AlfalfaGEDB | MsaG042060

M. sativa ssp. caerulea / MsaG042060

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042060	XP_013444782.1	96.997	333	10	0	1	333	1	333	0.0	660

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042060	sp\|C0SVG5\|RVE5_ARATH	55.806	310	119	8	1	305	1	297	4.42e-107	318

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042060	tr\|A0A072TN18\|A0A072TN18_MEDTR	96.997	333	10	0	1	333	1	333	0.0	660

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TFs/TRs:

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Gene ID	Type	Classification
MsaG042060	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042060	MtrunA17_Chr8g0348391	96.997	333	10	0	1	333	1	333	0.0	660
MsaG042060	MtrunA17_Chr1g0181771	53.992	263	95	5	52	308	35	277	9.55e-85	258
MsaG042060	MtrunA17_Chr6g0469431	65.405	185	49	4	1	185	1	170	6.22e-74	228
MsaG042060	MtrunA17_Chr3g0109791	40.884	181	90	3	24	187	17	197	2.24e-26	107
MsaG042060	MtrunA17_Chr6g0469441	75.439	57	14	0	242	298	23	79	1.49e-25	98.2
MsaG042060	MtrunA17_Chr6g0481061	54.255	94	35	2	53	138	46	139	1.62e-25	106
MsaG042060	MtrunA17_Chr5g0433851	44.186	172	70	6	49	201	28	192	2.89e-24	102
MsaG042060	MtrunA17_Chr7g0276421	59.459	74	30	0	41	114	3	76	4.33e-24	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042060	AT4G01280.1	55.844	308	121	6	1	305	1	296	6.24e-109	320
MsaG042060	AT4G01280.2	55.806	310	119	8	1	305	1	297	4.49e-108	318
MsaG042060	AT5G52660.2	53.968	315	118	5	14	312	9	312	3.95e-103	306
MsaG042060	AT5G52660.1	53.968	315	117	5	14	312	9	311	6.31e-103	305
MsaG042060	AT1G01520.1	53.035	313	112	9	1	306	1	285	6.39e-102	301
MsaG042060	AT1G01520.3	53.094	307	109	9	1	300	1	279	2.49e-98	292
MsaG042060	AT3G09600.1	53.125	288	104	7	28	306	11	276	1.97e-89	270
MsaG042060	AT3G09600.7	53.125	288	104	7	28	306	11	276	1.97e-89	270
MsaG042060	AT1G01520.2	52.098	286	102	9	1	279	1	258	9.08e-87	262
MsaG042060	AT1G01520.4	52.098	286	102	9	1	279	1	258	9.08e-87	262

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Find 85 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGTGGTGTTGGATT+AGG	0.259526	8:-16139954	None:intergenic
AAAGCAGGTGAAGGTTGCAA+TGG	0.602544	8:-16142902	None:intergenic
AAATGCCGTTCTGTCTACTT+AGG	0.437086	8:+16145341	MsaT042060.1:CDS
AACAAACCTGTAGTCACTTG+TGG	0.599352	8:-16143037	None:intergenic
AACACCCTAAGTAGACAGAA+CGG	0.678268	8:-16145346	None:intergenic
AACCCTAATCCAACACCACA+AGG	0.612459	8:+16139951	MsaT042060.1:CDS
AACCTTGTGGTGTTGGATTA+GGG	0.281198	8:-16139953	None:intergenic
AACGGTAGATGCTGCCGCGG+CGG	0.625748	8:-16140054	None:intergenic
AACTTTGCCTTCTCGCAGTC+AGG	0.399115	8:-16145279	None:intergenic
AAGAAGATTGAAGCCTTTGT+TGG	0.457494	8:+16142255	MsaT042060.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	16139939	16145362	16139939	ID=MsaG042060
Chr8	mRNA	16139939	16145362	16139939	ID=MsaT042060.1;Parent=MsaG042060
Chr8	exon	16139939	16140180	16139939	ID=MsaT042060.1.exon1;Parent=MsaT042060.1
Chr8	CDS	16139939	16140180	16139939	ID=cds.MsaT042060.1;Parent=MsaT042060.1
Chr8	exon	16142239	16142296	16142239	ID=MsaT042060.1.exon2;Parent=MsaT042060.1
Chr8	CDS	16142239	16142296	16142239	ID=cds.MsaT042060.1;Parent=MsaT042060.1
Chr8	exon	16142658	16142781	16142658	ID=MsaT042060.1.exon3;Parent=MsaT042060.1
Chr8	CDS	16142658	16142781	16142658	ID=cds.MsaT042060.1;Parent=MsaT042060.1
Chr8	exon	16142873	16143052	16142873	ID=MsaT042060.1.exon4;Parent=MsaT042060.1
Chr8	CDS	16142873	16143052	16142873	ID=cds.MsaT042060.1;Parent=MsaT042060.1
Chr8	exon	16143162	16143281	16143162	ID=MsaT042060.1.exon5;Parent=MsaT042060.1
Chr8	CDS	16143162	16143281	16143162	ID=cds.MsaT042060.1;Parent=MsaT042060.1
Chr8	exon	16144719	16144828	16144719	ID=MsaT042060.1.exon6;Parent=MsaT042060.1
Chr8	CDS	16144719	16144828	16144719	ID=cds.MsaT042060.1;Parent=MsaT042060.1
Chr8	exon	16144978	16145037	16144978	ID=MsaT042060.1.exon7;Parent=MsaT042060.1
Chr8	CDS	16144978	16145037	16144978	ID=cds.MsaT042060.1;Parent=MsaT042060.1
Chr8	exon	16145255	16145362	16145255	ID=MsaT042060.1.exon8;Parent=MsaT042060.1
Chr8	CDS	16145255	16145362	16145255	ID=cds.MsaT042060.1;Parent=MsaT042060.1

Gene Sequence

>MsaT042060.1

ATGGTATCTATAAACCCTAATCCAACACCACAAGGTTTCTACTTCTTCGATCCTTCAACTATGGGTCTTCCCGGTGTTAACAATCTTCCTCCTCCACCGCCGCCGCCATCTACCACCGCCGCGGCAGCATCTACCGTTTCTGAGGATCCGAATAAGAAGATCCGGAAACCATATACGATTACTAAATCTAGAGAGAGTTGGACTGATCAGGAACATGATAAGTTTCTAGAAGCTCTTCAATTATTCGATCGTGATTGGAAGAAGATTGAAGCCTTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAGTATTTTCTCAAAGTTCAGAAGAGTGGAACAAGTGAACATGTCCCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCCAAAAATGCTCCTACTGCATCCCCCCAAGTCATGGGGCCATTGCAACCTTCACCTGCTTTTGTTGACCCAACTTACATTTATAGCACAGATTCATCATCTGTGCTTGGTACACCAGTTACTAATCTGCCTTTATCATCTCTGAATTTTAACGCTCCACCACCAACCAGTTTGCCACAAGTGACTACAGACGACACAGGATGGACTGGATCTGGACAAGCTGTTCCTGTTAATTGTTGCTATAGCAGCAGCAATGAGAAGCAAAGTAGTAAAGGGATTAATCAAGGCTGCGCGGGCAAGCCTGTTAAAGTCATGCCAGATTTTGCACAAGTATACCGCTTCATTGGCAGTGTATTTGATCCAAATTCAACCAATCAGCTACAGAGGCTAAAACAGATGGACCCAATAAATGTTGAAACGGCACTGTTGTTGATGAGAAACCTCTCCATTAATTTAAAGAGTCCTGAATTTGAGGATCATAAGAGGCTACTGTCATCATATGATCCTGACTGCGAGAAGGCAAAGTTTGCTAATCCAAGCAGCAAATCCATGACTGTAAAATCTGAAAATGCCGTTCTGTCTACTTAG

Protein sequence

>MsaT042060.1

MVSINPNPTPQGFYFFDPSTMGLPGVNNLPPPPPPPSTTAAAASTVSEDPNKKIRKPYTITKSRESWTDQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKNAPTASPQVMGPLQPSPAFVDPTYIYSTDSSSVLGTPVTNLPLSSLNFNAPPPTSLPQVTTDDTGWTGSGQAVPVNCCYSSSNEKQSSKGINQGCAGKPVKVMPDFAQVYRFIGSVFDPNSTNQLQRLKQMDPINVETALLLMRNLSINLKSPEFEDHKRLLSSYDPDCEKAKFANPSSKSMTVKSENAVLST*