AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG042053


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042053 MtrunA17_Chr8g0348311 94.170 223 8 2 2 219 116 338 1.39e-132 376
MsaG042053 MtrunA17_Chr7g0248691 58.571 210 61 5 10 214 124 312 5.61e-75 229
MsaG042053 MtrunA17_Chr1g0202461 64.912 114 33 3 17 125 237 348 1.41e-42 147
MsaG042053 MtrunA17_Chr2g0293481 43.655 197 76 6 21 187 238 429 2.04e-41 146
MsaG042053 MtrunA17_Chr8g0387501 63.043 92 25 2 41 128 130 216 1.41e-33 121
MsaG042053 MtrunA17_Chr7g0270051 50.862 116 39 4 20 120 24 136 5.83e-30 112
MsaG042053 MtrunA17_Chr2g0284321 53.608 97 34 3 14 100 4 99 1.45e-27 104
MsaG042053 MtrunA17_Chr8g0379461 47.115 104 38 3 21 108 46 148 1.61e-24 97.1
MsaG042053 MtrunA17_Chr5g0401821 55.422 83 28 2 20 93 174 256 3.98e-23 94.0
MsaG042053 MtrunA17_Chr2g0289181 48.352 91 40 3 30 115 4 92 6.71e-23 92.4
MsaG042053 MtrunA17_Chr2g0319961 68.852 61 15 1 40 96 80 140 1.03e-22 92.8
MsaG042053 MtrunA17_Chr4g0071521 56.627 83 27 2 20 93 220 302 1.78e-22 93.2
MsaG042053 MtrunA17_Chr1g0147881 53.659 82 29 2 21 93 238 319 1.20e-21 91.3
MsaG042053 MtrunA17_Chr4g0053281 54.878 82 28 3 21 93 242 323 1.10e-20 88.6
MsaG042053 MtrunA17_Chr1g0184691 61.404 57 18 1 41 93 294 350 2.93e-18 82.0
MsaG042053 MtrunA17_Chr7g0228941 51.667 60 25 1 38 93 50 109 8.13e-17 73.6
MsaG042053 MtrunA17_Chr1g0194481 46.667 75 34 3 41 110 159 232 8.97e-17 77.4
MsaG042053 MtrunA17_Chr7g0218081 38.889 108 60 3 17 119 386 492 2.60e-16 77.0
MsaG042053 MtrunA17_Chr4g0051881 52.174 69 25 3 41 105 179 243 4.91e-16 75.5
MsaG042053 MtrunA17_Chr3g0139021 44.048 84 34 3 21 93 290 371 8.49e-16 75.1
MsaG042053 MtrunA17_Chr7g0270191 44.186 86 42 2 41 120 146 231 3.05e-15 72.8
MsaG042053 MtrunA17_Chr5g0418191 40.594 101 40 4 16 96 279 379 1.65e-14 71.6
MsaG042053 MtrunA17_Chr5g0443131 53.333 60 23 2 41 96 158 216 3.59e-14 70.1
MsaG042053 MtrunA17_Chr4g0001361 44.595 74 37 1 38 107 160 233 4.59e-14 69.7
MsaG042053 MtrunA17_Chr7g0270831 45.205 73 36 1 38 106 214 286 6.44e-14 70.1
MsaG042053 MtrunA17_Chr4g0051181 38.636 88 47 2 14 97 220 304 7.51e-14 69.7
MsaG042053 MtrunA17_Chr7g0238921 32.727 165 95 5 24 175 106 267 1.12e-13 68.6
MsaG042053 MtrunA17_Chr4g0042831 35.345 116 65 4 13 119 249 363 1.29e-13 68.9
MsaG042053 MtrunA17_Chr2g0333851 36.275 102 58 3 38 133 167 267 1.80e-13 68.2
MsaG042053 MtrunA17_Chr4g0075201 49.206 63 28 1 38 96 265 327 1.83e-13 68.6
MsaG042053 MtrunA17_Chr2g0294231 48.333 60 26 2 41 96 204 262 2.07e-13 68.2
MsaG042053 MtrunA17_Chr5g0418781 52.632 57 22 2 41 93 125 180 2.94e-13 67.0
MsaG042053 MtrunA17_Chr7g0263531 49.153 59 27 1 41 96 362 420 4.54e-13 67.4
MsaG042053 MtrunA17_Chr7g0263531 42.667 75 39 2 35 106 184 257 8.55e-11 60.8
MsaG042053 MtrunA17_Chr3g0101131 37.624 101 45 4 18 101 380 479 6.42e-13 67.0
MsaG042053 MtrunA17_Chr2g0288871 46.032 63 30 1 38 96 303 365 8.23e-13 67.0
MsaG042053 MtrunA17_Chr3g0099641 41.096 73 39 1 38 106 249 321 1.26e-12 66.2
MsaG042053 MtrunA17_Chr4g0025051 42.667 75 39 1 36 106 331 405 2.01e-12 65.9
MsaG042053 MtrunA17_Chr5g0445311 46.154 65 30 2 41 101 365 428 2.52e-12 65.5
MsaG042053 MtrunA17_Chr4g0068541 44.262 61 29 2 41 97 209 268 4.94e-12 64.3
MsaG042053 MtrunA17_Chr8g0383251 46.032 63 29 2 38 96 106 167 5.44e-12 62.4
MsaG042053 MtrunA17_Chr2g0302391 35.849 106 59 2 5 106 181 281 5.77e-12 64.3
MsaG042053 MtrunA17_Chr7g0216891 36.264 91 51 2 20 106 202 289 6.86e-12 64.3
MsaG042053 MtrunA17_Chr7g0249311 36.264 91 49 4 16 101 370 456 7.02e-12 64.3
MsaG042053 MtrunA17_Chr4g0025061 40.000 75 41 1 36 106 356 430 8.09e-12 63.9
MsaG042053 MtrunA17_Chr1g0150801 51.724 58 23 2 41 94 103 159 8.62e-12 61.2
MsaG042053 MtrunA17_Chr2g0322391 43.750 64 32 1 37 96 346 409 1.68e-11 63.2
MsaG042053 MtrunA17_Chr7g0243891 39.535 86 38 3 41 113 375 459 2.04e-11 62.8
MsaG042053 MtrunA17_Chr3g0079691 46.154 65 30 2 41 101 496 559 2.24e-11 62.8
MsaG042053 MtrunA17_Chr7g0249301 40.000 85 42 4 22 99 272 354 2.43e-11 62.4
MsaG042053 MtrunA17_Chr1g0189391 41.237 97 42 6 27 109 83 178 2.72e-11 62.0
MsaG042053 MtrunA17_Chr3g0136961 37.778 90 51 2 41 126 139 227 2.78e-11 61.6
MsaG042053 MtrunA17_Chr3g0129321 43.750 64 31 2 37 96 115 177 4.12e-11 60.1
MsaG042053 MtrunA17_Chr3g0106491 42.857 77 40 2 41 114 366 441 4.46e-11 61.6
MsaG042053 MtrunA17_Chr1g0150281 43.860 57 28 1 41 93 141 197 4.84e-11 60.8
MsaG042053 MtrunA17_Chr3g0126391 33.333 120 69 4 41 154 134 248 5.94e-11 60.8
MsaG042053 MtrunA17_Chr4g0004911 45.161 62 31 1 41 99 337 398 6.18e-11 61.2
MsaG042053 MtrunA17_Chr7g0224801 43.860 57 29 1 41 94 94 150 6.60e-11 58.9
MsaG042053 MtrunA17_Chr5g0447701 44.928 69 33 2 38 102 250 317 6.83e-11 60.8
MsaG042053 MtrunA17_Chr1g0150271 50.000 60 26 2 41 96 102 161 9.69e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042053 AT4G01250.1 57.672 189 61 4 17 198 105 281 3.37e-65 204
MsaG042053 AT5G52830.1 54.902 153 50 5 19 164 143 283 2.94e-45 154
MsaG042053 AT1G30650.1 42.593 216 86 8 21 205 188 396 2.00e-38 138
MsaG042053 AT2G34830.1 42.857 210 83 6 17 189 179 388 7.08e-37 134
MsaG042053 AT2G34830.2 42.857 210 83 6 17 189 188 397 1.02e-36 133
MsaG042053 AT4G23550.1 59.130 115 38 3 26 135 125 235 4.40e-35 126
MsaG042053 AT5G45050.1 58.065 93 32 2 19 104 1156 1248 4.57e-30 117
MsaG042053 AT5G45050.2 58.065 93 32 2 19 104 1128 1220 4.70e-30 117
MsaG042053 AT5G45050.4 58.065 93 32 2 19 104 1017 1109 5.11e-30 117
MsaG042053 AT1G29280.1 47.009 117 41 4 7 108 31 141 1.27e-27 105
MsaG042053 AT3G58710.1 46.957 115 39 4 17 109 38 152 3.39e-25 99.8
MsaG042053 AT3G58710.2 46.087 115 39 3 18 109 37 151 1.70e-24 97.8
MsaG042053 AT2G23320.1 54.217 83 29 3 20 93 215 297 2.57e-21 90.1
MsaG042053 AT2G30590.1 65.517 58 16 1 41 94 314 371 4.76e-20 87.4
MsaG042053 AT4G31550.2 51.220 82 31 2 21 93 221 302 9.34e-20 86.3
MsaG042053 AT4G24240.1 53.012 83 30 2 20 93 256 338 1.19e-19 86.3
MsaG042053 AT4G31550.1 51.220 82 31 2 21 93 222 303 2.78e-19 84.7
MsaG042053 AT3G04670.1 51.807 83 31 2 20 93 237 319 6.22e-19 84.0
MsaG042053 AT5G28650.1 51.807 83 31 2 20 93 237 319 6.74e-19 84.0
MsaG042053 AT5G45260.1 48.837 86 37 3 28 107 1197 1281 9.17e-19 84.7
MsaG042053 AT2G24570.1 50.000 82 32 2 21 93 219 300 8.18e-18 80.9
MsaG042053 AT5G46350.1 48.611 72 30 3 41 106 184 254 6.40e-16 75.5
MsaG042053 AT1G29860.1 54.098 61 23 2 41 97 137 196 9.13e-16 74.7
MsaG042053 AT4G18170.1 53.226 62 24 2 41 98 173 233 9.84e-16 75.1
MsaG042053 AT1G69310.3 56.604 53 22 1 41 93 148 199 2.27e-15 73.6
MsaG042053 AT5G49520.1 52.542 59 25 1 41 96 222 280 3.00e-15 73.9
MsaG042053 AT2G04880.1 49.315 73 29 2 38 102 305 377 4.40e-15 73.9
MsaG042053 AT2G04880.2 49.315 73 29 2 38 102 281 353 4.43e-15 73.9
MsaG042053 AT3G62340.1 49.398 83 32 4 23 96 96 177 4.47e-15 72.8
MsaG042053 AT2G21900.1 49.180 61 26 2 41 97 110 169 1.96e-14 69.7
MsaG042053 AT1G80840.1 43.662 71 36 1 41 107 147 217 8.84e-14 69.3
MsaG042053 AT1G62300.1 49.206 63 28 1 38 96 310 372 1.31e-13 69.7
MsaG042053 AT4G04450.2 43.836 73 37 1 38 106 196 268 1.33e-13 69.3
MsaG042053 AT4G04450.1 43.836 73 37 1 38 106 290 362 1.37e-13 69.3
MsaG042053 AT1G68150.1 43.662 71 36 1 45 111 240 310 1.49e-13 68.9
MsaG042053 AT4G22070.4 49.206 63 28 1 38 96 295 357 1.80e-13 69.3
MsaG042053 AT4G22070.3 49.206 63 28 1 38 96 295 357 1.80e-13 69.3
MsaG042053 AT4G22070.2 49.206 63 28 1 38 96 295 357 1.80e-13 69.3
MsaG042053 AT4G22070.1 49.206 63 28 1 38 96 295 357 1.80e-13 69.3
MsaG042053 AT1G69310.4 52.632 57 22 2 41 93 148 203 3.39e-13 67.4
MsaG042053 AT1G69310.2 52.632 57 22 2 41 93 148 203 3.39e-13 67.4
MsaG042053 AT1G69310.1 52.632 57 22 2 41 93 148 203 3.39e-13 67.4
MsaG042053 AT1G13960.2 46.774 62 30 1 38 96 254 315 4.10e-13 67.8
MsaG042053 AT1G13960.1 46.774 62 30 1 38 96 407 468 6.22e-13 67.4
MsaG042053 AT2G03340.1 44.776 67 34 1 38 101 413 479 7.72e-13 67.4
MsaG042053 AT5G26170.1 44.595 74 33 3 24 93 100 169 8.97e-13 64.7
MsaG042053 AT2G47260.1 48.333 60 26 2 41 96 175 233 1.06e-12 66.6
MsaG042053 AT5G15130.1 38.710 93 49 3 21 106 206 297 1.09e-12 67.0
MsaG042053 AT5G15130.2 38.710 93 49 3 21 106 164 255 1.15e-12 66.6
MsaG042053 AT4G39410.1 39.394 99 51 4 22 112 203 300 2.41e-12 65.1
MsaG042053 AT2G25000.2 46.667 60 28 1 41 96 104 163 3.42e-12 63.9
MsaG042053 AT2G25000.4 46.667 60 28 1 41 96 104 163 3.42e-12 63.9
MsaG042053 AT4G26440.1 44.578 83 38 3 41 115 373 455 4.72e-12 65.1
MsaG042053 AT1G80590.1 28.402 169 106 4 2 155 38 206 5.43e-12 63.5
MsaG042053 AT4G26640.5 37.634 93 55 1 12 101 177 269 5.77e-12 64.7
MsaG042053 AT4G26640.6 37.634 93 55 1 12 101 177 269 5.77e-12 64.7
MsaG042053 AT4G26640.4 37.634 93 55 1 12 101 177 269 5.77e-12 64.7
MsaG042053 AT4G26640.3 37.634 93 55 1 12 101 177 269 5.77e-12 64.7
MsaG042053 AT2G25000.3 46.667 60 28 1 41 96 126 185 5.79e-12 63.5
MsaG042053 AT4G26640.1 37.634 93 55 1 12 101 281 373 6.61e-12 64.7
MsaG042053 AT4G26640.2 37.634 93 55 1 12 101 353 445 6.90e-12 64.7
MsaG042053 AT4G26640.7 37.634 93 55 1 12 101 313 405 7.38e-12 64.3
MsaG042053 AT2G25000.1 46.667 60 28 1 41 96 147 206 7.89e-12 63.5
MsaG042053 AT4G31800.2 45.000 60 29 1 41 96 112 171 8.58e-12 63.2
MsaG042053 AT4G31800.1 45.000 60 29 1 41 96 177 236 9.68e-12 63.5
MsaG042053 AT5G07100.2 49.206 63 27 2 41 99 142 203 1.23e-11 62.4
MsaG042053 AT5G07100.4 49.206 63 27 2 41 99 142 203 1.23e-11 62.4
MsaG042053 AT5G07100.5 49.206 63 27 2 41 99 142 203 1.23e-11 62.4
MsaG042053 AT5G07100.3 49.206 63 27 2 41 99 142 203 1.23e-11 62.4
MsaG042053 AT4G01720.1 45.902 61 29 1 40 96 239 299 1.30e-11 63.5
MsaG042053 AT2G38470.1 36.893 103 52 3 41 130 363 465 1.43e-11 63.5
MsaG042053 AT1G18860.1 40.000 80 41 2 21 96 223 299 1.70e-11 63.5
MsaG042053 AT5G07100.1 49.206 63 27 2 41 99 235 296 2.08e-11 62.4
MsaG042053 AT2G37260.1 45.349 86 33 5 19 93 323 405 2.33e-11 62.8
MsaG042053 AT3G01080.2 39.362 94 42 4 18 96 310 403 2.35e-11 62.8
MsaG042053 AT3G01080.1 39.362 94 42 4 18 96 272 365 2.85e-11 62.4
MsaG042053 AT2G37260.2 45.349 86 33 5 19 93 241 323 2.92e-11 62.4
MsaG042053 AT2G37260.3 45.349 86 33 5 19 93 243 325 2.96e-11 62.4
MsaG042053 AT1G64000.1 39.437 71 40 1 41 108 115 185 4.84e-11 60.1
MsaG042053 AT2G40750.1 40.260 77 37 3 22 92 137 210 5.71e-11 61.6
MsaG042053 AT5G13080.1 46.552 58 26 2 41 94 68 124 8.02e-11 58.5
MsaG042053 AT5G56270.1 45.161 62 31 1 41 99 488 549 9.56e-11 61.2

Find 35 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTTGAGTTATCTGATA+TGG 0.292666 8:-15998111 MsaT042053.1:CDS
GTCAGAGAGCAAAGATGATT+TGG 0.293031 8:-15998165 MsaT042053.1:CDS
TCATCTGGTGGTGACTGTTT+TGG 0.371167 8:-15998023 MsaT042053.1:CDS
ACTCACAGAAATTCTCTTGC+TGG 0.378623 8:-15998323 MsaT042053.1:CDS
ATATGGGCATGGAGGAAATA+TGG 0.384293 8:-15998937 MsaT042053.1:CDS
GGATATGGTGACCCTTTGAT+TGG 0.396288 8:+15998907 None:intergenic
AGAAGCTCTCATCAGACATA+TGG 0.410207 8:-15998954 MsaT042053.1:CDS
GTAACAGATGATTTCTTTGA+AGG 0.418155 8:-15998086 MsaT042053.1:CDS
AGAGCAATACTAGCAGCAAA+AGG 0.441287 8:+15997996 None:intergenic
GAATTTCTGTGAGTTGGAGC+AGG 0.445905 8:+15998332 None:intergenic
TCTTCAGCAGTGTCAGTTTG+TGG 0.454123 8:+15998275 None:intergenic
GCAAGAGAATTTCTGTGAGT+TGG 0.458253 8:+15998326 None:intergenic
TACAGATGTAGCAGTTCAAA+AGG 0.483623 8:-15998437 MsaT042053.1:intron
GAAGGTTTAGATGAATTGAC+AGG 0.487690 8:-15998068 MsaT042053.1:CDS
TAGGAAGATTCAGCATAAGA+AGG 0.490182 8:-15998995 MsaT042053.1:CDS
TTCCTCTTCAGCTTCTGATG+TGG 0.499055 8:+15998214 None:intergenic
ATCAGAAGCTGAAGAGGAAG+AGG 0.515216 8:-15998210 MsaT042053.1:CDS
TATGTAACTATGAACATTGA+TGG 0.516786 8:+15998374 None:intergenic
AGTATTGCTCTTCCTGCTTG+TGG 0.519938 8:-15997984 MsaT042053.1:CDS
GAAGCTCTCATCAGACATAT+GGG 0.541248 8:-15998953 MsaT042053.1:CDS
ATCCACATCAGAAGCTGAAG+AGG 0.543617 8:-15998216 MsaT042053.1:CDS
TCACCCCAAGATCCAAAAGA+AGG 0.569923 8:-15999258 MsaT042053.1:intron
GAGCAATACTAGCAGCAAAA+GGG 0.577414 8:+15997997 None:intergenic
ATTGCTCTTCCTGCTTGTGG+TGG 0.580832 8:-15997981 MsaT042053.1:CDS
CATCATTGGCCACCACAAGC+AGG 0.589284 8:+15997972 None:intergenic
AATTTCTGTGAGTTGGAGCA+GGG 0.599997 8:+15998333 None:intergenic
TCAAAGGGTCACCATATCCA+AGG 0.606385 8:-15998903 MsaT042053.1:intron
AATGATGAATGATGATGATG+AGG 0.613568 8:-15998138 MsaT042053.1:CDS
GTGTCAGTTTGTGGTGACAA+TGG 0.619638 8:+15998284 None:intergenic
ATGTAACTATGAACATTGAT+GGG 0.626118 8:+15998375 None:intergenic
ATGTTCATAGTTACATACAC+TGG 0.626605 8:-15998368 MsaT042053.1:CDS
CAGCTAAGAAACAAGTTGAG+AGG 0.631582 8:-15998409 MsaT042053.1:CDS
TCTCATCAGACATATGGGCA+TGG 0.674402 8:-15998948 MsaT042053.1:CDS
CATCAGACATATGGGCATGG+AGG 0.678030 8:-15998945 MsaT042053.1:CDS
AAAACAGTAGCATCATCTGG+TGG 0.715149 8:-15998035 MsaT042053.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 15997974 15999665 15997974 ID=MsaG042053
Chr8 mRNA 15997974 15999665 15997974 ID=MsaT042053.1;Parent=MsaG042053
Chr8 exon 15997974 15998454 15997974 ID=MsaT042053.1.exon4;Parent=MsaT042053.1
Chr8 CDS 15997974 15998454 15997974 ID=cds.MsaT042053.1;Parent=MsaT042053.1
Chr8 exon 15998904 15999014 15998904 ID=MsaT042053.1.exon3;Parent=MsaT042053.1
Chr8 CDS 15998904 15999014 15998904 ID=cds.MsaT042053.1;Parent=MsaT042053.1
Chr8 exon 15999259 15999320 15999259 ID=MsaT042053.1.exon2;Parent=MsaT042053.1
Chr8 CDS 15999259 15999320 15999259 ID=cds.MsaT042053.1;Parent=MsaT042053.1
Chr8 exon 15999660 15999665 15999660 ID=MsaT042053.1.exon1;Parent=MsaT042053.1
Chr8 CDS 15999660 15999665 15999660 ID=cds.MsaT042053.1;Parent=MsaT042053.1
Gene Sequence

>MsaT042053.1

ATGGAGCTTCTGGTTAATAACAAGCTTCATCATGCTGCTTCTGCCATCACCCCAAGATCCAAAAGAAGGAAGATTCAGCATAAGAAGGTTTGTGAAGTGCAAGCTGAGAAGCTCTCATCAGACATATGGGCATGGAGGAAATATGGTCAAAAACCAATCAAAGGGTCACCATATCCAAGATGTAGCAGTTCAAAAGGATGTTCAGCTAAGAAACAAGTTGAGAGGAACAAATCAGACCCATCAATGTTCATAGTTACATACACTGGTGAACACAGTCACCCTGCTCCAACTCACAGAAATTCTCTTGCTGGTTCAACAAGACAGAAGCCATTGTCACCACAAACTGACACTGCTGAAGACTCTTCCCAACAACCTTTTACAAAACAAGTTTCATCATCCACATCAGAAGCTGAAGAGGAAGAGGCTACAACACTCTTAAGTGTAAAGTCAGAGAGCAAAGATGATTTGGAAGAAATGATGAATGATGATGATGAGGAAAATGAATTTGAGTTATCTGATATGGTTGTAACAGATGATTTCTTTGAAGGTTTAGATGAATTGACAGGTTTTGCTGGAAAAACAGTAGCATCATCTGGTGGTGACTGTTTTGGTGACCCTTTTGCTGCTAGTATTGCTCTTCCTGCTTGTGGTGGCCAATGA

Protein sequence

>MsaT042053.1

MELLVNNKLHHAASAITPRSKRRKIQHKKVCEVQAEKLSSDIWAWRKYGQKPIKGSPYPRCSSSKGCSAKKQVERNKSDPSMFIVTYTGEHSHPAPTHRNSLAGSTRQKPLSPQTDTAEDSSQQPFTKQVSSSTSEAEEEEATTLLSVKSESKDDLEEMMNDDDEENEFELSDMVVTDDFFEGLDELTGFAGKTVASSGGDCFGDPFAASIALPACGGQ*