AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG041940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041940 MtrunA17_Chr8g0346711 97.932 677 14 0 1 677 1 677 0.0 1389
MsaG041940 MtrunA17_Chr7g0239061 54.891 685 250 13 24 665 9 677 0.0 699
MsaG041940 MtrunA17_Chr4g0009751 58.013 624 217 14 28 625 18 622 0.0 655
MsaG041940 MtrunA17_Chr2g0276781 52.160 648 270 13 20 649 14 639 0.0 625
MsaG041940 MtrunA17_Chr8g0385791 63.636 363 126 5 10 367 39 400 2.26e-157 474
MsaG041940 MtrunA17_Chr8g0385791 37.662 231 117 7 430 645 580 798 2.80e-28 121
MsaG041940 MtrunA17_Chr5g0433301 48.214 392 187 6 8 394 3 383 8.24e-114 362
MsaG041940 MtrunA17_Chr5g0433301 43.038 79 43 1 569 645 725 803 1.25e-14 77.8
MsaG041940 MtrunA17_Chr3g0109391 49.733 374 172 6 26 394 23 385 1.01e-113 361
MsaG041940 MtrunA17_Chr3g0109391 42.697 89 48 2 559 645 724 811 4.42e-14 75.9
MsaG041940 MtrunA17_Chr2g0285461 52.907 344 157 4 26 364 20 363 2.64e-113 362
MsaG041940 MtrunA17_Chr2g0285461 29.148 223 145 5 425 645 652 863 9.64e-17 84.7
MsaG041940 MtrunA17_Chr8g0376771 52.210 362 166 5 8 364 3 362 4.03e-113 362
MsaG041940 MtrunA17_Chr8g0376771 41.935 93 51 2 555 645 778 869 2.27e-15 80.1
MsaG041940 MtrunA17_Chr2g0326281 48.819 381 164 9 27 379 54 431 1.50e-110 352
MsaG041940 MtrunA17_Chr2g0326281 51.579 95 45 1 558 651 695 789 2.16e-24 108
MsaG041940 MtrunA17_Chr4g0029671 48.098 368 173 8 27 379 52 416 1.99e-108 346
MsaG041940 MtrunA17_Chr4g0029671 55.056 89 39 1 558 645 663 751 1.30e-24 109
MsaG041940 MtrunA17_Chr1g0156321 51.585 347 163 4 16 358 31 376 2.30e-108 348
MsaG041940 MtrunA17_Chr1g0156321 41.748 103 54 3 545 645 744 842 7.38e-16 81.6
MsaG041940 MtrunA17_Chr4g0046371 47.872 376 154 9 29 378 38 397 1.18e-105 336
MsaG041940 MtrunA17_Chr8g0389081 52.149 349 157 7 22 362 24 370 5.47e-102 335
MsaG041940 MtrunA17_Chr8g0389081 46.154 91 46 2 557 645 984 1073 1.42e-18 90.5
MsaG041940 MtrunA17_Chr2g0282961 46.556 363 172 7 29 377 53 407 1.47e-100 320
MsaG041940 MtrunA17_Chr2g0301251 50.888 338 159 5 29 361 23 358 8.38e-98 325
MsaG041940 MtrunA17_Chr2g0301251 46.154 91 46 2 557 645 985 1074 2.81e-18 89.7
MsaG041940 MtrunA17_Chr4g0070181 51.032 339 157 7 29 361 23 358 1.60e-95 318
MsaG041940 MtrunA17_Chr4g0070181 46.154 91 46 2 557 645 993 1082 1.46e-18 90.5
MsaG041940 MtrunA17_Chr2g0326761 39.633 381 179 11 21 358 3 375 1.52e-66 232
MsaG041940 MtrunA17_Chr1g0181211 36.567 402 200 8 29 381 27 422 5.95e-64 224
MsaG041940 MtrunA17_Chr4g0028971 36.715 414 199 10 16 379 3 403 3.20e-62 220
MsaG041940 MtrunA17_Chr1g0199681 37.280 397 197 10 26 379 91 478 9.04e-61 216
MsaG041940 MtrunA17_Chr7g0264171 34.793 411 206 10 23 379 25 427 4.09e-59 209
MsaG041940 MtrunA17_Chr3g0115271 35.128 390 209 9 26 377 16 399 4.72e-56 201
MsaG041940 MtrunA17_Chr5g0417281 36.031 383 199 13 14 380 2 354 7.23e-56 199
MsaG041940 MtrunA17_Chr7g0264161 39.482 309 171 8 38 338 1 301 3.21e-55 190
MsaG041940 MtrunA17_Chr5g0424931 31.797 434 225 13 29 404 19 439 4.75e-54 194
MsaG041940 MtrunA17_Chr8g0356211 43.777 233 119 7 139 366 2 227 1.65e-53 186
MsaG041940 MtrunA17_Chr5g0436761 33.333 345 211 8 29 366 12 344 2.03e-50 182
MsaG041940 MtrunA17_Chr1g0178011 32.653 343 218 8 29 366 12 346 1.89e-47 174
MsaG041940 MtrunA17_Chr2g0289221 36.335 322 173 11 29 338 20 321 2.00e-46 168
MsaG041940 MtrunA17_Chr5g0417211 31.880 367 204 13 29 375 12 352 5.94e-40 151
MsaG041940 MtrunA17_Chr2g0277461 27.481 393 260 8 29 407 13 394 1.17e-38 149
MsaG041940 MtrunA17_Chr5g0424801 29.412 340 218 9 29 360 12 337 1.52e-35 138
MsaG041940 MtrunA17_Chr5g0425661 35.567 194 117 2 29 219 37 225 1.04e-34 132
MsaG041940 MtrunA17_Chr2g0277531 29.299 314 194 9 26 328 17 313 2.20e-34 133
MsaG041940 MtrunA17_Chr5g0425261 29.480 346 221 10 29 365 12 343 3.39e-34 134
MsaG041940 MtrunA17_Chr5g0424741 27.446 368 224 12 29 360 12 372 6.80e-34 136
MsaG041940 MtrunA17_Chr1g0156301 37.838 111 48 4 545 652 167 259 4.29e-12 67.0
MsaG041940 MtrunA17_Chr1g0193861 37.349 83 45 1 561 636 86 168 3.05e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG041940 AT2G46530.1 53.195 673 234 13 1 668 1 597 0.0 653
MsaG041940 AT4G23980.2 56.782 634 226 13 26 645 9 608 0.0 650
MsaG041940 AT2G46530.3 54.128 654 227 12 20 668 33 618 0.0 650
MsaG041940 AT4G23980.1 56.358 637 226 12 26 645 9 610 0.0 649
MsaG041940 AT3G61830.1 53.594 640 225 11 23 658 19 590 0.0 635
MsaG041940 AT1G59750.4 50.076 657 283 15 8 648 1 628 0.0 587
MsaG041940 AT1G59750.2 49.924 659 283 15 8 648 1 630 0.0 586
MsaG041940 AT1G59750.1 49.698 662 283 15 8 648 1 633 0.0 585
MsaG041940 AT1G59750.3 49.698 662 283 15 8 648 1 633 0.0 585
MsaG041940 AT3G61830.2 52.554 607 216 11 56 658 1 539 0.0 578
MsaG041940 AT1G35540.1 47.319 634 266 16 26 648 24 600 0.0 541
MsaG041940 AT2G46530.2 51.865 563 199 11 110 668 16 510 4.36e-179 520
MsaG041940 AT1G34410.1 46.880 625 273 17 26 643 24 596 1.97e-174 511
MsaG041940 AT1G34310.1 47.573 618 265 19 26 636 24 589 3.78e-173 507
MsaG041940 AT1G35240.1 45.367 626 267 14 26 643 24 582 5.39e-171 502
MsaG041940 AT1G35520.1 45.177 622 274 12 26 636 24 589 1.54e-170 501
MsaG041940 AT1G34390.1 46.785 622 262 13 26 636 24 587 3.98e-169 497
MsaG041940 AT5G62000.2 64.756 349 112 5 26 367 58 402 1.02e-159 482
MsaG041940 AT5G62000.2 53.846 91 41 1 556 645 731 821 2.14e-25 112
MsaG041940 AT5G62000.5 64.756 349 112 5 26 367 58 402 1.02e-159 482
MsaG041940 AT5G62000.5 53.846 91 41 1 556 645 731 821 2.14e-25 112
MsaG041940 AT5G62000.3 64.756 349 112 5 26 367 58 402 1.02e-159 482
MsaG041940 AT5G62000.3 53.846 91 41 1 556 645 731 821 2.14e-25 112
MsaG041940 AT5G62000.1 64.756 349 112 5 26 367 58 402 1.02e-159 482
MsaG041940 AT5G62000.1 53.846 91 41 1 556 645 731 821 2.14e-25 112
MsaG041940 AT5G62000.4 64.756 349 112 5 26 367 58 402 2.58e-159 481
MsaG041940 AT5G62000.4 53.846 91 41 1 556 645 731 821 2.78e-25 112
MsaG041940 AT1G34170.1 42.276 492 251 13 26 504 22 493 1.12e-121 372
MsaG041940 AT5G37020.2 52.326 344 159 4 26 364 19 362 1.39e-113 359
MsaG041940 AT5G37020.1 52.326 344 159 4 26 364 19 362 4.86e-113 359
MsaG041940 AT5G37020.1 43.023 86 46 2 562 645 709 793 1.90e-13 74.3
MsaG041940 AT5G60450.2 49.454 366 167 8 26 377 38 399 1.43e-110 351
MsaG041940 AT5G60450.2 55.056 89 39 1 556 643 639 727 1.12e-23 107
MsaG041940 AT5G60450.1 49.454 366 167 8 26 377 62 423 2.34e-110 351
MsaG041940 AT5G60450.1 55.056 89 39 1 556 643 663 751 1.26e-23 107
MsaG041940 AT1G30330.1 50.689 363 171 6 8 364 3 363 3.13e-109 352
MsaG041940 AT1G30330.1 39.785 93 53 2 555 645 791 882 1.69e-14 77.8
MsaG041940 AT1G30330.3 51.884 345 159 5 26 364 22 365 3.54e-109 352
MsaG041940 AT1G30330.3 39.785 93 53 2 555 645 793 884 1.67e-14 77.8
MsaG041940 AT1G30330.2 51.884 345 159 5 26 364 22 365 3.54e-109 352
MsaG041940 AT1G30330.2 39.785 93 53 2 555 645 793 884 1.67e-14 77.8
MsaG041940 AT1G19850.2 50.432 347 165 5 18 358 32 377 6.16e-108 348
MsaG041940 AT1G19850.2 42.105 114 58 5 545 653 771 881 8.54e-16 82.0
MsaG041940 AT1G19850.1 50.432 347 165 5 18 358 43 388 7.20e-108 348
MsaG041940 AT1G19850.1 42.105 114 58 5 545 653 782 892 8.98e-16 82.0
MsaG041940 AT1G34170.2 40.244 492 235 13 26 504 22 467 9.11e-108 335
MsaG041940 AT1G34170.3 46.610 354 155 5 26 377 22 343 4.88e-105 330
MsaG041940 AT1G34170.3 64.773 88 31 0 561 648 436 523 5.26e-33 134
MsaG041940 AT2G33860.1 47.674 344 159 7 29 359 54 389 1.35e-100 320
MsaG041940 AT1G19220.1 50.147 339 160 7 29 361 23 358 2.50e-92 310
MsaG041940 AT1G19220.1 48.352 91 44 2 557 645 957 1046 7.75e-20 95.1
MsaG041940 AT5G20730.2 48.148 351 157 7 25 361 20 359 5.79e-91 307
MsaG041940 AT5G20730.2 46.154 91 46 2 557 645 1036 1125 9.55e-19 91.7
MsaG041940 AT5G20730.1 48.011 352 157 7 25 361 20 360 1.29e-90 306
MsaG041940 AT5G20730.1 46.154 91 46 2 557 645 1037 1126 9.89e-19 91.7
MsaG041940 AT5G20730.3 48.011 352 157 7 25 361 20 360 1.31e-90 306
MsaG041940 AT5G20730.3 46.154 91 46 2 557 645 1037 1126 9.83e-19 91.7
MsaG041940 AT5G37020.3 56.790 243 102 2 125 364 25 267 3.04e-84 280
MsaG041940 AT5G37020.3 43.023 86 46 2 562 645 614 698 1.88e-13 74.3
MsaG041940 AT2G33860.2 51.724 232 108 3 131 359 2 232 3.23e-74 246
MsaG041940 AT1G43950.1 55.122 205 86 4 26 230 24 222 6.12e-70 227
MsaG041940 AT4G30080.1 39.378 386 177 11 19 358 9 383 1.37e-65 229
MsaG041940 AT2G28350.2 38.806 402 188 12 29 380 10 403 1.67e-65 229
MsaG041940 AT2G28350.1 38.554 415 192 13 16 380 2 403 2.90e-65 228
MsaG041940 AT1G77850.1 33.780 373 188 11 30 358 20 377 1.38e-49 183
MsaG041940 AT1G77850.2 33.780 373 188 11 30 358 20 377 1.98e-49 182
MsaG041940 AT3G62100.1 36.842 95 52 2 548 636 74 166 2.12e-11 63.5
MsaG041940 AT3G16500.2 35.185 108 51 3 561 649 154 261 2.83e-11 65.1
MsaG041940 AT5G25890.1 35.065 77 50 0 561 637 83 159 5.04e-11 62.4
MsaG041940 AT3G17600.1 38.554 83 47 2 561 640 75 156 6.73e-11 61.6

Find 142 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTGATTGTTGGTTATT+TGG 0.118738 8:-14246004 MsaT041940.1:CDS
CAATTAGAGTACCTTCTTTC+AGG 0.175630 8:+14246957 None:intergenic
GTTCGACAGCACCGGTTAAT+TGG 0.199049 8:+14246200 None:intergenic
CTGGCACTATTGTTGGGGTT+GGG 0.225274 8:-14246677 MsaT041940.1:CDS
GAGAAATTATTTGATATTAA+AGG 0.227087 8:-14245024 MsaT041940.1:CDS
CTTGACTTAACCATGTTAAA+TGG 0.228353 8:-14245072 MsaT041940.1:CDS
TGTTGGTTTGAATAAGTATT+TGG 0.232129 8:-14247048 MsaT041940.1:CDS
ACATTCAAATGTGGTGAATT+AGG 0.237390 8:+14246121 None:intergenic
GGTAAGGATAATAGATTCTT+TGG 0.239075 8:+14245883 None:intergenic
TCCCATGAAGAAACTCTTTC+TGG 0.255185 8:+14246491 None:intergenic
AAGTAACTCTCCATTTGTTT+TGG 0.269348 8:+14244989 None:intergenic
TCAATCTCTAATGAAGAATT+AGG 0.281097 8:+14244740 None:intergenic
AGCTCCTGAGTTGGAGTTGC+TGG 0.281379 8:+14247812 None:intergenic
AATGAGTGAAACTTCTGTTT+TGG 0.287661 8:+14248018 None:intergenic
TTTCTTCTGCTGCCCTTTGT+TGG 0.299837 8:+14245811 None:intergenic
GAGTCTTGGTAGAAGGAATT+TGG 0.300732 8:-14246144 MsaT041940.1:CDS
TTTGGAGAATCAGAAGGATT+TGG 0.313683 8:+14248036 None:intergenic
TCTTGTTGAGAACTTCCTCC+TGG 0.315796 8:+14249065 None:intergenic
TGGCACTATTGTTGGGGTTG+GGG 0.317435 8:-14246676 MsaT041940.1:CDS
CACATCTTGAGTGTAATCTA+AGG 0.329674 8:-14249091 MsaT041940.1:CDS
GGAAGTTCTCAACAAGAAAA+AGG 0.336508 8:-14249059 MsaT041940.1:intron
ATCTCCGGCCACCAATCTTT+TGG 0.336866 8:+14247537 None:intergenic
AGCTTGTTCTGCCATTCATT+TGG 0.341680 8:+14245770 None:intergenic
GAAGAAACTCTTTCTGGTCT+TGG 0.342544 8:+14246497 None:intergenic
AAAGTAGGAGATGCTATAAA+AGG 0.345024 8:+14246461 None:intergenic
AAATATCTCACATCTGATTC+TGG 0.345650 8:+14248231 None:intergenic
AAAACTCTGTCACCAGTATT+AGG 0.366460 8:+14248687 None:intergenic
TCTGGCACTATTGTTGGGGT+TGG 0.378298 8:-14246678 MsaT041940.1:CDS
CTTGTTGAGAACTTCCTCCT+GGG 0.389724 8:+14249066 None:intergenic
GCGATGTTTGTGTTAGCATA+AGG 0.391550 8:+14246088 None:intergenic
CTCGTGAGCTTGGGAAGATC+CGG 0.395473 8:+14246228 None:intergenic
TTCGACAGCACCGGTTAATT+GGG 0.403276 8:+14246201 None:intergenic
ACGAGAATCCTCTTGATTGT+TGG 0.403737 8:-14246012 MsaT041940.1:CDS
CACTGATCAGGAATTGAATC+AGG 0.404063 8:-14248473 MsaT041940.1:CDS
GCACGCCAAGATGCATGCTT+TGG 0.405641 8:+14247246 None:intergenic
TACCTTAGTCCTTGTTCTCA+TGG 0.418020 8:+14245733 None:intergenic
TGAGTCTAGATTCACAGAAT+AGG 0.424499 8:-14244706 MsaT041940.1:CDS
TGTCGTCAATATTCAGTTGT+TGG 0.424519 8:-14248410 MsaT041940.1:intron
GACCAGAAAGAGTTTCTTCA+TGG 0.425372 8:-14246493 MsaT041940.1:CDS
GAGTCTAGATTCACAGAATA+GGG 0.429663 8:-14244705 MsaT041940.1:CDS
GAAGTTGTGTGCAGGACCTT+TGG 0.431799 8:-14248718 MsaT041940.1:CDS
TTGTTGGACAGTGAATAGTT+AGG 0.435729 8:+14245827 None:intergenic
ATTGGGTATGCTCGTGAGCT+TGG 0.437686 8:+14246218 None:intergenic
ATGATTTGTATGAAGAGTTA+TGG 0.440189 8:-14248740 MsaT041940.1:CDS
TTGGGTATGCTCGTGAGCTT+GGG 0.443603 8:+14246219 None:intergenic
AGGACTAGTCAGTTTATTGT+TGG 0.445609 8:-14247065 MsaT041940.1:CDS
CAATCTGACTCTCCTTGCCT+TGG 0.446520 8:+14246176 None:intergenic
CAGTGAAAAGCAAAAGATCT+AGG 0.447954 8:-14246421 MsaT041940.1:CDS
CGATGTTTGTGTTAGCATAA+GGG 0.449060 8:+14246089 None:intergenic
TTGGTGGATGTTCCTAATAC+TGG 0.450168 8:-14248699 MsaT041940.1:CDS
TTTCACATGCATTGGTGGTA+AGG 0.453304 8:+14245867 None:intergenic
AGCTCTAGAGTCTTGGTAGA+AGG 0.453433 8:-14246151 MsaT041940.1:CDS
GTAAGGATAATAGATTCTTT+GGG 0.458740 8:+14245884 None:intergenic
ATTTGTCGCATCCAAAAGAT+TGG 0.466204 8:-14247548 MsaT041940.1:CDS
TTCTCACTGGAGATCATTGA+AGG 0.467761 8:-14246631 MsaT041940.1:intron
CTAGCAGCAAAGGATCTTCA+TGG 0.467822 8:-14247791 MsaT041940.1:CDS
TTCAGTTTCACATGCATTGG+TGG 0.470670 8:+14245862 None:intergenic
CACGAGCATACCCAATTAAC+CGG 0.472338 8:-14246211 MsaT041940.1:CDS
GTTGTAAGCAAGTGCCTCCT+TGG 0.473074 8:+14247583 None:intergenic
GAATCAGAAGGATTTGGATC+AGG 0.474760 8:+14248042 None:intergenic
TTAAACATTGTTACTACAAG+TGG 0.477123 8:-14245908 MsaT041940.1:CDS
GGATTTGGATCAGGATCTAC+AGG 0.478045 8:+14248051 None:intergenic
TACCGAGTGCTTGCCTCCAT+TGG 0.478046 8:-14247929 MsaT041940.1:intron
GCTGCAAGCATCCACTGATC+AGG 0.479756 8:-14248485 MsaT041940.1:CDS
GTAGTAACAATGTTTAAACT+TGG 0.480637 8:+14245914 None:intergenic
TTAGTCCTTGTTCTCATGGA+TGG 0.481222 8:+14245737 None:intergenic
CTGATTCAATTCCTGATCAG+TGG 0.488028 8:+14248474 None:intergenic
CTACTTTCCTCAAGGTCACA+TGG 0.489690 8:-14248664 MsaT041940.1:CDS
TGGCTTGATATCACAGATGA+AGG 0.497591 8:+14247266 None:intergenic
CAATGCATGTGAAACTGAAA+AGG 0.505554 8:-14245858 MsaT041940.1:CDS
AGTTACGTTCCCAAAACAAA+TGG 0.506441 8:-14244999 MsaT041940.1:CDS
GACACCAGCAACTCCAACTC+AGG 0.508014 8:-14247816 MsaT041940.1:CDS
CCTTCCGATGTTTCATCTTG+CGG 0.511606 8:-14246398 MsaT041940.1:intron
GGCACTTGCTTACAACCGGC+TGG 0.513461 8:-14247576 MsaT041940.1:CDS
ATTGATGTTACTTACGGCCA+TGG 0.518924 8:+14244925 None:intergenic
AGGAGGCACTTGCTTACAAC+CGG 0.519222 8:-14247580 MsaT041940.1:CDS
TAGGAAAACAAAAGCATCTC+CGG 0.521346 8:+14247522 None:intergenic
GTTGTGTGCAGGACCTTTGG+TGG 0.521957 8:-14248715 MsaT041940.1:CDS
ATCGTTGTAGGGGAGAGAAC+GGG 0.522255 8:-14247337 MsaT041940.1:intron
AACTCAGGAGCTAGCAGCAA+AGG 0.522935 8:-14247801 MsaT041940.1:CDS
TTTGCTGCTAGCTCCTGAGT+TGG 0.523480 8:+14247803 None:intergenic
GAAAATGACATGATGCTTGT+CGG 0.530219 8:-14244955 MsaT041940.1:CDS
TCAAGCCAAAGCATGCATCT+TGG 0.530849 8:-14247251 MsaT041940.1:CDS
CTGATGCATCACCAAATGAA+TGG 0.532983 8:-14245781 MsaT041940.1:CDS
TTGTTGAGAACTTCCTCCTG+GGG 0.535275 8:+14249067 None:intergenic
GCCTTGGAGTTCGACAGCAC+CGG 0.537483 8:+14246192 None:intergenic
GATTGTAAGCTCTAGAGTCT+TGG 0.542325 8:-14246158 MsaT041940.1:CDS
CAGGATGGTCAAATTCTCAC+TGG 0.547764 8:-14246644 MsaT041940.1:CDS
ATCCATGAGAACAAGGACTA+AGG 0.547818 8:-14245735 MsaT041940.1:intron
GTTTGAGTGACATTCAAAGT+AGG 0.548095 8:+14246446 None:intergenic
ACTATTCACTGTCCAACAAA+GGG 0.548112 8:-14245823 MsaT041940.1:CDS
GAGTGTAATCTAAGGGCCCC+AGG 0.550495 8:-14249083 MsaT041940.1:CDS
AAATGAATGGCAGAACAAGC+TGG 0.554989 8:-14245768 MsaT041940.1:CDS
GATCGTTGTAGGGGAGAGAA+CGG 0.555589 8:-14247338 MsaT041940.1:intron
GGCAACTGAGAGTTGGCGTT+AGG 0.557425 8:-14247316 MsaT041940.1:CDS
TGCGACAAATGTACTCCAGC+CGG 0.557664 8:+14247561 None:intergenic
TGGTTTGAATAAGTATTTGG+AGG 0.558023 8:-14247045 MsaT041940.1:CDS
GTTTGTGTTAGCATAAGGGT+TGG 0.562713 8:+14246093 None:intergenic
GAGAGGACTCACCTGAAAGA+AGG 0.565238 8:-14246968 MsaT041940.1:intron
CCAAATAACCAACAATCAAG+AGG 0.566998 8:+14246004 None:intergenic
TGTCGCATCCAAAAGATTGG+TGG 0.567249 8:-14247545 MsaT041940.1:CDS
CTGTACCATCCATGAGAACA+AGG 0.567765 8:-14245742 MsaT041940.1:CDS
TCGCACGTGAGGCCATCGCT+CGG 0.572816 8:+14246058 None:intergenic
GGGGTTGGGGATGTATCAGC+AGG 0.575366 8:-14246663 MsaT041940.1:CDS
AACTATTCACTGTCCAACAA+AGG 0.576812 8:-14245824 MsaT041940.1:CDS
CTTCTACTCGGTCGCACGTG+AGG 0.579387 8:+14246047 None:intergenic
TGCTGTCGAACTCCAAGGCA+AGG 0.580611 8:-14246188 MsaT041940.1:CDS
AGGATCTTCATGGATTTGAG+TGG 0.588735 8:-14247781 MsaT041940.1:CDS
TACCAATGGAGGCAAGCACT+CGG 0.591772 8:+14247927 None:intergenic
GAGAACGGGCAACTGAGAGT+TGG 0.593646 8:-14247323 MsaT041940.1:CDS
ACCAGAAAGAGTTTCTTCAT+GGG 0.596388 8:-14246492 MsaT041940.1:CDS
TTTGAGAAGGTGCAAATGGA+AGG 0.597190 8:-14245114 MsaT041940.1:intron
TCGTGAGCTTGGGAAGATCC+GGG 0.597362 8:+14246229 None:intergenic
AAGTTTAAACACATATATAG+AGG 0.597684 8:-14247758 MsaT041940.1:intron
ACCGGTGCTGTCGAACTCCA+AGG 0.599461 8:-14246193 MsaT041940.1:CDS
TCGTCGTTTATTACAAACCA+AGG 0.600362 8:-14247184 MsaT041940.1:intron
ACATCTTGAGTGTAATCTAA+GGG 0.603165 8:-14249090 MsaT041940.1:CDS
TGCTTGTCGGTGATGATCCA+TGG 0.605617 8:-14244942 MsaT041940.1:CDS
ACTTGTTCCATGTGACCTTG+AGG 0.607836 8:+14248657 None:intergenic
AGATTCAAGATGAGATTCGA+AGG 0.609071 8:-14246990 MsaT041940.1:CDS
GATATCACAGATGAAGGCAT+AGG 0.610881 8:+14247272 None:intergenic
GCATCCAAAAGATTGGTGGC+CGG 0.615102 8:-14247541 MsaT041940.1:CDS
GGTAAGAAAATTACCAATGG+AGG 0.617017 8:+14247916 None:intergenic
TTGGAAGTTACATTCAAATG+TGG 0.618182 8:+14246112 None:intergenic
CAAGATGAGATTCGAAGGAG+AGG 0.618652 8:-14246985 MsaT041940.1:CDS
GAGTTATGGAAGTTGTGTGC+AGG 0.618746 8:-14248726 MsaT041940.1:CDS
TTCGACGGTAAATTGAAATG+TGG 0.618876 8:+14248445 None:intergenic
GCATCTGATACTAGCACACA+TGG 0.620237 8:-14247979 MsaT041940.1:CDS
TTGGGGATGTATCAGCAGGA+TGG 0.623115 8:-14246659 MsaT041940.1:CDS
TTCATCATAACCATTTAACA+TGG 0.625773 8:+14245062 None:intergenic
TTTGTAATAAACGACGAACA+TGG 0.635651 8:+14247190 None:intergenic
CGCACCGCAAGATGAAACAT+CGG 0.637238 8:+14246394 None:intergenic
ATCGCATCTAGACCGAGCGA+TGG 0.639085 8:-14246070 MsaT041940.1:CDS
TACTGTGATCAGGTCAACCA+AGG 0.641842 8:-14247600 MsaT041940.1:intron
ACACGGCATAAAATCTTCGA+CGG 0.643988 8:+14248430 None:intergenic
CAAATGGAAGGTGTAGCTGT+TGG 0.654600 8:-14245102 MsaT041940.1:CDS
ACAACTGAATATTGACGACA+CGG 0.657736 8:+14248413 None:intergenic
CCGCAAGATGAAACATCGGA+AGG 0.675865 8:+14246398 None:intergenic
GTATTAGGAACATCCACCAA+AGG 0.686860 8:+14248702 None:intergenic
TCTGATACTAGCACACATGG+TGG 0.705702 8:-14247976 MsaT041940.1:CDS
TGTGATCAGGTCAACCAAGG+AGG 0.725688 8:-14247597 MsaT041940.1:intron
TGTAATCTAAGGGCCCCAGG+AGG 0.747523 8:-14249080 MsaT041940.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 14244676 14249117 14244676 ID=MsaG041940
Chr8 mRNA 14244676 14249117 14244676 ID=MsaT041940.1;Parent=MsaG041940
Chr8 exon 14244676 14244835 14244676 ID=MsaT041940.1.exon14;Parent=MsaT041940.1
Chr8 CDS 14244676 14244835 14244676 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14244940 14245127 14244940 ID=MsaT041940.1.exon13;Parent=MsaT041940.1
Chr8 CDS 14244940 14245127 14244940 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14245736 14246262 14245736 ID=MsaT041940.1.exon12;Parent=MsaT041940.1
Chr8 CDS 14245736 14246262 14245736 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14246399 14246546 14246399 ID=MsaT041940.1.exon11;Parent=MsaT041940.1
Chr8 CDS 14246399 14246546 14246399 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14246632 14246704 14246632 ID=MsaT041940.1.exon10;Parent=MsaT041940.1
Chr8 CDS 14246632 14246704 14246632 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14246969 14247085 14246969 ID=MsaT041940.1.exon9;Parent=MsaT041940.1
Chr8 CDS 14246969 14247085 14246969 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14247185 14247349 14247185 ID=MsaT041940.1.exon8;Parent=MsaT041940.1
Chr8 CDS 14247185 14247349 14247185 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14247520 14247610 14247520 ID=MsaT041940.1.exon7;Parent=MsaT041940.1
Chr8 CDS 14247520 14247610 14247520 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14247759 14247843 14247759 ID=MsaT041940.1.exon6;Parent=MsaT041940.1
Chr8 CDS 14247759 14247843 14247759 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14247930 14248082 14247930 ID=MsaT041940.1.exon5;Parent=MsaT041940.1
Chr8 CDS 14247930 14248082 14247930 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14248242 14248298 14248242 ID=MsaT041940.1.exon4;Parent=MsaT041940.1
Chr8 CDS 14248242 14248298 14248242 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14248411 14248506 14248411 ID=MsaT041940.1.exon3;Parent=MsaT041940.1
Chr8 CDS 14248411 14248506 14248411 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14248659 14248774 14248659 ID=MsaT041940.1.exon2;Parent=MsaT041940.1
Chr8 CDS 14248659 14248774 14248659 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Chr8 exon 14249060 14249117 14249060 ID=MsaT041940.1.exon1;Parent=MsaT041940.1
Chr8 CDS 14249060 14249117 14249060 ID=cds.MsaT041940.1;Parent=MsaT041940.1
Gene Sequence

>MsaT041940.1

ATGGCACATCTTGAGTGTAATCTAAGGGCCCCAGGAGGAAGTTCTCAACAAGAAAAAGGTGTTAAAAATGATGATTTGTATGAAGAGTTATGGAAGTTGTGTGCAGGACCTTTGGTGGATGTTCCTAATACTGGTGACAGAGTTTTCTACTTTCCTCAAGGTCACATGGAACAACTGCAAGCATCCACTGATCAGGAATTGAATCAGGAAATTCCACATTTCAATTTACCGTCGAAGATTTTATGCCGTGTCGTCAATATTCAGTTGTTGGCTGAGCAAGAAACTGATGAGATTTATGCTTGTGTTGCTTTGCTTCCAGAATCAGATCAAACTGAGCCTGTAGATCCTGATCCAAATCCTTCTGATTCTCCAAAACAGAAGTTTCACTCATTTTGTAAAATATTAACTGCATCTGATACTAGCACACATGGTGGATTTTCAGTTCTTAGAAAGCATGCTACCGAGTGCTTGCCTCCATTGGACATGACACCAGCAACTCCAACTCAGGAGCTAGCAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAACACATATATAGAGGTCAACCAAGGAGGCACTTGCTTACAACCGGCTGGAGTACATTTGTCGCATCCAAAAGATTGGTGGCCGGAGATGCTTTTGTTTTCCTAAGGGGAGAGAACGGGCAACTGAGAGTTGGCGTTAGGCGTATAGCTAAGCAGCACAGTCCTATGCCTTCATCTGTGATATCAAGCCAAAGCATGCATCTTGGCGTGCTTGCTACTGCTTCTCACGCTGTTATGACTCGTACCATGTTCGTCGTTTATTACAAACCAAGGACTAGTCAGTTTATTGTTGGTTTGAATAAGTATTTGGAGGCAGTCAACAATCATAAGTTTTCTGTTGGTATGAGATTCAAGATGAGATTCGAAGGAGAGGACTCACCTGAAAGAAGATTTTCTGGCACTATTGTTGGGGTTGGGGATGTATCAGCAGGATGGTCAAATTCTCACTGGAGATCATTGAAGGTTCAATGGGATGAAGCAGCAACAATTCCAAGACCAGAAAGAGTTTCTTCATGGGAGATAGAACCTTTTATAGCATCTCCTACTTTGAATGTCACTCAAACATCAGTGAAAAGCAAAAGATCTAGGCCTTCCGATGTTTCATCTTGCGGTTTTTGGTATCCCGGATCTTCCCAAGCTCACGAGCATACCCAATTAACCGGTGCTGTCGAACTCCAAGGCAAGGAGAGTCAGATTGTAAGCTCTAGAGTCTTGGTAGAAGGAATTTGGCCTAATTCACCACATTTGAATGTAACTTCCAACCCTTATGCTAACACAAACATCGCATCTAGACCGAGCGATGGCCTCACGTGCGACCGAGTAGAAGACGCGAAAATGAACGAGAATCCTCTTGATTGTTGGTTATTTGGAGTTAATTTGAACAACAAAAACAAATCTTGCAATGTTAATTCATGTTTAGAAAAAGAACTTGGAGGTCCAAGTTTAAACATTGTTACTACAAGTGGTCCCAAAGAATCTATTATCCTTACCACCAATGCATGTGAAACTGAAAAGGTTCAGAGTCCTAACTATTCACTGTCCAACAAAGGGCAGCAGAAGAAAATAATTTCTGATGCATCACCAAATGAATGGCAGAACAAGCTGGCTACTGTACCATCCATGAGAACAAGGACTAAGGTGCAAATGGAAGGTGTAGCTGTTGGTCGTGCACTTGACTTAACCATGTTAAATGGTTATGATGAACTCATAGATGAAGTTGAGAAATTATTTGATATTAAAGGAGAGTTACGTTCCCAAAACAAATGGAGAGTTACTTTCACTGATAATGAAAATGACATGATGCTTGTCGGTGATGATCCATGGCCGGAATTTTGCAACATGGTAAAGAAGATTTTCATTTGTTCAAATGAGGAATTAAAGAAAATGAAATGCAAGTTACCTAATTCTTCATTAGAGATTGAAGAGACTTTGTTGAGTCTAGATTCACAGAATAGGGATGAGAATCAACAAATTCATGTGACTTAA

Protein sequence

>MsaT041940.1

MAHLECNLRAPGGSSQQEKGVKNDDLYEELWKLCAGPLVDVPNTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKILCRVVNIQLLAEQETDEIYACVALLPESDQTEPVDPDPNPSDSPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTPATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGENGQLRVGVRRIAKQHSPMPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRTSQFIVGLNKYLEAVNNHKFSVGMRFKMRFEGEDSPERRFSGTIVGVGDVSAGWSNSHWRSLKVQWDEAATIPRPERVSSWEIEPFIASPTLNVTQTSVKSKRSRPSDVSSCGFWYPGSSQAHEHTQLTGAVELQGKESQIVSSRVLVEGIWPNSPHLNVTSNPYANTNIASRPSDGLTCDRVEDAKMNENPLDCWLFGVNLNNKNKSCNVNSCLEKELGGPSLNIVTTSGPKESIILTTNACETEKVQSPNYSLSNKGQQKKIISDASPNEWQNKLATVPSMRTRTKVQMEGVAVGRALDLTMLNGYDELIDEVEKLFDIKGELRSQNKWRVTFTDNENDMMLVGDDPWPEFCNMVKKIFICSNEELKKMKCKLPNSSLEIEETLLSLDSQNRDENQQIHVT*