AlfalfaGEDB | MsaG041791

M. sativa ssp. caerulea / MsaG041791

KEGG: K12412
GO: -
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041791	XP_003627433.1	82.022	89	15	1	1	88	1	89	2.12e-40	142

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041791	tr\|G7L955\|G7L955_MEDTR	82.022	89	15	1	1	88	1	89	1.01e-40	142

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TFs/TRs:

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Gene ID	Type	Classification
MsaG041791	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000029	MsaG041791	0.834825	4.363136e-56	1.453870e-53
MsaG000062	MsaG041791	0.800753	2.079748e-48	2.860226e-46
MsaG000070	MsaG041791	0.831569	2.796674e-55	8.467970e-53
MsaG000083	MsaG041791	0.835948	2.276204e-56	7.844132e-54
MsaG000113	MsaG041791	0.854249	2.691350e-61	1.692926e-58
MsaG000151	MsaG041791	0.871030	1.901836e-66	2.302239e-63
MsaG000153	MsaG041791	0.834449	5.418413e-56	1.785341e-53
MsaG000207	MsaG041791	0.819085	2.441402e-52	5.241829e-50
MsaG000213	MsaG041791	0.875539	5.902942e-68	8.694146e-65
MsaG000235	MsaG041791	0.808630	4.801343e-50	7.932891e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041791	MtrunA17_Chr8g0345001	82.022	89	15	1	1	88	1	89	1.95e-44	142
MsaG041791	MtrunA17_Chr3g0093131	46.053	76	38	2	10	84	14	87	5.05e-15	67.0
MsaG041791	MtrunA17_Chr2g0333981	40.000	70	42	0	15	84	10	79	1.31e-13	63.2
MsaG041791	MtrunA17_Chr2g0302091	49.254	67	24	3	11	75	31	89	1.02e-12	61.2
MsaG041791	MtrunA17_Chr8g0379021	38.462	78	48	0	7	84	2	79	1.97e-12	60.1
MsaG041791	MtrunA17_Chr4g0018951	46.000	50	27	0	35	84	30	79	6.69e-12	58.5
MsaG041791	MtrunA17_Chr1g0206991	37.313	67	42	0	18	84	10	76	1.39e-11	57.8
MsaG041791	MtrunA17_Chr1g0175601	44.828	58	32	0	18	75	3	60	2.55e-11	57.0
MsaG041791	MtrunA17_Chr1g0175611	44.828	58	32	0	18	75	3	60	2.61e-11	57.0
MsaG041791	MtrunA17_Chr1g0169761	43.103	58	33	0	18	75	3	60	3.07e-11	57.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041791	AT1G65360.1	43.284	67	38	0	18	84	8	74	4.53e-12	60.1
MsaG041791	AT3G66656.1	44.068	59	33	0	18	76	3	61	7.21e-12	58.9

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Find 10 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTTTAATGATGGTGT+TGG	0.578193	8:+11916059	None:intergenic
AAGTGTTTAATGATGGTGTT+GGG	0.517003	8:+11916060	None:intergenic
AGCTTCTCAAAACGAAAACT+AGG	0.507614	8:-11916185	MsaT041791.1:CDS
ATCGAGAAAGTGTTTAATGA+TGG	0.483259	8:+11916053	None:intergenic
CATTAAACACTTTCTCGATA+AGG	0.403608	8:-11916049	MsaT041791.1:CDS
GATCCAATGGCTTCTTCAAA+CGG	0.464728	8:-11916293	None:intergenic
GCTTCTCAAAACGAAAACTA+GGG	0.598511	8:-11916184	MsaT041791.1:CDS
TTAATGATGGTGTTGGGTTA+GGG	0.424641	8:+11916066	None:intergenic
TTTAATGATGGTGTTGGGTT+AGG	0.307670	8:+11916065	None:intergenic
TTTCCGTTTGAAGAAGCCAT+TGG	0.483053	8:+11916290	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	11916001	11916309	11916001	ID=MsaG041791
Chr8	mRNA	11916001	11916309	11916001	ID=MsaT041791.1;Parent=MsaG041791
Chr8	exon	11916001	11916309	11916001	ID=MsaT041791.1.exon1;Parent=MsaT041791.1
Chr8	CDS	11916001	11916309	11916001	ID=cds.MsaT041791.1;Parent=MsaT041791.1

Gene Sequence	>MsaT041791.1 ATGGCTTCTTCAAACGGAAACAAGACATCAACAAAAAGCAACAACAAACGTAAGAGAACTATTAAAATCAAGAAAGCAGAACAATCAAACAAGCCCCGTGATAGCTTCTCAAAACGAAAACTAGGGCTCTTCAACAAAGTTACAGAACAATCTATTCTATGCAATGCAAAAACTGCAATGATCATCACTTCGCCAAACGAAAAACTCTACGTTTGTGGTCACCCTAACCCAACACCATCATTAAACACTTTCTCGATAAGGAAAACCCAGTCATCGACGCTGAAAAAAGGAAGCAAGATGATGGCGTAG
Protein sequence	>MsaT041791.1 MASSNGNKTSTKSNNKRKRTIKIKKAEQSNKPRDSFSKRKLGLFNKVTEQSILCNAKTAMIITSPNEKLYVCGHPNPTPSLNTFSIRKTQSSTLKKGSKMMA*