AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG041708

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041708 MtrunA17_Chr8g0344101 97.653 554 13 0 1 554 53 606 0.0 1123
MsaG041708 MtrunA17_Chr5g0401131 30.864 405 237 12 165 548 108 490 1.17e-44 165
MsaG041708 MtrunA17_Chr2g0329591 26.964 471 279 15 111 548 13 451 1.54e-38 147
MsaG041708 MtrunA17_Chr5g0401421 26.636 428 250 12 169 547 33 445 6.48e-33 131
MsaG041708 MtrunA17_Chr4g0053901 27.586 435 245 13 164 547 52 467 8.20e-32 128
MsaG041708 MtrunA17_Chr2g0290241 24.874 398 253 14 169 548 56 425 1.70e-27 115
MsaG041708 MtrunA17_Chr1g0159461 25.377 398 257 14 166 548 220 592 4.45e-27 115
MsaG041708 MtrunA17_Chr3g0101141 26.000 400 246 15 169 548 173 542 2.90e-26 112
MsaG041708 MtrunA17_Chr3g0110971 24.623 398 251 9 172 549 220 588 2.38e-24 107
MsaG041708 MtrunA17_Chr8g0376381 24.936 389 246 12 172 549 170 523 3.42e-24 106
MsaG041708 MtrunA17_Chr4g0076091 25.124 402 246 15 169 547 173 542 2.00e-23 103
MsaG041708 MtrunA17_Chr5g0447691 25.871 402 244 15 169 548 175 544 3.12e-22 100
MsaG041708 MtrunA17_Chr5g0445331 24.439 401 255 14 169 548 159 532 8.55e-22 99.0
MsaG041708 MtrunA17_Chr7g0238891 24.779 452 276 16 130 548 320 740 9.58e-22 99.8
MsaG041708 MtrunA17_Chr4g0057891 24.641 418 265 13 153 548 131 520 2.09e-21 97.8
MsaG041708 MtrunA17_Chr2g0306641 24.874 398 246 12 170 548 124 487 5.68e-21 96.3
MsaG041708 MtrunA17_Chr3g0125811 23.383 402 266 15 163 548 195 570 9.74e-21 95.9
MsaG041708 MtrunA17_Chr7g0245601 24.289 387 244 11 175 548 442 792 1.06e-20 96.3
MsaG041708 MtrunA17_Chr4g0039661 25.745 369 249 10 185 548 207 555 6.70e-20 93.2
MsaG041708 MtrunA17_Chr7g0224271 23.762 404 254 12 170 548 299 673 1.41e-19 92.8
MsaG041708 MtrunA17_Chr2g0319091 25.441 397 250 15 169 547 210 578 1.32e-18 89.4
MsaG041708 MtrunA17_Chr2g0328411 24.505 404 247 14 171 551 289 657 4.77e-18 87.8
MsaG041708 MtrunA17_Chr2g0328391 24.873 394 241 15 160 524 288 655 1.87e-17 85.9
MsaG041708 MtrunA17_Chr1g0183641 24.570 407 255 13 156 547 107 476 4.00e-17 84.3
MsaG041708 MtrunA17_Chr2g0294461 20.050 399 282 9 168 549 208 586 5.52e-17 84.3
MsaG041708 MtrunA17_Chr4g0031721 23.849 478 301 16 103 547 236 683 7.42e-17 84.0
MsaG041708 MtrunA17_Chr8g0357601 22.169 415 275 13 155 549 167 553 6.85e-16 80.9
MsaG041708 MtrunA17_Chr3g0114841 24.205 409 271 12 160 547 109 499 7.59e-16 80.5
MsaG041708 MtrunA17_Chr2g0328431 22.506 431 276 14 139 547 259 653 3.15e-15 79.0
MsaG041708 MtrunA17_Chr2g0328341 24.260 507 313 18 69 547 174 637 9.45e-15 77.4
MsaG041708 MtrunA17_Chr4g0031711 23.834 386 235 13 171 524 361 719 9.65e-15 77.4
MsaG041708 MtrunA17_Chr4g0031701 25.505 396 236 16 171 539 254 617 1.53e-14 76.6
MsaG041708 MtrunA17_Chr2g0328401 23.301 412 248 15 144 526 263 635 1.70e-14 76.6
MsaG041708 MtrunA17_Chr4g0031731 24.742 388 229 15 171 524 254 612 2.39e-14 75.9
MsaG041708 MtrunA17_Chr2g0328381 24.566 403 241 15 171 547 275 640 2.42e-14 75.9
MsaG041708 MtrunA17_Chr5g0424131 22.588 425 302 11 144 554 94 505 3.21e-14 75.5
MsaG041708 MtrunA17_Chr4g0031741 23.604 394 256 13 171 547 284 649 4.16e-14 75.5
MsaG041708 MtrunA17_Chr1g0200401 22.794 408 259 13 170 548 79 459 7.54e-14 73.9
MsaG041708 MtrunA17_Chr2g0294471 20.388 412 272 11 163 549 197 577 1.42e-13 73.6
MsaG041708 MtrunA17_Chr4g0054071 36.937 111 66 2 167 274 129 238 6.04e-13 68.9
MsaG041708 MtrunA17_Chr4g0038851 23.947 451 259 16 165 551 42 472 6.21e-12 68.2
MsaG041708 MtrunA17_Chr7g0270031 21.053 399 280 12 162 549 181 555 8.43e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041708 AT3G13840.1 51.171 555 213 12 2 548 6 510 4.34e-178 512
MsaG041708 AT3G49950.1 30.713 407 237 11 164 547 23 407 9.25e-46 166
MsaG041708 AT4G37650.1 30.123 405 249 13 164 548 139 529 1.77e-43 162
MsaG041708 AT3G03450.1 27.390 387 248 10 172 549 184 546 6.83e-32 130
MsaG041708 AT5G17490.1 26.972 393 246 10 170 552 159 520 5.64e-29 121
MsaG041708 AT4G17230.1 25.879 398 249 14 169 548 156 525 5.01e-27 115
MsaG041708 AT4G17230.2 25.879 398 249 14 169 548 156 525 5.01e-27 115
MsaG041708 AT5G48150.1 26.010 396 246 13 172 548 123 490 1.17e-24 107
MsaG041708 AT5G48150.4 26.010 396 246 13 172 548 123 490 1.17e-24 107
MsaG041708 AT5G48150.2 26.010 396 246 13 172 548 123 490 1.17e-24 107
MsaG041708 AT5G48150.3 26.010 396 246 13 172 548 123 490 1.17e-24 107
MsaG041708 AT5G59450.1 25.180 556 320 22 39 548 93 598 6.68e-24 106
MsaG041708 AT1G14920.1 25.128 390 248 11 172 549 173 530 1.82e-23 104
MsaG041708 AT1G66350.1 25.128 390 246 12 172 551 156 509 1.90e-23 104
MsaG041708 AT5G66770.1 27.320 388 241 13 175 548 224 584 1.66e-22 102
MsaG041708 AT2G29065.1 24.936 393 262 8 171 547 252 627 6.90e-22 100
MsaG041708 AT2G01570.1 24.103 390 252 11 172 549 225 582 2.72e-21 98.2
MsaG041708 AT1G21450.1 24.557 395 259 15 169 548 223 593 3.08e-21 98.2
MsaG041708 AT1G50600.3 26.196 397 245 15 171 548 159 526 8.96e-20 93.2
MsaG041708 AT1G50600.1 26.055 403 238 14 171 548 230 597 1.12e-19 93.2
MsaG041708 AT1G50600.2 26.055 403 238 14 171 548 234 601 1.13e-19 93.2
MsaG041708 AT3G54220.1 24.936 389 240 12 175 547 297 649 1.30e-19 93.2
MsaG041708 AT3G50650.1 26.596 376 230 11 191 548 195 542 2.62e-19 91.7
MsaG041708 AT1G07520.1 23.762 505 325 13 79 547 212 692 3.34e-19 92.0
MsaG041708 AT1G07520.3 23.762 505 325 13 79 547 213 693 3.50e-19 92.0
MsaG041708 AT1G07520.2 23.762 505 325 13 79 547 48 528 4.23e-19 91.3
MsaG041708 AT1G07520.4 23.762 505 325 13 79 547 48 528 4.23e-19 91.3
MsaG041708 AT5G52510.1 26.316 323 197 10 249 548 336 640 3.08e-17 85.5
MsaG041708 AT5G41920.1 25.381 394 242 16 171 548 43 400 1.78e-16 82.0
MsaG041708 AT1G07530.1 25.058 431 275 16 137 547 362 764 3.12e-16 82.8
MsaG041708 AT1G50420.1 22.976 457 257 17 165 551 51 482 7.03e-16 80.9
MsaG041708 AT3G46600.1 24.228 421 231 16 171 552 212 583 2.02e-14 76.6
MsaG041708 AT3G46600.2 24.228 421 231 16 171 552 4 375 5.34e-14 74.3
MsaG041708 AT3G46600.3 24.228 421 231 16 171 552 180 551 5.34e-14 75.1
MsaG041708 AT1G55580.1 24.684 316 199 11 251 548 151 445 2.65e-13 72.8
MsaG041708 AT1G63100.1 22.760 413 247 18 171 547 252 628 1.42e-11 67.8
MsaG041708 AT1G63100.2 22.760 413 247 18 171 547 277 653 1.55e-11 67.4

Find 145 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCTTTCCATCATTCT+TGG 0.070532 8:+10843136 MsaT041708.1:CDS
TATCTGCAGATTGACATTTA+AGG 0.180511 8:-10844131 None:intergenic
CCAGATGGACCTACTGAAAA+TGG 0.187041 8:-10844070 None:intergenic
TCTTAAGTCTCTTGTTCTTT+TGG 0.246051 8:-10843415 None:intergenic
GGGTTTGCAGGGGAAGTATT+TGG 0.246526 8:+10844562 MsaT041708.1:CDS
CTGTTTCTTTCTGTTCTTTG+TGG 0.248275 8:+10844695 MsaT041708.1:CDS
AAAATGGGGTCTCCATATTT+TGG 0.254033 8:-10844054 None:intergenic
TTTCTGTTCTTTGTGGAAAC+TGG 0.270808 8:+10844702 MsaT041708.1:CDS
TCTGGTGATACTTTCTCTTC+TGG 0.283806 8:+10844088 MsaT041708.1:CDS
CATTGAAAATGACCAAAATA+TGG 0.300761 8:+10844042 MsaT041708.1:CDS
TGGATGTAACCATTGTTATA+TGG 0.301517 8:-10843164 None:intergenic
TGAACTGAGCACAGACAATA+AGG 0.307645 8:-10844222 None:intergenic
TTATTGTCTGTGCTCAGTTC+AGG 0.312907 8:+10844224 MsaT041708.1:CDS
ATTCAGATTTCCACCGGTTA+TGG 0.314217 8:-10843609 None:intergenic
AATTAGTATTGGCATCAATT+TGG 0.314452 8:-10843232 None:intergenic
TCACTTAATATTACCCCTTT+AGG 0.320054 8:-10844316 None:intergenic
CACGAAGAGTGGAGTACTTA+TGG 0.327317 8:+10844392 MsaT041708.1:CDS
TAAGGAAGTATGATAACAAT+TGG 0.334184 8:+10844617 MsaT041708.1:CDS
GGTACTGGTTACTTATATCT+TGG 0.359164 8:-10843211 None:intergenic
CACATTCTTGACTGGCTTGA+AGG 0.362157 8:+10843107 MsaT041708.1:CDS
ATGAAAGAAGCAGGGTTTGC+AGG 0.378552 8:+10844550 MsaT041708.1:CDS
CACAAAGAACAGAAAGAAAC+AGG 0.382192 8:-10844694 None:intergenic
AAGCCGGTGGTTGGCATCTC+CGG 0.385615 8:-10843678 None:intergenic
ATGACGAAGATGAAGATAAA+TGG 0.385639 8:-10843730 None:intergenic
ATTGTTACTGTTACTTCCAT+TGG 0.386351 8:-10843531 None:intergenic
GGGACGGTGGTTAGAAAATC+TGG 0.389102 8:+10843482 MsaT041708.1:CDS
ACTTTCTCTTCTGGACTCCT+TGG 0.394777 8:+10844097 MsaT041708.1:CDS
CCGATGAATGAAAGTGATAA+TGG 0.406397 8:+10843443 MsaT041708.1:CDS
TTTGGAGAGGATGCAATTGA+TGG 0.410953 8:+10844580 MsaT041708.1:CDS
ATGTGATCTGATGTTGGATT+TGG 0.414259 8:-10843089 None:intergenic
TCTTCGGCATTTCGTTTCTT+CGG 0.417116 8:-10843362 None:intergenic
AGAAACTCACTTCTTTCATC+AGG 0.418712 8:-10844271 None:intergenic
ATAGTACAAGTGTGGAACTA+TGG 0.422556 8:+10844659 MsaT041708.1:CDS
TTTCTTCGGCAAATCTGAAA+AGG 0.422754 8:-10843348 None:intergenic
CAGATGGACCTACTGAAAAT+GGG 0.424264 8:-10844069 None:intergenic
TTTGAGACTTAATTCATCTT+CGG 0.425894 8:-10843378 None:intergenic
GATTCCATATCTCATACTCT+TGG 0.427654 8:-10843184 None:intergenic
CCTTGTGCTGTAGCCATAAC+CGG 0.430036 8:+10843596 MsaT041708.1:CDS
GAAGCATTTGCTATGTTACT+AGG 0.433616 8:-10843851 None:intergenic
TCTTCGTCATCTACCCCATC+AGG 0.437019 8:+10843743 MsaT041708.1:CDS
GGTATGTTGTTAGAACTATT+AGG 0.437816 8:-10843326 None:intergenic
CAGTAACAATGGAAACAATA+AGG 0.442067 8:+10843544 MsaT041708.1:CDS
TGAGAGGCATGGAGCCTAAA+GGG 0.443623 8:+10844302 MsaT041708.1:CDS
AATGGAGATGCAGCTCTTGA+AGG 0.456048 8:+10843461 MsaT041708.1:CDS
TATTGGCATCAATTTGGTAC+TGG 0.457250 8:-10843226 None:intergenic
ATGGAGGTCGAGCTTTGTTA+AGG 0.458730 8:+10844599 MsaT041708.1:CDS
TGAAGGGTGCGCAAATTGTT+CGG 0.463218 8:-10843899 None:intergenic
AACCACCGGCTTGCAGCGCA+TGG 0.464860 8:+10843689 MsaT041708.1:CDS
CATCAGATCACATTCTTGAC+TGG 0.465424 8:+10843099 MsaT041708.1:CDS
CAGACAATAAGGGTTTCATC+AGG 0.467867 8:-10844211 None:intergenic
TGTGAAAGAATGAAAGAAGC+AGG 0.479878 8:+10844541 MsaT041708.1:CDS
CCATTATCACTTTCATTCAT+CGG 0.481330 8:-10843443 None:intergenic
GGCATTAGAAGAATTAGTAT+TGG 0.481797 8:-10843243 None:intergenic
ATTTGCTATGTTACTAGGAA+AGG 0.483089 8:-10843846 None:intergenic
CTCAAGGCCTCTAGAAAAGT+TGG 0.483348 8:-10843959 None:intergenic
AAGGAAGTATGATAACAATT+GGG 0.487490 8:+10844618 MsaT041708.1:CDS
ATGCGCTGCAAGCCGGTGGT+TGG 0.488488 8:-10843687 None:intergenic
TGATGTTGGATTTGGTTCCA+TGG 0.491247 8:-10843081 None:intergenic
CTTGACATTGGAGTCTCTCA+TGG 0.497221 8:+10843926 MsaT041708.1:CDS
TGAAAGAAGCAGGGTTTGCA+GGG 0.503859 8:+10844551 MsaT041708.1:CDS
ACATCCAAGAGTATGAGATA+TGG 0.506767 8:+10843180 MsaT041708.1:CDS
TATGGATCATCCAAGAATGA+TGG 0.507403 8:-10843146 None:intergenic
TTCAGCTAGAACTTGAAGAA+TGG 0.511790 8:-10843873 None:intergenic
TTCTCCTTTCATCACTGTCA+CGG 0.512017 8:-10844450 None:intergenic
TTCTTCGGCAAATCTGAAAA+GGG 0.512552 8:-10843347 None:intergenic
AATGTTAGTTGTGCTGTTTG+TGG 0.520846 8:-10843264 None:intergenic
GAAGACCATGCGCTGCAAGC+CGG 0.522939 8:-10843694 None:intergenic
TTAGCATTCAATGTCTGCAA+TGG 0.523978 8:-10844172 None:intergenic
TCCACCAGGTCGACGACTCA+AGG 0.527743 8:-10843975 None:intergenic
CTCCAATGTCAAGGATGTGA+AGG 0.528283 8:-10843916 None:intergenic
CAAAAGTTATAGTCCCTGAT+GGG 0.531586 8:-10843757 None:intergenic
ATGGAGATGCAGCTCTTGAA+GGG 0.536419 8:+10843462 MsaT041708.1:CDS
TTGAGAGGCATGGAGCCTAA+AGG 0.536843 8:+10844301 MsaT041708.1:CDS
CCGGTTATGGCTACAGCACA+AGG 0.536994 8:-10843596 None:intergenic
CACACGATTCAGATTTCCAC+CGG 0.537218 8:-10843615 None:intergenic
AAATCTGGTGGGAACAAGAA+AGG 0.541486 8:+10843497 MsaT041708.1:CDS
GACAATAAGGGTTTCATCAG+GGG 0.542576 8:-10844209 None:intergenic
TGTTAGAACTATTAGGCTCA+AGG 0.546508 8:-10843319 None:intergenic
TCCTTTCGTTCATTTCACGC+TGG 0.552507 8:-10844507 None:intergenic
GAACAAGAAAGGTGCAGCTA+AGG 0.556763 8:+10843508 MsaT041708.1:CDS
AAGAGGCATTAACGACAGTA+AGG 0.559463 8:-10844015 None:intergenic
CACTCTTCGTGAGAATCCGT+TGG 0.559554 8:-10844380 None:intergenic
CATGAGCTAGCCTCAACTAC+CGG 0.561483 8:+10843659 MsaT041708.1:CDS
ACAAGAGGAGGAGGTCCACC+AGG 0.563233 8:-10843989 None:intergenic
CAGTGATGAAAGGAGAATGA+TGG 0.563415 8:+10844456 MsaT041708.1:CDS
TCTGAAGGTGTTGAGAGGCA+TGG 0.564144 8:+10844291 MsaT041708.1:CDS
ATGTTGAGCTTGAACTACTC+TGG 0.564625 8:-10844733 None:intergenic
ATGGAAACAATAAGGATGGT+AGG 0.566559 8:+10843552 MsaT041708.1:CDS
CTCAAGGGATGTTATACTTG+TGG 0.567441 8:-10843303 None:intergenic
AACAATGGAAACAATAAGGA+TGG 0.567730 8:+10843548 MsaT041708.1:CDS
AATGGAAGTAACAGTAACAA+TGG 0.568724 8:+10843533 MsaT041708.1:CDS
GCAAAAGTTATAGTCCCTGA+TGG 0.570125 8:-10843758 None:intergenic
TGCAGGGGAAGTATTTGGAG+AGG 0.571772 8:+10844567 MsaT041708.1:CDS
GACCATGCGCTGCAAGCCGG+TGG 0.571829 8:-10843691 None:intergenic
GTTAGAACTATTAGGCTCAA+GGG 0.573060 8:-10843318 None:intergenic
GTAAGGCGAACAAGAGGAGG+AGG 0.573398 8:-10843998 None:intergenic
GAACTGAGCACAGACAATAA+GGG 0.574095 8:-10844221 None:intergenic
AAAGGTGCAGCTAAGGCCAA+TGG 0.579176 8:+10843515 MsaT041708.1:CDS
GAGGCCTTGAGTCGTCGACC+TGG 0.583244 8:+10843971 MsaT041708.1:CDS
GTTGGCATCTCCGGTAGTTG+AGG 0.586159 8:-10843669 None:intergenic
AGTTCTACGAGGTTAGCCCT+TGG 0.589690 8:+10843819 MsaT041708.1:CDS
CAACGGATTCTCACGAAGAG+TGG 0.590408 8:+10844381 MsaT041708.1:CDS
ACCCTTCACATCCTTGACAT+TGG 0.592655 8:+10843914 MsaT041708.1:CDS
CTACCGGAGATGCCAACCAC+CGG 0.595926 8:+10843675 MsaT041708.1:CDS
AGACAATAAGGGTTTCATCA+GGG 0.596272 8:-10844210 None:intergenic
ACAGTAAGGCGAACAAGAGG+AGG 0.598078 8:-10844001 None:intergenic
AGAAGAAAATAGTACAAGTG+TGG 0.598352 8:+10844651 MsaT041708.1:CDS
GAGTTTCTGAAGGTGTTGAG+AGG 0.604609 8:+10844286 MsaT041708.1:CDS
TTGGATGATCCATATAACAA+TGG 0.604773 8:+10843155 MsaT041708.1:CDS
GAGTGTTGTTGCAGTAGTTG+TGG 0.605351 8:+10844349 MsaT041708.1:CDS
AAAACCGTGACAGTGATGAA+AGG 0.606029 8:+10844446 MsaT041708.1:CDS
TCAAGAATGTGATCTGATGT+TGG 0.611351 8:-10843095 None:intergenic
AGATGCAGCTCTTGAAGGGA+CGG 0.612821 8:+10843466 MsaT041708.1:CDS
AAACAATAAGGATGGTAGGT+GGG 0.614807 8:+10843556 MsaT041708.1:CDS
GCCTTGAGTCGTCGACCTGG+TGG 0.619448 8:+10843974 MsaT041708.1:CDS
GTACAAGTGTGGAACTATGG+TGG 0.621371 8:+10844662 MsaT041708.1:CDS
ACCAGCGTGAAATGAACGAA+AGG 0.622182 8:+10844506 MsaT041708.1:CDS
CTTCGTCATCTACCCCATCA+GGG 0.622872 8:+10843744 MsaT041708.1:CDS
AAGAACAGAAAGAAACAGGT+TGG 0.623585 8:-10844690 None:intergenic
GTGAAAGAATGAAAGAAGCA+GGG 0.627954 8:+10844542 MsaT041708.1:CDS
TCCAATGTCAAGGATGTGAA+GGG 0.631798 8:-10843915 None:intergenic
GAAGAGAAAGTATCACCAGA+TGG 0.632861 8:-10844085 None:intergenic
GAAACAATAAGGATGGTAGG+TGG 0.634500 8:+10843555 MsaT041708.1:CDS
GGAGAGGATGCAATTGATGG+AGG 0.634715 8:+10844583 MsaT041708.1:CDS
GAGTCTCTCATGGTGTGCAA+TGG 0.634794 8:+10843936 MsaT041708.1:CDS
CATGAGAGACTCCAATGTCA+AGG 0.642013 8:-10843925 None:intergenic
GAGAGGCATGGAGCCTAAAG+GGG 0.644363 8:+10844303 MsaT041708.1:CDS
TTACTAGGAAAGGAAAACCA+AGG 0.646391 8:-10843836 None:intergenic
TACTAGGAAAGGAAAACCAA+GGG 0.646959 8:-10843835 None:intergenic
ACGACAGTAAGGCGAACAAG+AGG 0.653539 8:-10844004 None:intergenic
AAGGAGAATGATGGAAGGTG+AGG 0.653865 8:+10844465 MsaT041708.1:CDS
TTAAGGATTGAGCATAACCA+AGG 0.659329 8:-10844114 None:intergenic
AGATGGACCTACTGAAAATG+GGG 0.663709 8:-10844068 None:intergenic
AATATTAAGTGAGAACAACA+TGG 0.666720 8:+10844327 MsaT041708.1:CDS
TGAAAGAAGTGAGTTTCTGA+AGG 0.676073 8:+10844276 MsaT041708.1:CDS
TGCAGCTCTTGAAGGGACGG+TGG 0.681085 8:+10843469 MsaT041708.1:CDS
TGTGCTGTAGCCATAACCGG+TGG 0.681250 8:+10843599 MsaT041708.1:CDS
GATGAAAGGAGAATGATGGA+AGG 0.683629 8:+10844460 MsaT041708.1:CDS
GAAAGAAGCAGGGTTTGCAG+GGG 0.689170 8:+10844552 MsaT041708.1:CDS
AAAAGTTATAGTCCCTGATG+GGG 0.695486 8:-10843756 None:intergenic
ACGGTGGTTAGAAAATCTGG+TGG 0.698436 8:+10843485 MsaT041708.1:CDS
GAAGAGTGGAGTACTTATGG+AGG 0.701033 8:+10844395 MsaT041708.1:CDS
CGGTGGTTAGAAAATCTGGT+GGG 0.703407 8:+10843486 MsaT041708.1:CDS
CGGTTATGGCTACAGCACAA+GGG 0.712194 8:-10843595 None:intergenic
ATCATTACTGAAGTTCTACG+AGG 0.730047 8:+10843808 MsaT041708.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 10843077 10844741 10843077 ID=MsaG041708
Chr8 mRNA 10843077 10844741 10843077 ID=MsaT041708.1;Parent=MsaG041708
Chr8 exon 10843077 10844741 10843077 ID=MsaT041708.1.exon1;Parent=MsaT041708.1
Chr8 CDS 10843077 10844741 10843077 ID=cds.MsaT041708.1;Parent=MsaT041708.1
Gene Sequence

>MsaT041708.1

ATGACCATGGAACCAAATCCAACATCAGATCACATTCTTGACTGGCTTGAAGGTTCTGTCTCTTTCTTTCCATCATTCTTGGATGATCCATATAACAATGGTTACATCCAAGAGTATGAGATATGGAATCAGAACCAAGATATAAGTAACCAGTACCAAATTGATGCCAATACTAATTCTTCTAATGCCACAAACAGCACAACTAACATTGTTGCTGCTAGTACTACCACAAGTATAACATCCCTTGAGCCTAATAGTTCTAACAACATACCCTTTTCAGATTTGCCGAAGAAACGAAATGCCGAAGATGAATTAAGTCTCAAAAAACAGCCACAAAACCAAAAGAACAAGAGACTTAAGAGTCGTCCGATGAATGAAAGTGATAATGGAGATGCAGCTCTTGAAGGGACGGTGGTTAGAAAATCTGGTGGGAACAAGAAAGGTGCAGCTAAGGCCAATGGAAGTAACAGTAACAATGGAAACAATAAGGATGGTAGGTGGGCTGAGCAGTTGCTCAACCCTTGTGCTGTAGCCATAACCGGTGGAAATCTGAATCGTGTGCAACATCTCTTATATGTTCTACATGAGCTAGCCTCAACTACCGGAGATGCCAACCACCGGCTTGCAGCGCATGGTCTTCGAGCATTGACACACCATTTATCTTCATCTTCGTCATCTACCCCATCAGGGACTATAACTTTTGCATCTACAGAACCGCGATTCTTCCAAAAATCATTACTGAAGTTCTACGAGGTTAGCCCTTGGTTTTCCTTTCCTAGTAACATAGCAAATGCTTCCATTCTTCAAGTTCTAGCTGAAGAGCCGAACAATTTGCGCACCCTTCACATCCTTGACATTGGAGTCTCTCATGGTGTGCAATGGCCAACTTTTCTAGAGGCCTTGAGTCGTCGACCTGGTGGACCTCCTCCTCTTGTTCGCCTTACTGTCGTTAATGCCTCTTCATCCATTGAAAATGACCAAAATATGGAGACCCCATTTTCAGTAGGTCCATCTGGTGATACTTTCTCTTCTGGACTCCTTGGTTATGCTCAATCCTTAAATGTCAATCTGCAGATAAAAAAGCTTGATAATCATCCATTGCAGACATTGAATGCTAAAAGTGTTGACACATCCCCTGATGAAACCCTTATTGTCTGTGCTCAGTTCAGGTTGCATCACTTGAATCATAACAGTCCTGATGAAAGAAGTGAGTTTCTGAAGGTGTTGAGAGGCATGGAGCCTAAAGGGGTAATATTAAGTGAGAACAACATGGAGTGTTGTTGCAGTAGTTGTGGCGATTTTGCCAACGGATTCTCACGAAGAGTGGAGTACTTATGGAGGTTTTTAGATTCAACCAGTTCGGCATTCAAAAACCGTGACAGTGATGAAAGGAGAATGATGGAAGGTGAGGCTGCAAAAGCATTGACAAACCAGCGTGAAATGAACGAAAGGAGAGAAAAATGGTGTGAAAGAATGAAAGAAGCAGGGTTTGCAGGGGAAGTATTTGGAGAGGATGCAATTGATGGAGGTCGAGCTTTGTTAAGGAAGTATGATAACAATTGGGAGATGAAAGTAGAAGAAAATAGTACAAGTGTGGAACTATGGTGGAAGAGCCAACCTGTTTCTTTCTGTTCTTTGTGGAAACTGGAGAAACAACCAGAGTAG
Protein sequence

>MsaT041708.1

MTMEPNPTSDHILDWLEGSVSFFPSFLDDPYNNGYIQEYEIWNQNQDISNQYQIDANTNSSNATNSTTNIVAASTTTSITSLEPNSSNNIPFSDLPKKRNAEDELSLKKQPQNQKNKRLKSRPMNESDNGDAALEGTVVRKSGGNKKGAAKANGSNSNNGNNKDGRWAEQLLNPCAVAITGGNLNRVQHLLYVLHELASTTGDANHRLAAHGLRALTHHLSSSSSSTPSGTITFASTEPRFFQKSLLKFYEVSPWFSFPSNIANASILQVLAEEPNNLRTLHILDIGVSHGVQWPTFLEALSRRPGGPPPLVRLTVVNASSSIENDQNMETPFSVGPSGDTFSSGLLGYAQSLNVNLQIKKLDNHPLQTLNAKSVDTSPDETLIVCAQFRLHHLNHNSPDERSEFLKVLRGMEPKGVILSENNMECCCSSCGDFANGFSRRVEYLWRFLDSTSSAFKNRDSDERRMMEGEAAKALTNQREMNERREKWCERMKEAGFAGEVFGEDAIDGGRALLRKYDNNWEMKVEENSTSVELWWKSQPVSFCSLWKLEKQPE*