AlfalfaGEDB | MsaG041862

M. sativa ssp. caerulea / MsaG041862

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041862	XP_013444538.1	97.452	157	4	0	1	157	181	337	3.91e-103	310

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041862	sp\|O81037\|BH070_ARATH	57.764	161	59	4	1	157	193	348	6.68e-53	175

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041862	tr\|A0A072TNY8\|A0A072TNY8_MEDTR	97.452	157	4	0	1	157	181	337	1.87e-103	310

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TFs/TRs:

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Gene ID	Type	Classification
MsaG041862	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002888	MsaG041862	0.800277	2.598050e-48	3.534686e-46
MsaG005434	MsaG041862	0.816114	1.133605e-51	2.254075e-49
MsaG006759	MsaG041862	0.843494	2.526412e-58	1.102200e-55
MsaG007372	MsaG041862	0.808504	5.107951e-50	8.413796e-48
MsaG008892	MsaG041862	0.800327	2.538666e-48	3.457792e-46
MsaG009757	MsaG041862	0.801848	1.244562e-48	1.754562e-46
MsaG010331	MsaG041862	0.801237	1.658674e-48	2.306034e-46
MsaG010332	MsaG041862	0.811659	1.075617e-50	1.912857e-48
MsaG010334	MsaG041862	0.804410	3.694718e-49	5.525259e-47
MsaG010573	MsaG041862	0.832867	1.340221e-55	4.214121e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041862	MtrunA17_Chr8g0345871	97.452	157	4	0	1	157	181	337	3.60e-107	310
MsaG041862	MtrunA17_Chr3g0132471	51.111	180	68	3	1	162	116	293	4.34e-54	174
MsaG041862	MtrunA17_Chr0c01g0489461	55.429	175	60	4	1	157	195	369	2.02e-52	171
MsaG041862	MtrunA17_Chr8g0366551	50.289	173	71	3	1	161	124	293	1.30e-50	165
MsaG041862	MtrunA17_Chr7g0273081	51.190	168	72	2	1	158	116	283	9.18e-49	160
MsaG041862	MtrunA17_Chr1g0191571	50.581	172	71	3	1	158	136	307	4.65e-48	159
MsaG041862	MtrunA17_Chr5g0426851	45.810	179	75	4	1	162	100	273	1.85e-46	154
MsaG041862	MtrunA17_Chr2g0287761	44.970	169	85	1	1	161	1	169	1.04e-40	135
MsaG041862	MtrunA17_Chr1g0158941	36.022	186	90	3	1	157	87	272	5.23e-32	116
MsaG041862	MtrunA17_Chr1g0185621	30.986	142	91	3	3	139	476	615	4.67e-15	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG041862	AT2G46810.2	57.927	164	54	4	1	157	121	276	1.08e-54	175
MsaG041862	AT2G46810.4	57.407	162	60	4	1	158	121	277	2.28e-54	175
MsaG041862	AT2G46810.3	57.764	161	59	4	1	157	181	336	5.35e-54	175
MsaG041862	AT2G46810.1	57.764	161	59	4	1	157	193	348	6.79e-54	175
MsaG041862	AT4G01460.1	52.941	170	70	3	1	161	115	283	5.92e-50	163
MsaG041862	AT4G01460.2	52.941	170	70	3	1	161	115	283	5.92e-50	163
MsaG041862	AT3G24140.2	51.977	177	65	2	1	157	197	373	6.51e-49	163
MsaG041862	AT3G24140.1	51.977	177	65	2	1	157	197	373	7.85e-49	163
MsaG041862	AT1G22490.1	49.711	173	70	3	1	162	115	281	8.99e-48	157
MsaG041862	AT1G72210.2	48.810	168	76	3	1	159	125	291	1.40e-46	154

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Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCTGGTCAATTGATAA+AGG	0.417902	8:-13013769	MsaT041862.1:CDS
AAGGCACATGGTGGTGGACT+TGG	0.355908	8:-13008464	MsaT041862.1:CDS
AATTTCATTCCATAACTAGG+TGG	0.671528	8:+13013900	None:intergenic
ACCCTTTGAACATATGAAGA+TGG	0.543479	8:+13014440	None:intergenic
ACTCATAAGATGTGATGTTT+AGG	0.372626	8:+13013706	None:intergenic
ACTCTACTCCTTCAATCTCA+AGG	0.617899	8:-13013676	MsaT041862.1:intron
AGGCACATGGTGGTGGACTT+GGG	0.427839	8:-13008463	MsaT041862.1:CDS
AGGTGGTGATGATGATGATG+AGG	0.648803	8:+13013917	None:intergenic
ATATTGCTGTTGAACGTAAT+AGG	0.401299	8:-13014508	MsaT041862.1:CDS
ATCACCTTGTGAAGAAAATG+AGG	0.546176	8:-13013877	MsaT041862.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	13008430	13014537	13008430	ID=MsaG041862
Chr8	mRNA	13008430	13014537	13008430	ID=MsaT041862.1;Parent=MsaG041862
Chr8	exon	13008430	13008483	13008430	ID=MsaT041862.1.exon3;Parent=MsaT041862.1
Chr8	CDS	13008430	13008483	13008430	ID=cds.MsaT041862.1;Parent=MsaT041862.1
Chr8	exon	13013677	13014051	13013677	ID=MsaT041862.1.exon2;Parent=MsaT041862.1
Chr8	CDS	13013677	13014051	13013677	ID=cds.MsaT041862.1;Parent=MsaT041862.1
Chr8	exon	13014442	13014537	13014442	ID=MsaT041862.1.exon1;Parent=MsaT041862.1
Chr8	CDS	13014442	13014537	13014442	ID=cds.MsaT041862.1;Parent=MsaT041862.1

Gene Sequence

>MsaT041862.1

ATGACACATATTGCTGTTGAACGTAATAGGAGACGCCAAATGAATGACCACCTTAGTGTTCTTAGGTCTCTTATGCCATCTTCATATGTTCAAAGGGGTGACCAAGCATCAATAATTGGAGGAGCAATTGATTTTGTGAAAGAGTTGGAACAATTGCTTGAATCTCTTGAAGCACAAAAAAGGGTAAAAAAGAATGAAGATTTTGGGCCCTCATCATCATCATCACCACCTAGTTATGGAATGAAATTATCACCTTGTGAAGAAAATGAGGTAAAGGCAGAAAACAAATCAGAAGCAGCAGATATAAAAGTAACATTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCAAAAAAAAGGCTGGTCAATTGATAAAGGTTATTGTTGCTTTGGAAAATCTTAGGCTAACTATTCTTCACCTAAACATCACATCTTATGAGTCTTCTGTACTCTACTCCTTCAATCTCAAGGCACATGGTGGTGGACTTGGGGATAGAGGGTGGGGCCCAAATATGTCTACATAA

Protein sequence

>MsaT041862.1

MTHIAVERNRRRQMNDHLSVLRSLMPSSYVQRGDQASIIGGAIDFVKELEQLLESLEAQKRVKKNEDFGPSSSSSPPSYGMKLSPCEENEVKAENKSEAADIKVTLIQTHVNLKIECKKKAGQLIKVIVALENLRLTILHLNITSYESSVLYSFNLKAHGGGLGDRGWGPNMST*