AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG041791


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041791 MtrunA17_Chr8g0345001 82.022 89 15 1 1 88 1 89 1.95e-44 142
MsaG041791 MtrunA17_Chr3g0093131 46.053 76 38 2 10 84 14 87 5.05e-15 67.0
MsaG041791 MtrunA17_Chr2g0333981 40.000 70 42 0 15 84 10 79 1.31e-13 63.2
MsaG041791 MtrunA17_Chr2g0302091 49.254 67 24 3 11 75 31 89 1.02e-12 61.2
MsaG041791 MtrunA17_Chr8g0379021 38.462 78 48 0 7 84 2 79 1.97e-12 60.1
MsaG041791 MtrunA17_Chr4g0018951 46.000 50 27 0 35 84 30 79 6.69e-12 58.5
MsaG041791 MtrunA17_Chr1g0206991 37.313 67 42 0 18 84 10 76 1.39e-11 57.8
MsaG041791 MtrunA17_Chr1g0175601 44.828 58 32 0 18 75 3 60 2.55e-11 57.0
MsaG041791 MtrunA17_Chr1g0175611 44.828 58 32 0 18 75 3 60 2.61e-11 57.0
MsaG041791 MtrunA17_Chr1g0169761 43.103 58 33 0 18 75 3 60 3.07e-11 57.0
MsaG041791 MtrunA17_Chr1g0180591 44.828 58 32 0 18 75 3 60 4.24e-11 56.6
MsaG041791 MtrunA17_Chr3g0099421 42.254 71 38 1 9 76 23 93 4.46e-11 57.4
MsaG041791 MtrunA17_Chr8g0376821 43.103 58 33 0 18 75 3 60 5.49e-11 56.2
MsaG041791 MtrunA17_Chr5g0419601 37.179 78 48 1 18 94 10 87 8.79e-11 56.2
MsaG041791 MtrunA17_Chr5g0422941 38.806 67 41 0 18 84 10 76 9.15e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041791 AT1G65360.1 43.284 67 38 0 18 84 8 74 4.53e-12 60.1
MsaG041791 AT3G66656.1 44.068 59 33 0 18 76 3 61 7.21e-12 58.9

Find 10 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAATGATGGTGTTGGGTT+AGG 0.307670 8:+11916065 None:intergenic
CATTAAACACTTTCTCGATA+AGG 0.403608 8:-11916049 MsaT041791.1:CDS
TTAATGATGGTGTTGGGTTA+GGG 0.424641 8:+11916066 None:intergenic
GATCCAATGGCTTCTTCAAA+CGG 0.464728 8:-11916293 None:intergenic
TTTCCGTTTGAAGAAGCCAT+TGG 0.483053 8:+11916290 None:intergenic
ATCGAGAAAGTGTTTAATGA+TGG 0.483259 8:+11916053 None:intergenic
AGCTTCTCAAAACGAAAACT+AGG 0.507614 8:-11916185 MsaT041791.1:CDS
AAGTGTTTAATGATGGTGTT+GGG 0.517003 8:+11916060 None:intergenic
AAAGTGTTTAATGATGGTGT+TGG 0.578193 8:+11916059 None:intergenic
GCTTCTCAAAACGAAAACTA+GGG 0.598511 8:-11916184 MsaT041791.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 11916001 11916309 11916001 ID=MsaG041791
Chr8 mRNA 11916001 11916309 11916001 ID=MsaT041791.1;Parent=MsaG041791
Chr8 exon 11916001 11916309 11916001 ID=MsaT041791.1.exon1;Parent=MsaT041791.1
Chr8 CDS 11916001 11916309 11916001 ID=cds.MsaT041791.1;Parent=MsaT041791.1
Gene Sequence

>MsaT041791.1

ATGGCTTCTTCAAACGGAAACAAGACATCAACAAAAAGCAACAACAAACGTAAGAGAACTATTAAAATCAAGAAAGCAGAACAATCAAACAAGCCCCGTGATAGCTTCTCAAAACGAAAACTAGGGCTCTTCAACAAAGTTACAGAACAATCTATTCTATGCAATGCAAAAACTGCAATGATCATCACTTCGCCAAACGAAAAACTCTACGTTTGTGGTCACCCTAACCCAACACCATCATTAAACACTTTCTCGATAAGGAAAACCCAGTCATCGACGCTGAAAAAAGGAAGCAAGATGATGGCGTAG

Protein sequence

>MsaT041791.1

MASSNGNKTSTKSNNKRKRTIKIKKAEQSNKPRDSFSKRKLGLFNKVTEQSILCNAKTAMIITSPNEKLYVCGHPNPTPSLNTFSIRKTQSSTLKKGSKMMA*