e-35	131
MsaG041694	AT3G52910.1	41.206	199	94	6	11	195	82	271	1.58e-32	125
MsaG041694	AT2G06200.3	88.235	51	4	1	69	117	1	51	2.84e-25	100
MsaG041694	AT5G53660.1	47.222	108	40	1	12	119	60	150	8.79e-25	103
MsaG041694	AT4G24150.3	41.739	115	61	2	10	119	110	223	2.21e-24	103
MsaG041694	AT4G24150.2	41.739	115	61	2	10	119	148	261	3.36e-24	103
MsaG041694	AT4G24150.1	37.143	140	57	3	10	119	148	286	4.95e-22	97.1
MsaG041694	AT2G45480.2	46.535	101	54	0	16	116	29	129	6.75e-16	77.8
MsaG041694	AT2G45480.3	46.535	101	54	0	16	116	29	129	1.99e-15	77.4
MsaG041694	AT2G45480.3	47.500	80	31	3	40	119	281	349	2.19e-14	74.3
MsaG041694	AT2G45480.1	46.535	101	54	0	16	116	27	127	2.03e-15	77.4
MsaG041694	AT2G45480.1	47.500	80	31	3	40	119	279	347	2.17e-14	74.3

Find 57 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGAGCTTGAGTAAGACTTAA+AGG	0.217109	8:+10717660	None:intergenic
GGAGGCAAGTTCAAGGAATA+AGG	0.269692	8:-10717780	MsaT041694.1:CDS
CTTCTGCACCTCCCTGGCTC+TGG	0.278943	8:+10718451	None:intergenic
AAACCACTTCATCATTTCTT+TGG	0.279787	8:-10717514	MsaT041694.1:CDS
AGCCAGGAATCTGTGTTCTT+TGG	0.341985	8:+10717481	None:intergenic
CTTTCACAGTACTTTGAGTC+TGG	0.352106	8:+10718388	None:intergenic
CTAGATGAACCTGTAGCTTC+TGG	0.361439	8:+10717727	None:intergenic
CCCTTTCTCTACTTCTTCCA+TGG	0.361986	8:-10718206	MsaT041694.1:CDS
GAGTAGTAGCATCTTGAGTT+TGG	0.362099	8:+10718083	None:intergenic
GCTGTGTTTGTGTTATTTGT+TGG	0.366262	8:+10718295	None:intergenic
TTCTGCACCTCCCTGGCTCT+GGG	0.368474	8:+10718452	None:intergenic
GAGAGTAATAGTAAGGGTTT+TGG	0.368535	8:+10718146	None:intergenic
GCTGCTGTTGTTGTTGTTCA+AGG	0.381104	8:+10718249	None:intergenic
TATATGAGATCTGGTGGAAT+AGG	0.406485	8:+10718700	None:intergenic
AGAAAAGTAGACCCAGAGCC+AGG	0.407864	8:-10718463	MsaT041694.1:CDS
TCAAGTTCTTGCCATTGATT+TGG	0.410002	8:+10718763	None:intergenic
ATTGATTGAGAGTAATAGTA+AGG	0.410096	8:+10718139	None:intergenic
GAGCTTGAGTAAGACTTAAA+GGG	0.429522	8:+10717661	None:intergenic
GAAGAACAGATGGCAAGAAA+TGG	0.429768	8:-10718432	MsaT041694.1:CDS
CAGAAGCTACAGGTTCATCT+AGG	0.438969	8:-10717726	MsaT041694.1:CDS
TGAGTGCAAGTTCAAGAAAT+AGG	0.444135	8:-10718798	MsaT041694.1:CDS
ACTTTCTTTCCAGAAGCTAC+AGG	0.451806	8:-10717736	MsaT041694.1:CDS
TCTGTTCTTCTGCACCTCCC+TGG	0.454328	8:+10718445	None:intergenic
TTAATAGAGTATATGAGATC+TGG	0.465803	8:+10718691	None:intergenic
TAATCAACCTGTTGGAACTC+TGG	0.470845	8:+10717441	None:intergenic
CACCAAAGAACACAGATTCC+TGG	0.474579	8:-10717483	MsaT041694.1:CDS
CTCATGATGACAAGGACTAT+AGG	0.477649	8:-10718030	MsaT041694.1:intron
CAATACTTACTTGGTGGATG+AGG	0.492982	8:+10718631	None:intergenic
GCCATGGAAGAAGTAGAGAA+AGG	0.495080	8:+10718205	None:intergenic
ACCTGTTGGAACTCTGGAGT+TGG	0.501428	8:+10717447	None:intergenic
TCCAACTCCAGAGTTCCAAC+AGG	0.510080	8:-10717448	MsaT041694.1:intron
GTAGAGAAAGGGAAAGAAGA+AGG	0.511856	8:+10718217	None:intergenic
CCATGGAAGAAGTAGAGAAA+GGG	0.516371	8:+10718206	None:intergenic
TGATAAAGGAGGCAAGTTCA+AGG	0.519079	8:-10717787	MsaT041694.1:intron
GAGGCAAGTTCAAGGAATAA+GGG	0.523074	8:-10717779	MsaT041694.1:CDS
GTTCCACAGGCTTTCTTGAA+CGG	0.529120	8:+10718344	None:intergenic
TGTGAATGGTGCAGTTGGGT+GGG	0.535441	8:-10718509	MsaT041694.1:intron
TTCATCATTTCTTTGGTGAG+TGG	0.536164	8:-10717507	MsaT041694.1:CDS
GTTGGAAGCAAGATCTAGCC+AGG	0.536185	8:+10717465	None:intergenic
GTGAATGGTGCAGTTGGGTG+GGG	0.550789	8:-10718508	MsaT041694.1:intron
GAAAAGTAGACCCAGAGCCA+GGG	0.561252	8:-10718462	MsaT041694.1:CDS
TCACCAAAGAAATGATGAAG+TGG	0.571081	8:+10717511	None:intergenic
CTGTGAATGGTGCAGTTGGG+TGG	0.577092	8:-10718510	MsaT041694.1:intron
ATAGAGTATATGAGATCTGG+TGG	0.579210	8:+10718694	None:intergenic
GAAGAAACTACTAGTTCCAC+AGG	0.590035	8:+10718331	None:intergenic
CAAGAAATGGAGATGCTCAA+AGG	0.592887	8:-10718419	MsaT041694.1:CDS
TTGATTGAGAGTAATAGTAA+GGG	0.594306	8:+10718140	None:intergenic
GGGAGGTGCAGAAGAACAGA+TGG	0.600412	8:-10718442	MsaT041694.1:CDS
ATCTTATTCTCATGATGACA+AGG	0.605341	8:-10718038	MsaT041694.1:CDS
TGACTGATCATGACAAGCCA+TGG	0.611257	8:+10718189	None:intergenic
AGGAATAAGGGATGGTACTG+TGG	0.625865	8:-10717767	MsaT041694.1:CDS
CAAGTTCAAGGAATAAGGGA+TGG	0.642231	8:-10717775	MsaT041694.1:CDS
GCTGTTGTTGTTGTTCAAGG+AGG	0.650068	8:+10718252	None:intergenic
AAACCGTTCAAGAAAGCCTG+TGG	0.653157	8:-10718347	MsaT041694.1:CDS
AAGTAGACCCAGAGCCAGGG+AGG	0.659120	8:-10718459	MsaT041694.1:CDS
GTCAACAAGAACAACAAACA+AGG	0.662924	8:-10717560	MsaT041694.1:CDS
TGTGAAAGACACATGCACAG+AGG	0.772839	8:-10718373	MsaT041694.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	10717262	10718824	10717262	ID=MsaG041694
Chr8	mRNA	10717262	10718824	10717262	ID=MsaT041694.1;Parent=MsaG041694
Chr8	exon	10717262	10717269	10717262	ID=MsaT041694.1.exon4;Parent=MsaT041694.1
Chr8	CDS	10717262	10717269	10717262	ID=cds.MsaT041694.1;Parent=MsaT041694.1
Chr8	exon	10717449	10717801	10717449	ID=MsaT041694.1.exon3;Parent=MsaT041694.1
Chr8	CDS	10717449	10717801	10717449	ID=cds.MsaT041694.1;Parent=MsaT041694.1
Chr8	exon	10718031	10718517	10718031	ID=MsaT041694.1.exon2;Parent=MsaT041694.1
Chr8	CDS	10718031	10718517	10718031	ID=cds.MsaT041694.1;Parent=MsaT041694.1
Chr8	exon	10718641	10718824	10718641	ID=MsaT041694.1.exon1;Parent=MsaT041694.1
Chr8	CDS	10718641	10718824	10718641	ID=cds.MsaT041694.1;Parent=MsaT041694.1

Gene Sequence

>MsaT041694.1

ATGATGAGTGCAAGTTCAAGAAATAGGTCTCTTTTCACACCAAATCAATGGCAAGAACTTGAACAACAAGCCCTAGTTTTTAAATACATGGTTACTGGAACACCTATTCCACCAGATCTCATATACTCTATTAAGAGAAGTTTAGACACTTCAATATCTTCAAGAATCTTTCCTCATCCACCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCAAAGTACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTAGTAGTTTCTTCTTCAACAACAACACCAACAAATAACACAAACACAGCATCTTCTTACAACAGAAACACCTCCTTGAACAACAACAACAGCAGCATAAACTCACCTTCTTCTTTCCCTTTCTCTACTTCTTCCATGGCTTGTCATGATCAGTCACAATCTTTTTCACAATCCTACCAAAACCCTTACTATTACTCTCAATCAATTACCTCTTCTAAAACACTTGATCATTCTGATTTCCAAACTCAAGATGCTACTACTCATCACCTCTTTTTGGACTCAACATCTTATTCTCATGATGACAAGGACTATAGGAGGCAAGTTCAAGGAATAAGGGATGGTACTGTGGATGAGAGAACTTTCTTTCCAGAAGCTACAGGTTCATCTAGGAGCTGCTATCATGATTCATATCAACAACAACTATCAATGAATCCCTTTAAGTCTTACTCAAGCTCGCAGTTTGAAAATATCAATGATGATAATTCAAGACAACAACAAGAACAACACTGTTTTGTTTTAGGCACTGACATCAAGTCAACAAGAACAACAAACAAGGACAAAGAAAGTGAGACAACTCAGAAACCACTTCATCATTTCTTTGGTGAGTGGACACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAGTTCCAACAGATGAGTGA

Protein sequence

>MsaT041694.1

MMSASSRNRSLFTPNQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVELVVSSSTTTPTNNTNTASSYNRNTSLNNNNSSINSPSSFPFSTSSMACHDQSQSFSQSYQNPYYYSQSITSSKTLDHSDFQTQDATTHHLFLDSTSYSHDDKDYRRQVQGIRDGTVDERTFFPEATGSSRSCYHDSYQQQLSMNPFKSYSSSQFENINDDNSRQQQEQHCFVLGTDIKSTRTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRVPTDE*