Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG041766 | XP_003627372.1 | 95.166 | 331 | 12 | 2 | 1 | 330 | 1 | 328 | 0.0 | 553 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG041766 | sp|Q9LJG8|ASIL2_ARATH | 47.396 | 384 | 110 | 11 | 34 | 330 | 24 | 402 | 2.54e-88 | 277 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG041766 | tr|G7L8C7|G7L8C7_MEDTR | 95.166 | 331 | 12 | 2 | 1 | 330 | 1 | 328 | 0.0 | 553 |
Gene ID | Type | Classification |
---|---|---|
MsaG041766 | TF | Trihelix |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000372 | MsaG041766 | 0.817664 | 5.107125e-52 | 1.056741e-49 |
MsaG002121 | MsaG041766 | 0.806430 | 1.399770e-49 | 2.194589e-47 |
MsaG004189 | MsaG041766 | 0.811077 | 1.437011e-50 | 2.519361e-48 |
MsaG006481 | MsaG041766 | 0.809246 | 3.549008e-50 | 5.951243e-48 |
MsaG010660 | MsaG041766 | 0.820056 | 1.469638e-52 | 3.237132e-50 |
MsaG011289 | MsaG041766 | 0.801915 | 1.206042e-48 | 1.702842e-46 |
MsaG013182 | MsaG041766 | 0.800988 | 1.863866e-48 | 2.576854e-46 |
MsaG013417 | MsaG041766 | 0.827872 | 2.199219e-54 | 5.992519e-52 |
MsaG015114 | MsaG041766 | 0.811185 | 1.361396e-50 | 2.393157e-48 |
MsaG018355 | MsaG041766 | 0.809280 | 3.491449e-50 | 5.859406e-48 |
MsaG019430 | MsaG041766 | 0.804698 | 3.218286e-49 | 4.844988e-47 |
MsaG021085 | MsaG041766 | 0.818849 | 2.761141e-52 | 5.891542e-50 |
MsaG022805 | MsaG041766 | 0.845508 | 7.296877e-59 | 3.399873e-56 |
MsaG023134 | MsaG041766 | 0.811672 | 1.068402e-50 | 1.900638e-48 |
MsaG028490 | MsaG041766 | 0.806521 | 1.339441e-49 | 2.104459e-47 |
MsaG031693 | MsaG041766 | 0.810316 | 2.095357e-50 | 3.605945e-48 |
MsaG033246 | MsaG041766 | 0.804240 | 4.005610e-49 | 5.966832e-47 |
MsaG035634 | MsaG041766 | 0.813848 | 3.586380e-51 | 6.735145e-49 |
MsaG035666 | MsaG041766 | 0.824274 | 1.561541e-53 | 3.850963e-51 |
MsaG037247 | MsaG041766 | 0.810220 | 2.197090e-50 | 3.772071e-48 |
MsaG039692 | MsaG041766 | 0.839258 | 3.252312e-57 | 1.240406e-54 |
MsaG041347 | MsaG041766 | 0.815095 | 1.906334e-51 | 3.693905e-49 |
MsaG041599 | MsaG041766 | 0.826396 | 4.942716e-54 | 1.292368e-51 |
MsaG041766 | MsaG045263 | 0.809705 | 2.832392e-50 | 4.802548e-48 |
MsaG041766 | MsaG045286 | 0.813462 | 4.358885e-51 | 8.106682e-49 |
MsaG041766 | MsaG045314 | 0.801265 | 1.636909e-48 | 2.277246e-46 |
MsaG041766 | MsaG046441 | 0.809068 | 3.874232e-50 | 6.469071e-48 |
MsaG041766 | MsaG046920 | 0.802369 | 9.737036e-49 | 1.389147e-46 |
MsaG041766 | MsaG008905 | 0.801476 | 1.482033e-48 | 2.071742e-46 |
MsaG041766 | MsaG020224 | 0.811342 | 1.259167e-50 | 2.221983e-48 |
MsaG041766 | MsaG036648 | 0.812978 | 5.558908e-51 | 1.021417e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG041766 | MtrunA17_Chr8g0344681 | 95.166 | 331 | 12 | 2 | 1 | 330 | 1 | 328 | 0.0 | 553 |
MsaG041766 | MtrunA17_Chr2g0283871 | 59.804 | 102 | 37 | 2 | 66 | 166 | 19 | 117 | 1.01e-35 | 133 |
MsaG041766 | MtrunA17_Chr2g0283871 | 53.030 | 66 | 28 | 1 | 265 | 330 | 236 | 298 | 8.28e-15 | 74.7 |
MsaG041766 | MtrunA17_Chr4g0041151 | 57.391 | 115 | 35 | 4 | 65 | 171 | 26 | 134 | 8.35e-34 | 127 |
MsaG041766 | MtrunA17_Chr2g0331931 | 30.418 | 263 | 131 | 8 | 70 | 330 | 274 | 486 | 3.73e-22 | 98.2 |
MsaG041766 | MtrunA17_Chr2g0325841 | 39.450 | 109 | 58 | 3 | 67 | 171 | 43 | 147 | 2.64e-17 | 84.3 |
MsaG041766 | MtrunA17_Chr3g0082261 | 26.299 | 308 | 162 | 12 | 54 | 330 | 21 | 294 | 4.14e-17 | 81.6 |
MsaG041766 | MtrunA17_Chr6g0485241 | 36.000 | 100 | 59 | 2 | 70 | 169 | 130 | 224 | 2.09e-16 | 80.1 |
MsaG041766 | MtrunA17_Chr1g0164461 | 36.066 | 122 | 68 | 2 | 54 | 174 | 21 | 133 | 6.10e-15 | 72.8 |
MsaG041766 | MtrunA17_Chr1g0179531 | 34.375 | 96 | 57 | 2 | 70 | 165 | 133 | 222 | 9.25e-15 | 75.9 |
MsaG041766 | MtrunA17_Chr4g0066271 | 32.632 | 95 | 62 | 1 | 69 | 163 | 116 | 208 | 1.84e-13 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG041766 | AT3G14180.1 | 47.396 | 384 | 110 | 11 | 34 | 330 | 24 | 402 | 2.58e-89 | 277 |
MsaG041766 | AT1G54060.1 | 41.176 | 374 | 147 | 13 | 1 | 330 | 1 | 345 | 6.74e-53 | 181 |
MsaG041766 | AT5G05550.3 | 39.552 | 268 | 102 | 7 | 65 | 330 | 19 | 228 | 1.74e-43 | 152 |
MsaG041766 | AT5G05550.1 | 39.552 | 268 | 102 | 7 | 65 | 330 | 19 | 228 | 2.34e-43 | 151 |
MsaG041766 | AT5G05550.2 | 39.552 | 268 | 102 | 7 | 65 | 330 | 19 | 228 | 2.79e-43 | 151 |
MsaG041766 | AT3G58630.2 | 37.143 | 280 | 146 | 8 | 66 | 329 | 22 | 287 | 4.88e-43 | 152 |
MsaG041766 | AT3G58630.1 | 37.143 | 280 | 146 | 8 | 66 | 329 | 22 | 287 | 6.09e-43 | 152 |
MsaG041766 | AT3G11100.1 | 41.852 | 270 | 98 | 7 | 65 | 330 | 17 | 231 | 7.44e-43 | 150 |
MsaG041766 | AT3G10030.2 | 36.283 | 113 | 66 | 2 | 70 | 182 | 161 | 267 | 8.25e-18 | 85.5 |
MsaG041766 | AT3G10030.1 | 36.283 | 113 | 66 | 2 | 70 | 182 | 161 | 267 | 1.07e-17 | 85.1 |
MsaG041766 | AT3G24490.1 | 33.846 | 130 | 76 | 4 | 70 | 197 | 90 | 211 | 7.79e-17 | 81.3 |
MsaG041766 | AT3G54390.1 | 40.404 | 99 | 50 | 2 | 66 | 164 | 34 | 123 | 1.33e-16 | 80.1 |
MsaG041766 | AT3G54390.2 | 40.404 | 99 | 50 | 2 | 66 | 164 | 50 | 139 | 1.50e-16 | 80.1 |
MsaG041766 | AT2G44730.1 | 32.632 | 95 | 62 | 1 | 69 | 163 | 63 | 155 | 3.49e-12 | 67.8 |
MsaG041766 | AT3G24860.1 | 28.800 | 125 | 67 | 3 | 39 | 163 | 45 | 147 | 1.02e-11 | 65.9 |
Find 111 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCAGGTACGGCTGCAGTTT+GGG | 0.185680 | 8:+11568012 | None:intergenic |
ACTCAGGCAATTGTGAAATT+TGG | 0.238839 | 8:-11569376 | MsaT041766.1:CDS |
ATAGCTATGGGACTGAATTT+TGG | 0.267179 | 8:+11568093 | None:intergenic |
GATGAAGTTTGCTAAGGATT+TGG | 0.272524 | 8:-11569290 | MsaT041766.1:CDS |
GATCGGTTAGATCAGTTAAT+TGG | 0.279898 | 8:-11569748 | MsaT041766.1:CDS |
GCCAAGATTAGTGGTGTTTC+CGG | 0.285327 | 8:-11569718 | MsaT041766.1:CDS |
AGGCAGGTACGGCTGCAGTT+TGG | 0.318815 | 8:+11568011 | None:intergenic |
TTCGGTGACGGTTGCGGCAC+CGG | 0.338241 | 8:-11570112 | MsaT041766.1:CDS |
GAGGTTGCGGAGATTGTTAA+TGG | 0.341472 | 8:-11569919 | MsaT041766.1:CDS |
TCCATCTCCGGTGTCGTCTC+CGG | 0.352746 | 8:-11570151 | MsaT041766.1:CDS |
AAATTCGAAGGGGAGAGGTT+GGG | 0.373866 | 8:-11569419 | MsaT041766.1:CDS |
CCTGTTGGTATTCGCGCCTC+TGG | 0.397120 | 8:-11569640 | MsaT041766.1:CDS |
GTTTCACGTCCCAGCGGTGC+TGG | 0.399693 | 8:+11567924 | None:intergenic |
GTGGAGGGAGGGAGGATTGT+TGG | 0.405449 | 8:-11570032 | MsaT041766.1:CDS |
CCATCTCCGGTGTCGTCTCC+GGG | 0.410853 | 8:-11570150 | MsaT041766.1:CDS |
AGCGTGGGGAGAGAGGTATT+TGG | 0.415050 | 8:-11569980 | MsaT041766.1:CDS |
AAAACAGCCGCAACAGCTGC+TGG | 0.415089 | 8:-11567987 | MsaT041766.1:CDS |
AATTCGAAGGGGAGAGGTTG+GGG | 0.424508 | 8:-11569418 | MsaT041766.1:CDS |
GGGAGCGATCGGTAGGATTT+CGG | 0.429065 | 8:-11570130 | MsaT041766.1:CDS |
ACCGGAAACACCACTAATCT+TGG | 0.441082 | 8:+11569717 | None:intergenic |
GGCGGTGTTGATTGAAGCGT+GGG | 0.449332 | 8:-11569995 | MsaT041766.1:CDS |
AATGCATAGCTGTTCGCCGC+CGG | 0.453869 | 8:+11570093 | None:intergenic |
GAGGTTGGGGAAGTGCGGTG+AGG | 0.461820 | 8:-11569405 | MsaT041766.1:CDS |
AGGTTGGGGAAGTGCGGTGA+GGG | 0.465619 | 8:-11569404 | MsaT041766.1:CDS |
ATCATAAAACCGCCAAGTGC+TGG | 0.468333 | 8:+11569768 | None:intergenic |
GTTTCCGGTACCAGTCATAC+TGG | 0.474144 | 8:-11569703 | MsaT041766.1:CDS |
ATCGGTGCTGAAGGTGGCTC+CGG | 0.475507 | 8:-11569802 | MsaT041766.1:CDS |
TAGGATTTCGGTGACGGTTG+CGG | 0.476805 | 8:-11570118 | MsaT041766.1:CDS |
GTCGAAGTTGCAGCAGGTGG+TGG | 0.476922 | 8:-11569329 | MsaT041766.1:CDS |
CAAATTCGAAGGGGAGAGGT+TGG | 0.478124 | 8:-11569420 | MsaT041766.1:CDS |
GCGGAGATTGTTAATGGAAG+AGG | 0.480346 | 8:-11569913 | MsaT041766.1:CDS |
CTGATATTCAGTGTAAGAAT+CGG | 0.482219 | 8:-11569867 | MsaT041766.1:CDS |
GGTCCAGCTGCCAAGATTAG+TGG | 0.484802 | 8:-11569727 | MsaT041766.1:CDS |
CCAGAGGCGCGAATACCAAC+AGG | 0.485804 | 8:+11569640 | None:intergenic |
GGCGAGTGGTTCTCCATCTC+CGG | 0.489845 | 8:-11570163 | MsaT041766.1:CDS |
GGTTAAGAAGAAGTATAAAT+CGG | 0.490848 | 8:-11569836 | MsaT041766.1:CDS |
GGAATTTGAAGCAGAAGCAT+TGG | 0.493242 | 8:-11569945 | MsaT041766.1:CDS |
ACCTTCGCTCTCTTCCTCTC+CGG | 0.494047 | 8:+11569451 | None:intergenic |
GTTGCAGCAGGTGGTGGAGA+TGG | 0.496264 | 8:-11569323 | MsaT041766.1:CDS |
GCTCTCTTCCTCTCCGGTGG+TGG | 0.502946 | 8:+11569457 | None:intergenic |
CCACGTGTCGTATTCTGAAT+CGG | 0.509196 | 8:+11570063 | None:intergenic |
TGGAAGCAACGGTGGAGGGA+GGG | 0.519025 | 8:-11570043 | MsaT041766.1:CDS |
GTGTCGTCTCCGGGAGCGAT+CGG | 0.520173 | 8:-11570141 | MsaT041766.1:CDS |
GGTATTTGGAATTGAGCAGA+GGG | 0.520971 | 8:-11569966 | MsaT041766.1:CDS |
GAAGCATTGGAAAGAGGTTG+CGG | 0.521472 | 8:-11569932 | MsaT041766.1:CDS |
GATCGGTAGGATTTCGGTGA+CGG | 0.523152 | 8:-11570124 | MsaT041766.1:CDS |
GGAGAACCACTCGCCGGAGA+TGG | 0.523745 | 8:+11570171 | None:intergenic |
GAAGCAGAAGCATTGGAAAG+AGG | 0.525294 | 8:-11569938 | MsaT041766.1:CDS |
AATTCAAATTCGAAGGGGAG+AGG | 0.527517 | 8:-11569424 | MsaT041766.1:CDS |
CCCGGAGACGACACCGGAGA+TGG | 0.529470 | 8:+11570150 | None:intergenic |
TCACAGCAGAAAGTTCCGTT+AGG | 0.530119 | 8:-11569667 | MsaT041766.1:CDS |
GCAGAGGATGAAGTTTGCTA+AGG | 0.530659 | 8:-11569296 | MsaT041766.1:CDS |
GGTGATGAATTCAAATTCGA+AGG | 0.540299 | 8:-11569431 | MsaT041766.1:CDS |
ACACCACTAATCTTGGCAGC+TGG | 0.541940 | 8:+11569724 | None:intergenic |
GAAATCCTACCGATCGCTCC+CGG | 0.544759 | 8:+11570132 | None:intergenic |
GGATGCTTGAGGCATAGCTA+TGG | 0.545553 | 8:+11568080 | None:intergenic |
GTGGAAGCAACGGTGGAGGG+AGG | 0.547610 | 8:-11570044 | MsaT041766.1:CDS |
CACGTGGAAGCAACGGTGGA+GGG | 0.548507 | 8:-11570047 | MsaT041766.1:CDS |
GTGTAAGAATCGGATTGATA+CGG | 0.548630 | 8:-11569857 | MsaT041766.1:CDS |
ATGACTGTTTCCAGTATGAC+TGG | 0.550475 | 8:+11569693 | None:intergenic |
GGAGACGTCGAAGTTGCAGC+AGG | 0.559673 | 8:-11569335 | MsaT041766.1:CDS |
TGCGGTGAGGGAATTGACTC+AGG | 0.559802 | 8:-11569392 | MsaT041766.1:CDS |
GCAGGTACGGCTGCAGTTTG+GGG | 0.560060 | 8:+11568013 | None:intergenic |
TGATAGTCCAGCAGCTGTTG+CGG | 0.560612 | 8:+11567980 | None:intergenic |
AATACGACACGTGGAAGCAA+CGG | 0.563694 | 8:-11570054 | MsaT041766.1:CDS |
AGGTATTTGGAATTGAGCAG+AGG | 0.565655 | 8:-11569967 | MsaT041766.1:CDS |
TGGTGGAGATGGAGAAGCAG+AGG | 0.566345 | 8:-11569312 | MsaT041766.1:CDS |
TGATTGAAGCGTGGGGAGAG+AGG | 0.567107 | 8:-11569987 | MsaT041766.1:CDS |
GGGGAGAGGTTGGGGAAGTG+CGG | 0.570094 | 8:-11569410 | MsaT041766.1:CDS |
GTGTTACAACCAGCACTTGG+CGG | 0.570584 | 8:-11569777 | MsaT041766.1:CDS |
CGGCGGTGTTGATTGAAGCG+TGG | 0.570892 | 8:-11569996 | MsaT041766.1:CDS |
GACGTCGAAGTTGCAGCAGG+TGG | 0.576057 | 8:-11569332 | MsaT041766.1:CDS |
AAAGCTAAGATCGGTGCTGA+AGG | 0.576418 | 8:-11569811 | MsaT041766.1:CDS |
GGTGCTGAAGGTGGCTCCGG+CGG | 0.576938 | 8:-11569799 | MsaT041766.1:CDS |
ACACGTGGAAGCAACGGTGG+AGG | 0.578608 | 8:-11570048 | MsaT041766.1:CDS |
GTTTCCAGTATGACTGGTAC+CGG | 0.580255 | 8:+11569699 | None:intergenic |
GTGATGAATTCAAATTCGAA+GGG | 0.583321 | 8:-11569430 | MsaT041766.1:CDS |
ATCGCTCCCGGAGACGACAC+CGG | 0.585960 | 8:+11570144 | None:intergenic |
TTCGCTCTCTTCCTCTCCGG+TGG | 0.586645 | 8:+11569454 | None:intergenic |
GCTATTGCTTGGGATGCTTG+AGG | 0.588655 | 8:+11568069 | None:intergenic |
AGTGCTGGTTGTAACACCGC+CGG | 0.591035 | 8:+11569783 | None:intergenic |
GCGGTGTTACAACCAGCACT+TGG | 0.592137 | 8:-11569780 | MsaT041766.1:CDS |
TTGTTGGAGCGAAGCAGCGA+CGG | 0.593492 | 8:-11570016 | MsaT041766.1:CDS |
AAGCGACAGTTTACCACCAC+CGG | 0.595248 | 8:-11569470 | MsaT041766.1:CDS |
AAGCAACGGTGGAGGGAGGG+AGG | 0.596019 | 8:-11570040 | MsaT041766.1:CDS |
GATCCACTCGAATCCATCTC+CGG | 0.596077 | 8:-11570184 | MsaT041766.1:CDS |
GATGCTTGAGGCATAGCTAT+GGG | 0.599077 | 8:+11568081 | None:intergenic |
CGTCTCCGGGAGCGATCGGT+AGG | 0.601980 | 8:-11570137 | MsaT041766.1:CDS |
GCTAAGATCGGTGCTGAAGG+TGG | 0.602432 | 8:-11569808 | MsaT041766.1:CDS |
ACCGGAGAGGAAGAGAGCGA+AGG | 0.606990 | 8:-11569452 | MsaT041766.1:CDS |
ATTCGCGCCTCTGGAGCTAG+AGG | 0.614912 | 8:-11569631 | MsaT041766.1:CDS |
TGGTGAAGCTTATGAACAAG+CGG | 0.615901 | 8:-11569356 | MsaT041766.1:CDS |
TCGAATCCATCTCCGGCGAG+TGG | 0.616080 | 8:-11570177 | MsaT041766.1:CDS |
AAATCGGAGAAAGCTAAGAT+CGG | 0.619321 | 8:-11569820 | MsaT041766.1:CDS |
GGTGACGGTTGCGGCACCGG+CGG | 0.620431 | 8:-11570109 | MsaT041766.1:CDS |
GTTCCGTTAGGAATTCCTGT+TGG | 0.621548 | 8:-11569655 | MsaT041766.1:CDS |
TTGGAGCGAAGCAGCGACGG+CGG | 0.631965 | 8:-11570013 | MsaT041766.1:CDS |
GGAGATGGAGAACCACTCGC+CGG | 0.634434 | 8:+11570165 | None:intergenic |
GGTAAACTGTCGCTTGACAC+CGG | 0.634602 | 8:+11569478 | None:intergenic |
ATTCGCGCCTCTAGCTCCAG+AGG | 0.645061 | 8:+11569624 | None:intergenic |
CTGCCTGTTTCACGTCCCAG+CGG | 0.645719 | 8:+11567918 | None:intergenic |
ACGACACGTGGAAGCAACGG+TGG | 0.649070 | 8:-11570051 | MsaT041766.1:CDS |
CCGATTCAGAATACGACACG+TGG | 0.663489 | 8:-11570063 | MsaT041766.1:CDS |
ATACCAACAGGAATTCCTAA+CGG | 0.670478 | 8:+11569652 | None:intergenic |
TCGCCGGAGATGGATTCGAG+TGG | 0.676446 | 8:+11570181 | None:intergenic |
ACAGTTTACCACCACCGGAG+AGG | 0.677094 | 8:-11569465 | MsaT041766.1:CDS |
TGATGAATTCAAATTCGAAG+GGG | 0.682099 | 8:-11569429 | MsaT041766.1:CDS |
TGACGACGACGAGATCCACT+CGG | 0.685256 | 8:-11570214 | MsaT041766.1:CDS |
GAATTCAGCTCAGAAACGCG+TGG | 0.694751 | 8:+11569535 | None:intergenic |
GCGGTGTTGATTGAAGCGTG+GGG | 0.735042 | 8:-11569994 | MsaT041766.1:CDS |
AGTGGATCGAGTTAACCGAG+TGG | 0.771483 | 8:+11570199 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 11567927 | 11570241 | 11567927 | ID=MsaG041766 |
Chr8 | mRNA | 11567927 | 11570241 | 11567927 | ID=MsaT041766.1;Parent=MsaG041766 |
Chr8 | exon | 11567927 | 11568124 | 11567927 | ID=MsaT041766.1.exon2;Parent=MsaT041766.1 |
Chr8 | CDS | 11567927 | 11568124 | 11567927 | ID=cds.MsaT041766.1;Parent=MsaT041766.1 |
Chr8 | exon | 11569255 | 11570241 | 11569255 | ID=MsaT041766.1.exon1;Parent=MsaT041766.1 |
Chr8 | CDS | 11569255 | 11570241 | 11569255 | ID=cds.MsaT041766.1;Parent=MsaT041766.1 |
Gene Sequence |
Protein sequence |