AlfalfaGEDB | MsaG042053

M. sativa ssp. caerulea / MsaG042053

KEGG: K13425
GO: GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009889 GO:0010033 GO:0010150 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042053	XP_013444773.1	94.170	223	8	2	2	219	116	338	1.51e-128	376

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042053	sp\|O04609\|WRK22_ARATH	57.672	189	61	4	17	198	105	281	3.31e-64	204

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042053	tr\|A0A072TPN3\|A0A072TPN3_MEDTR	94.170	223	8	2	2	219	116	338	7.23e-129	376

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG042053	TF	WRKY

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG042053	0.881497	4.852747e-70	9.392804e-67
MsaG000032	MsaG042053	0.814122	3.123860e-51	5.906704e-49
MsaG000048	MsaG042053	0.862544	9.311210e-64	7.982478e-61
MsaG000069	MsaG042053	0.853754	3.732547e-61	2.306472e-58
MsaG000137	MsaG042053	0.832834	1.365187e-55	4.288516e-53
MsaG000202	MsaG042053	0.896473	8.069917e-76	3.372793e-72
MsaG000219	MsaG042053	0.816826	7.866891e-52	1.593065e-49
MsaG000253	MsaG042053	0.855956	8.634806e-62	5.774837e-59
MsaG000286	MsaG042053	0.863892	3.579786e-64	3.235889e-61
MsaG000413	MsaG042053	0.865848	8.784924e-65	8.585480e-62

Showing 1 to 10 of 965 entries

Previous1 2 3 4 5…97Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042053	MtrunA17_Chr8g0348311	94.170	223	8	2	2	219	116	338	1.39e-132	376
MsaG042053	MtrunA17_Chr7g0248691	58.571	210	61	5	10	214	124	312	5.61e-75	229
MsaG042053	MtrunA17_Chr1g0202461	64.912	114	33	3	17	125	237	348	1.41e-42	147
MsaG042053	MtrunA17_Chr2g0293481	43.655	197	76	6	21	187	238	429	2.04e-41	146
MsaG042053	MtrunA17_Chr8g0387501	63.043	92	25	2	41	128	130	216	1.41e-33	121
MsaG042053	MtrunA17_Chr7g0270051	50.862	116	39	4	20	120	24	136	5.83e-30	112
MsaG042053	MtrunA17_Chr2g0284321	53.608	97	34	3	14	100	4	99	1.45e-27	104
MsaG042053	MtrunA17_Chr8g0379461	47.115	104	38	3	21	108	46	148	1.61e-24	97.1
MsaG042053	MtrunA17_Chr5g0401821	55.422	83	28	2	20	93	174	256	3.98e-23	94.0
MsaG042053	MtrunA17_Chr2g0289181	48.352	91	40	3	30	115	4	92	6.71e-23	92.4

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042053	AT4G01250.1	57.672	189	61	4	17	198	105	281	3.37e-65	204
MsaG042053	AT5G52830.1	54.902	153	50	5	19	164	143	283	2.94e-45	154
MsaG042053	AT1G30650.1	42.593	216	86	8	21	205	188	396	2.00e-38	138
MsaG042053	AT2G34830.1	42.857	210	83	6	17	189	179	388	7.08e-37	134
MsaG042053	AT2G34830.2	42.857	210	83	6	17	189	188	397	1.02e-36	133
MsaG042053	AT4G23550.1	59.130	115	38	3	26	135	125	235	4.40e-35	126
MsaG042053	AT5G45050.1	58.065	93	32	2	19	104	1156	1248	4.57e-30	117
MsaG042053	AT5G45050.2	58.065	93	32	2	19	104	1128	1220	4.70e-30	117
MsaG042053	AT5G45050.4	58.065	93	32	2	19	104	1017	1109	5.11e-30	117
MsaG042053	AT1G29280.1	47.009	117	41	4	7	108	31	141	1.27e-27	105

Showing 1 to 10 of 82 entries

Previous1 2 3 4 5…9Next

Find 35 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTAGCATCATCTGG+TGG	0.715149	8:-15998035	MsaT042053.1:CDS
AATGATGAATGATGATGATG+AGG	0.613568	8:-15998138	MsaT042053.1:CDS
AATTTCTGTGAGTTGGAGCA+GGG	0.599997	8:+15998333	None:intergenic
ACTCACAGAAATTCTCTTGC+TGG	0.378623	8:-15998323	MsaT042053.1:CDS
AGAAGCTCTCATCAGACATA+TGG	0.410207	8:-15998954	MsaT042053.1:CDS
AGAGCAATACTAGCAGCAAA+AGG	0.441287	8:+15997996	None:intergenic
AGTATTGCTCTTCCTGCTTG+TGG	0.519938	8:-15997984	MsaT042053.1:CDS
ATATGGGCATGGAGGAAATA+TGG	0.384293	8:-15998937	MsaT042053.1:CDS
ATCAGAAGCTGAAGAGGAAG+AGG	0.515216	8:-15998210	MsaT042053.1:CDS
ATCCACATCAGAAGCTGAAG+AGG	0.543617	8:-15998216	MsaT042053.1:CDS

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	15997974	15999665	15997974	ID=MsaG042053
Chr8	mRNA	15997974	15999665	15997974	ID=MsaT042053.1;Parent=MsaG042053
Chr8	exon	15997974	15998454	15997974	ID=MsaT042053.1.exon4;Parent=MsaT042053.1
Chr8	CDS	15997974	15998454	15997974	ID=cds.MsaT042053.1;Parent=MsaT042053.1
Chr8	exon	15998904	15999014	15998904	ID=MsaT042053.1.exon3;Parent=MsaT042053.1
Chr8	CDS	15998904	15999014	15998904	ID=cds.MsaT042053.1;Parent=MsaT042053.1
Chr8	exon	15999259	15999320	15999259	ID=MsaT042053.1.exon2;Parent=MsaT042053.1
Chr8	CDS	15999259	15999320	15999259	ID=cds.MsaT042053.1;Parent=MsaT042053.1
Chr8	exon	15999660	15999665	15999660	ID=MsaT042053.1.exon1;Parent=MsaT042053.1
Chr8	CDS	15999660	15999665	15999660	ID=cds.MsaT042053.1;Parent=MsaT042053.1

Gene Sequence

>MsaT042053.1

ATGGAGCTTCTGGTTAATAACAAGCTTCATCATGCTGCTTCTGCCATCACCCCAAGATCCAAAAGAAGGAAGATTCAGCATAAGAAGGTTTGTGAAGTGCAAGCTGAGAAGCTCTCATCAGACATATGGGCATGGAGGAAATATGGTCAAAAACCAATCAAAGGGTCACCATATCCAAGATGTAGCAGTTCAAAAGGATGTTCAGCTAAGAAACAAGTTGAGAGGAACAAATCAGACCCATCAATGTTCATAGTTACATACACTGGTGAACACAGTCACCCTGCTCCAACTCACAGAAATTCTCTTGCTGGTTCAACAAGACAGAAGCCATTGTCACCACAAACTGACACTGCTGAAGACTCTTCCCAACAACCTTTTACAAAACAAGTTTCATCATCCACATCAGAAGCTGAAGAGGAAGAGGCTACAACACTCTTAAGTGTAAAGTCAGAGAGCAAAGATGATTTGGAAGAAATGATGAATGATGATGATGAGGAAAATGAATTTGAGTTATCTGATATGGTTGTAACAGATGATTTCTTTGAAGGTTTAGATGAATTGACAGGTTTTGCTGGAAAAACAGTAGCATCATCTGGTGGTGACTGTTTTGGTGACCCTTTTGCTGCTAGTATTGCTCTTCCTGCTTGTGGTGGCCAATGA

Protein sequence

>MsaT042053.1

MELLVNNKLHHAASAITPRSKRRKIQHKKVCEVQAEKLSSDIWAWRKYGQKPIKGSPYPRCSSSKGCSAKKQVERNKSDPSMFIVTYTGEHSHPAPTHRNSLAGSTRQKPLSPQTDTAEDSSQQPFTKQVSSSTSEAEEEEATTLLSVKSESKDDLEEMMNDDDEENEFELSDMVVTDDFFEGLDELTGFAGKTVASSGGDCFGDPFAASIALPACGGQ*