Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042089 | KEH18842.1 | 91.453 | 585 | 48 | 1 | 1 | 583 | 9 | 593 | 0.0 | 1073 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042089 | sp|Q84JT7|ARID1_ARATH | 39.938 | 323 | 153 | 9 | 253 | 570 | 244 | 530 | 1.38e-63 | 221 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042089 | tr|A0A072TN61|A0A072TN61_MEDTR | 91.453 | 585 | 48 | 1 | 1 | 583 | 9 | 593 | 0.0 | 1073 |
Gene ID | Type | Classification |
---|---|---|
MsaG042089 | TR | ARID |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042089 | MtrunA17_Chr8g0348681 | 90.031 | 321 | 32 | 0 | 1 | 321 | 9 | 329 | 0.0 | 572 |
MsaG042089 | MtrunA17_Chr8g0348691 | 93.103 | 261 | 16 | 1 | 325 | 583 | 1 | 261 | 2.78e-174 | 493 |
MsaG042089 | MtrunA17_Chr7g0248041 | 42.857 | 602 | 290 | 16 | 1 | 582 | 1 | 568 | 3.32e-141 | 422 |
MsaG042089 | MtrunA17_Chr8g0387141 | 38.720 | 328 | 185 | 8 | 251 | 572 | 246 | 563 | 2.59e-61 | 213 |
MsaG042089 | MtrunA17_Chr8g0387181 | 36.538 | 364 | 185 | 9 | 250 | 572 | 237 | 595 | 2.57e-60 | 211 |
MsaG042089 | MtrunA17_Chr8g0387161 | 34.615 | 312 | 154 | 7 | 263 | 572 | 1 | 264 | 5.67e-49 | 172 |
MsaG042089 | MtrunA17_Chr1g0186191 | 34.603 | 315 | 183 | 6 | 277 | 572 | 252 | 562 | 6.51e-49 | 179 |
MsaG042089 | MtrunA17_Chr1g0186281 | 35.256 | 312 | 173 | 9 | 277 | 572 | 254 | 552 | 1.58e-48 | 177 |
MsaG042089 | MtrunA17_Chr1g0186261 | 46.591 | 176 | 92 | 2 | 397 | 572 | 382 | 555 | 1.58e-45 | 169 |
MsaG042089 | MtrunA17_Chr6g0479271 | 36.694 | 248 | 133 | 9 | 251 | 497 | 71 | 295 | 3.03e-31 | 124 |
MsaG042089 | MtrunA17_Chr7g0241681 | 35.450 | 189 | 109 | 5 | 382 | 564 | 179 | 360 | 3.02e-28 | 116 |
MsaG042089 | MtrunA17_Chr3g0086341 | 34.066 | 182 | 105 | 5 | 400 | 570 | 149 | 326 | 4.58e-22 | 100 |
MsaG042089 | MtrunA17_Chr7g0241661 | 30.890 | 191 | 119 | 4 | 380 | 564 | 169 | 352 | 6.96e-20 | 91.7 |
MsaG042089 | MtrunA17_Chr5g0420461 | 31.429 | 175 | 88 | 5 | 323 | 497 | 22 | 164 | 2.10e-16 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042089 | AT2G46040.3 | 39.938 | 323 | 153 | 9 | 253 | 570 | 244 | 530 | 1.40e-64 | 221 |
MsaG042089 | AT2G46040.1 | 39.938 | 323 | 153 | 9 | 253 | 570 | 244 | 530 | 1.40e-64 | 221 |
MsaG042089 | AT2G46040.2 | 39.938 | 323 | 153 | 9 | 253 | 570 | 258 | 544 | 1.46e-64 | 222 |
MsaG042089 | AT4G11400.2 | 34.694 | 343 | 184 | 8 | 263 | 581 | 225 | 551 | 6.91e-55 | 196 |
MsaG042089 | AT4G11400.1 | 34.694 | 343 | 184 | 8 | 263 | 581 | 225 | 551 | 6.91e-55 | 196 |
MsaG042089 | AT5G04110.1 | 38.415 | 164 | 87 | 5 | 400 | 552 | 361 | 521 | 4.32e-28 | 119 |
MsaG042089 | AT5G04110.3 | 38.415 | 164 | 87 | 5 | 400 | 552 | 361 | 521 | 4.32e-28 | 119 |
MsaG042089 | AT5G04110.2 | 38.415 | 164 | 87 | 5 | 400 | 552 | 362 | 522 | 4.35e-28 | 119 |
MsaG042089 | AT5G04110.4 | 36.735 | 147 | 79 | 5 | 400 | 535 | 361 | 504 | 1.76e-20 | 95.5 |
MsaG042089 | AT1G26580.3 | 32.124 | 193 | 110 | 6 | 396 | 570 | 65 | 254 | 6.52e-19 | 90.1 |
MsaG042089 | AT1G26580.2 | 32.124 | 193 | 110 | 6 | 396 | 570 | 131 | 320 | 1.00e-18 | 89.7 |
MsaG042089 | AT1G26580.1 | 32.124 | 193 | 110 | 6 | 396 | 570 | 131 | 320 | 1.00e-18 | 89.7 |
MsaG042089 | AT2G03470.1 | 32.240 | 183 | 105 | 6 | 399 | 570 | 122 | 296 | 9.98e-18 | 86.7 |
MsaG042089 | AT2G03470.2 | 32.240 | 183 | 105 | 6 | 399 | 570 | 121 | 295 | 1.08e-17 | 86.3 |
MsaG042089 | AT1G13880.3 | 29.843 | 191 | 112 | 7 | 402 | 579 | 131 | 312 | 2.59e-16 | 82.0 |
MsaG042089 | AT1G13880.1 | 29.843 | 191 | 112 | 7 | 402 | 579 | 130 | 311 | 2.71e-16 | 82.0 |
MsaG042089 | AT1G13880.2 | 29.843 | 191 | 112 | 7 | 402 | 579 | 140 | 321 | 2.78e-16 | 82.0 |
Find 174 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCACTTAGTATCGCTTTC+AGG | 0.202455 | 8:-16502845 | None:intergenic |
TCAGGCATCGGAACAATTTC+AGG | 0.206652 | 8:-16501283 | None:intergenic |
AGAGAGGATATGAACATTTC+TGG | 0.214678 | 8:+16503146 | MsaT042089.1:CDS |
GTCTGGTTTGATGGGGTTTA+AGG | 0.229952 | 8:+16500679 | MsaT042089.1:CDS |
CTCCGACAATCTACAATCTT+AGG | 0.256515 | 8:+16502594 | MsaT042089.1:CDS |
GACGATCAAGTTATAGTAGA+TGG | 0.274070 | 8:+16502756 | MsaT042089.1:CDS |
CGAGCATTGAACAGCAAAAT+TGG | 0.292781 | 8:+16501392 | MsaT042089.1:CDS |
TATGGTATGCTTTGCGTTGC+AGG | 0.295894 | 8:-16503240 | None:intergenic |
GTGAGTTGTGGGATTTGGTT+GGG | 0.298315 | 8:+16500540 | MsaT042089.1:CDS |
TGATGGTGAGTTGTGGGATT+TGG | 0.308604 | 8:+16500535 | MsaT042089.1:CDS |
AAATGTTCATATCCTCTCTT+TGG | 0.311222 | 8:-16503142 | None:intergenic |
AAAGTTTCCCTGCTCTTGTT+AGG | 0.326065 | 8:-16503190 | None:intergenic |
CGTTGGTTCGACGCTGAAAC+TGG | 0.334461 | 8:+16500586 | MsaT042089.1:CDS |
CATCCCTCGATTCATCATTC+TGG | 0.335310 | 8:-16500954 | None:intergenic |
TGTGCTAGGCGAAGGAGATT+TGG | 0.343980 | 8:+16502688 | MsaT042089.1:CDS |
TTAGTATCGCTTTCAGGATT+CGG | 0.348247 | 8:-16502839 | None:intergenic |
AAGGTTAAGGGTGGAGTTGA+TGG | 0.350428 | 8:+16500857 | MsaT042089.1:CDS |
GTTTGATGAGTCTGGTTTGA+TGG | 0.354024 | 8:+16500670 | MsaT042089.1:CDS |
GGTGAGTTGTGGGATTTGGT+TGG | 0.366075 | 8:+16500539 | MsaT042089.1:CDS |
CAGGGTGGGAATGTGGTGGC+TGG | 0.374383 | 8:+16500728 | MsaT042089.1:CDS |
ATGAAGACGAGAAAAGGTTC+AGG | 0.374801 | 8:+16503098 | MsaT042089.1:CDS |
GTTGGGGAAGAATGTGGCTT+AGG | 0.382436 | 8:+16500557 | MsaT042089.1:CDS |
AGTGGTTTGGGACCCAAGTA+TGG | 0.390417 | 8:+16502861 | MsaT042089.1:CDS |
GCTAAGGTGTTTGATGAGTC+TGG | 0.404181 | 8:+16500662 | MsaT042089.1:CDS |
GAAAGCGATACTAAGTGGTT+TGG | 0.405886 | 8:+16502848 | MsaT042089.1:CDS |
TTTGATGAGTCTGGTTTGAT+GGG | 0.408271 | 8:+16500671 | MsaT042089.1:CDS |
CTTGACGAGCTTCGTGAAGA+TGG | 0.408980 | 8:-16502659 | None:intergenic |
CACGGTGGGAATGTGGTAAC+TGG | 0.409472 | 8:+16500830 | MsaT042089.1:CDS |
TCCCTAAGATTGTAGATTGT+CGG | 0.412515 | 8:-16502596 | None:intergenic |
AACTGAGGATGCGTCTGATT+TGG | 0.415902 | 8:+16501072 | MsaT042089.1:CDS |
GAATGAGTTGTTGTCGGGTC+AGG | 0.421751 | 8:+16500709 | MsaT042089.1:CDS |
TCATGCGGCTGCGCAGTTCC+AGG | 0.424066 | 8:+16502950 | MsaT042089.1:CDS |
TTCTCAATTTCTTGTCGAAA+GGG | 0.425727 | 8:+16502901 | MsaT042089.1:CDS |
TTACCATTGGCGTTTCGATA+AGG | 0.427484 | 8:+16503045 | MsaT042089.1:CDS |
TGTTTGTGATGGTGAGTTGT+GGG | 0.431433 | 8:+16500529 | MsaT042089.1:CDS |
TCCTGTCTTCCCCTTCCTAT+AGG | 0.432461 | 8:-16502926 | None:intergenic |
TCCTATAGGAAGGGGAAGAC+AGG | 0.433625 | 8:+16502925 | MsaT042089.1:CDS |
AAAGCGATACTAAGTGGTTT+GGG | 0.433827 | 8:+16502849 | MsaT042089.1:CDS |
TTGGTGAAGAGCGGTGAGTC+TGG | 0.434679 | 8:+16501091 | MsaT042089.1:CDS |
TGATAATATTGTTCCGGTAG+TGG | 0.436711 | 8:+16501153 | MsaT042089.1:CDS |
ATACAGCCAATGGCCATACT+TGG | 0.437133 | 8:-16502874 | None:intergenic |
AAACATTTCCTAACAAGAGC+AGG | 0.439152 | 8:+16503182 | MsaT042089.1:CDS |
GTGGAGGGCTTACAGTAATC+AGG | 0.440528 | 8:+16501315 | MsaT042089.1:CDS |
GTGGATTTGTCTGGTGGTGA+TGG | 0.450675 | 8:+16501172 | MsaT042089.1:CDS |
TGAGTTGTGGGATTTGGTTG+GGG | 0.451450 | 8:+16500541 | MsaT042089.1:CDS |
CTCTGTTTGATATGATGAGT+TGG | 0.453588 | 8:+16501230 | MsaT042089.1:CDS |
TTTGATGGGGTTTAAGGCTG+AGG | 0.456932 | 8:+16500685 | MsaT042089.1:CDS |
GTGAAGATGTTCGGAATTCG+TGG | 0.464902 | 8:+16503071 | MsaT042089.1:CDS |
GGTGGCTGGAGAGAAGGTTA+AGG | 0.466762 | 8:+16500742 | MsaT042089.1:CDS |
TATCGGTGATAATATTGTTC+CGG | 0.468339 | 8:+16501147 | MsaT042089.1:CDS |
GGTAACTGGAGAGAAGGTTA+AGG | 0.476059 | 8:+16500844 | MsaT042089.1:CDS |
GAGAGGATATGAACATTTCT+GGG | 0.477135 | 8:+16503147 | MsaT042089.1:CDS |
ATTCTCAATTTCTTGTCGAA+AGG | 0.481791 | 8:+16502900 | MsaT042089.1:CDS |
GTGGCTGGAGAGAAGGTTAA+GGG | 0.482398 | 8:+16500743 | MsaT042089.1:CDS |
GGACAGATGAAGACGAGAAA+AGG | 0.486764 | 8:+16503092 | MsaT042089.1:CDS |
CTGACACATTCAACAGAACC+TGG | 0.487585 | 8:-16502968 | None:intergenic |
ATTGTTGTTGACGGGAAAGG+TGG | 0.490249 | 8:+16500497 | MsaT042089.1:CDS |
AACGCAAAGCATACCATAGC+AGG | 0.490321 | 8:+16503245 | MsaT042089.1:CDS |
TGTTCATATCCTCTCTTTGG+AGG | 0.491805 | 8:-16503139 | None:intergenic |
CTGTTTGTGATGGTGAGTTG+TGG | 0.494879 | 8:+16500528 | MsaT042089.1:CDS |
GCATCGGCTCGCATCTGCGT+GGG | 0.496198 | 8:+16502779 | MsaT042089.1:CDS |
TCTGTTTGATATGATGAGTT+GGG | 0.500139 | 8:+16501231 | MsaT042089.1:CDS |
GTTCCGGTAGTGGATTTGTC+TGG | 0.501050 | 8:+16501163 | MsaT042089.1:CDS |
GAGAATCATGATGGTGATAT+CGG | 0.501429 | 8:+16501130 | MsaT042089.1:CDS |
TTGTCTGGTGGTGATGGAAG+TGG | 0.503537 | 8:+16501178 | MsaT042089.1:CDS |
GAGTCGTGTGTGATGAAAGT+TGG | 0.506590 | 8:+16500635 | MsaT042089.1:CDS |
GGGTTTGATGCTGTTTGTGA+TGG | 0.509454 | 8:+16500518 | MsaT042089.1:CDS |
TGGGACCCAAGTATGGCCAT+TGG | 0.513214 | 8:+16502868 | MsaT042089.1:CDS |
AGCTGTTGATTGTTGTTGAC+GGG | 0.513550 | 8:+16500489 | MsaT042089.1:CDS |
ATAAGGTCGGTGAAGATGTT+CGG | 0.518788 | 8:+16503062 | MsaT042089.1:CDS |
GAATCGAGAAATCCTACATC+GGG | 0.518984 | 8:-16500932 | None:intergenic |
CAAGTCGTCGTGCTGTGAAA+CGG | 0.521739 | 8:+16502720 | MsaT042089.1:CDS |
GTAACTGGAGAGAAGGTTAA+GGG | 0.523633 | 8:+16500845 | MsaT042089.1:CDS |
GCTAAAGCTAAGCTGGAGTT+AGG | 0.528280 | 8:+16503013 | MsaT042089.1:CDS |
GAATGTGGTGGCTGGAGAGA+AGG | 0.530094 | 8:+16500736 | MsaT042089.1:CDS |
TCCGACAATCTACAATCTTA+GGG | 0.531884 | 8:+16502595 | MsaT042089.1:CDS |
TGAGGTGAATGAGTTGTTGT+CGG | 0.533812 | 8:+16500703 | MsaT042089.1:CDS |
AAGGTTAAGGGTGGAGCTGA+TGG | 0.534301 | 8:+16500755 | MsaT042089.1:CDS |
GAAGTGGTTCTAGTCTTAAG+AGG | 0.534929 | 8:+16501194 | MsaT042089.1:CDS |
CATTGAACAGCAAAATTGGC+AGG | 0.537300 | 8:+16501396 | MsaT042089.1:CDS |
AATGAGTTGTTGTCGGGTCA+GGG | 0.537370 | 8:+16500710 | MsaT042089.1:CDS |
GATTTGGTTGGGGAAGAATG+TGG | 0.539468 | 8:+16500551 | MsaT042089.1:CDS |
CTGAGTGAGGGTAATGGTGA+TGG | 0.540918 | 8:+16501001 | MsaT042089.1:CDS |
CTTACAGTAATCAGGAGGCT+TGG | 0.542653 | 8:+16501323 | MsaT042089.1:CDS |
TAATCAGGAGGCTTGGAAGC+GGG | 0.543149 | 8:+16501330 | MsaT042089.1:CDS |
TGAGGGTAATGGTGATGGAA+TGG | 0.545924 | 8:+16501006 | MsaT042089.1:CDS |
GTGCGAATTTCGAGTCTAGT+GGG | 0.546249 | 8:+16500795 | MsaT042089.1:CDS |
GTGAAAGAAGTTCCCGATGT+AGG | 0.550596 | 8:+16500920 | MsaT042089.1:CDS |
AGTTCATCTGTGCTAGGCGA+AGG | 0.552705 | 8:+16502680 | MsaT042089.1:CDS |
GTCGGGTCAGGGTGGGAATG+TGG | 0.553223 | 8:+16500721 | MsaT042089.1:CDS |
TTACTGTAAGCCCTCCACTT+TGG | 0.553928 | 8:-16501310 | None:intergenic |
CTTGTCGAAAGGGATCCTAT+AGG | 0.556633 | 8:+16502911 | MsaT042089.1:CDS |
ACGATCAAGTTATAGTAGAT+GGG | 0.556760 | 8:+16502757 | MsaT042089.1:CDS |
GCGGGTTCTGTTGTTTCGAG+AGG | 0.558329 | 8:+16501348 | MsaT042089.1:CDS |
TGAAGACGAGAAAAGGTTCA+GGG | 0.560005 | 8:+16503099 | MsaT042089.1:CDS |
TTGATTGTTGTTGACGGGAA+AGG | 0.563358 | 8:+16500494 | MsaT042089.1:CDS |
GATGGAGGGAAAATAACTGT+AGG | 0.564686 | 8:+16501046 | MsaT042089.1:CDS |
GGATTCGGAGCAGTCCACTC+TGG | 0.565588 | 8:-16502824 | None:intergenic |
ATGGTCAGTGATACCGATGT+TGG | 0.565824 | 8:+16500974 | MsaT042089.1:CDS |
AAGCTGTTGATTGTTGTTGA+CGG | 0.566769 | 8:+16500488 | MsaT042089.1:CDS |
GAGGTGAATGAGTTGTTGTC+GGG | 0.568676 | 8:+16500704 | MsaT042089.1:CDS |
TCGTCAAGTTCATCTGTGCT+AGG | 0.569671 | 8:+16502674 | MsaT042089.1:CDS |
CAATCTACAATCTTAGGGAG+AGG | 0.570505 | 8:+16502600 | MsaT042089.1:CDS |
GCCTGAAAAGCCAAAGTGGA+GGG | 0.574127 | 8:+16501300 | MsaT042089.1:CDS |
AGAAATTCACGGTGGGAATG+TGG | 0.576328 | 8:+16500823 | MsaT042089.1:CDS |
TACAGCCAATGGCCATACTT+GGG | 0.577673 | 8:-16502873 | None:intergenic |
GTGGGATCATCATACATGCT+AGG | 0.577985 | 8:-16502572 | None:intergenic |
TTGTTGTTGACGGGAAAGGT+GGG | 0.578023 | 8:+16500498 | MsaT042089.1:CDS |
CATCGGCTCGCATCTGCGTG+GGG | 0.579313 | 8:+16502780 | MsaT042089.1:CDS |
ACTGGAGAGAAGGTTAAGGG+TGG | 0.579796 | 8:+16500848 | MsaT042089.1:CDS |
ATCTACAATCTTAGGGAGAG+GGG | 0.580993 | 8:+16502602 | MsaT042089.1:CDS |
AATCTACAATCTTAGGGAGA+GGG | 0.581096 | 8:+16502601 | MsaT042089.1:CDS |
GGAAAGCTGAGTGAGGGTAA+TGG | 0.581453 | 8:+16500995 | MsaT042089.1:CDS |
AAGTTATAGTAGATGGGCAT+CGG | 0.582631 | 8:+16502763 | MsaT042089.1:CDS |
TACCATAGCAGGCATACACT+TGG | 0.584083 | 8:+16503256 | MsaT042089.1:CDS |
AACATTTCCTAACAAGAGCA+GGG | 0.584542 | 8:+16503183 | MsaT042089.1:CDS |
CGACCTTATCGAAACGCCAA+TGG | 0.585564 | 8:-16503048 | None:intergenic |
CTCACTCAGCTTTCCAACAT+CGG | 0.585605 | 8:-16500987 | None:intergenic |
ATGGAGGGAAAATAACTGTA+GGG | 0.586968 | 8:+16501047 | MsaT042089.1:CDS |
GTTCATATCCTCTCTTTGGA+GGG | 0.587128 | 8:-16503138 | None:intergenic |
TCGAAAGGGATCCTATAGGA+AGG | 0.587509 | 8:+16502915 | MsaT042089.1:CDS |
CGATGCCTGAAAAGCCAAAG+TGG | 0.588222 | 8:+16501296 | MsaT042089.1:CDS |
TTGATGAGTCTGGTTTGATG+GGG | 0.588528 | 8:+16500672 | MsaT042089.1:CDS |
GGGTCAGGGTGGGAATGTGG+TGG | 0.588589 | 8:+16500724 | MsaT042089.1:CDS |
GAATGTGGTAACTGGAGAGA+AGG | 0.588966 | 8:+16500838 | MsaT042089.1:CDS |
TTTCACAGCACGACGACTTG+TGG | 0.590229 | 8:-16502717 | None:intergenic |
GAAAGGGATCCTATAGGAAG+GGG | 0.590844 | 8:+16502917 | MsaT042089.1:CDS |
ATCCTGAAAGCGATACTAAG+TGG | 0.591141 | 8:+16502843 | MsaT042089.1:CDS |
CCACCAGACAAATCCACTAC+CGG | 0.592047 | 8:-16501166 | None:intergenic |
CGAAAGGGATCCTATAGGAA+GGG | 0.595912 | 8:+16502916 | MsaT042089.1:CDS |
AGTTGTTGTCGGGTCAGGGT+GGG | 0.598266 | 8:+16500714 | MsaT042089.1:CDS |
GGCATCGGCTCGCATCTGCG+TGG | 0.600636 | 8:+16502778 | MsaT042089.1:CDS |
GTAATCAGGAGGCTTGGAAG+CGG | 0.600886 | 8:+16501329 | MsaT042089.1:CDS |
GAGTCTGGATTGCTGAATGT+TGG | 0.602152 | 8:+16501106 | MsaT042089.1:CDS |
AGATTGTAGATTGTCGGAGT+GGG | 0.602178 | 8:-16502590 | None:intergenic |
CACCAAGTGTATGCCTGCTA+TGG | 0.604240 | 8:-16503258 | None:intergenic |
TAGTCTTAAGAGGAAGAGAG+AGG | 0.607309 | 8:+16501204 | MsaT042089.1:CDS |
CATTGGCGTTTCGATAAGGT+CGG | 0.607511 | 8:+16503049 | MsaT042089.1:CDS |
AGTGGGGAGAAAGAAATTCA+CGG | 0.609700 | 8:+16500812 | MsaT042089.1:CDS |
CGATGTTGGAAAGCTGAGTG+AGG | 0.609819 | 8:+16500988 | MsaT042089.1:CDS |
TAGGCGAAGGAGATTTGGAC+GGG | 0.612279 | 8:+16502693 | MsaT042089.1:CDS |
AGTGCGAATTTCGAGTCTAG+TGG | 0.613148 | 8:+16500794 | MsaT042089.1:CDS |
AGCTAAGCTGGAGTTAGGCG+TGG | 0.617435 | 8:+16503018 | MsaT042089.1:CDS |
ATTCCAGAATGATGAATCGA+GGG | 0.617833 | 8:+16500951 | MsaT042089.1:CDS |
GATGAAAGTTGGTGATGCTA+AGG | 0.617892 | 8:+16500646 | MsaT042089.1:CDS |
TGCCTGAAAAGCCAAAGTGG+AGG | 0.624771 | 8:+16501299 | MsaT042089.1:CDS |
CAGCTTTACCCTCCAAAGAG+AGG | 0.627360 | 8:+16503130 | MsaT042089.1:CDS |
CCGGTAGTGGATTTGTCTGG+TGG | 0.629270 | 8:+16501166 | MsaT042089.1:CDS |
GGAACAATTTCAGGATCACA+AGG | 0.631056 | 8:-16501274 | None:intergenic |
CAGAATGATGAATCGAGGGA+TGG | 0.631748 | 8:+16500955 | MsaT042089.1:CDS |
GGAATCGAGAAATCCTACAT+CGG | 0.631911 | 8:-16500933 | None:intergenic |
TCTACAATCTTAGGGAGAGG+GGG | 0.633262 | 8:+16502603 | MsaT042089.1:CDS |
ATCAAGCTGAAGTGCCAGAG+TGG | 0.634304 | 8:+16502810 | MsaT042089.1:CDS |
TCTTAAGAGGAAGAGAGAGG+AGG | 0.635943 | 8:+16501207 | MsaT042089.1:CDS |
CTAGGCGAAGGAGATTTGGA+CGG | 0.640028 | 8:+16502692 | MsaT042089.1:CDS |
AAGATTGTAGATTGTCGGAG+TGG | 0.640461 | 8:-16502591 | None:intergenic |
GATTCCAGAATGATGAATCG+AGG | 0.640790 | 8:+16500950 | MsaT042089.1:CDS |
GAGTTGTTGTCGGGTCAGGG+TGG | 0.642746 | 8:+16500713 | MsaT042089.1:CDS |
TGAGAATTCGATACAGCCAA+TGG | 0.643809 | 8:-16502884 | None:intergenic |
GGGAGAAAGAAATTCACGGT+GGG | 0.651200 | 8:+16500816 | MsaT042089.1:CDS |
GATGTTGGAAAGCTGAGTGA+GGG | 0.661886 | 8:+16500989 | MsaT042089.1:CDS |
TGCGAATTTCGAGTCTAGTG+GGG | 0.671840 | 8:+16500796 | MsaT042089.1:CDS |
TGTGGCTTAGGTGTTAACGT+TGG | 0.673988 | 8:+16500569 | MsaT042089.1:CDS |
AGGGGAAGACAGGATTCATG+CGG | 0.683109 | 8:+16502935 | MsaT042089.1:CDS |
AATGTTGGCGAGAATCATGA+TGG | 0.684957 | 8:+16501121 | MsaT042089.1:CDS |
TGGAGCTGATGGTGCTAACG+AGG | 0.694652 | 8:+16500766 | MsaT042089.1:CDS |
GCTGGAGAGAAGGTTAAGGG+TGG | 0.695646 | 8:+16500746 | MsaT042089.1:CDS |
TGGAGTTGATGGTGCTAACG+AGG | 0.697135 | 8:+16500868 | MsaT042089.1:CDS |
GCGTCTGATTTGGTGAAGAG+CGG | 0.702691 | 8:+16501082 | MsaT042089.1:CDS |
GAGGGCTTACAGTAATCAGG+AGG | 0.703144 | 8:+16501318 | MsaT042089.1:CDS |
AGGATCACAAGGGTTACTCG+CGG | 0.705433 | 8:-16501263 | None:intergenic |
GAACAATTTCAGGATCACAA+GGG | 0.713883 | 8:-16501273 | None:intergenic |
AATAACTGTAGGGACAACTG+AGG | 0.724458 | 8:+16501057 | MsaT042089.1:CDS |
GGGGAGAAAGAAATTCACGG+TGG | 0.772176 | 8:+16500815 | MsaT042089.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 16500455 | 16503345 | 16500455 | ID=MsaG042089 |
Chr8 | mRNA | 16500455 | 16503345 | 16500455 | ID=MsaT042089.1;Parent=MsaG042089 |
Chr8 | exon | 16500455 | 16501417 | 16500455 | ID=MsaT042089.1.exon1;Parent=MsaT042089.1 |
Chr8 | CDS | 16500455 | 16501417 | 16500455 | ID=cds.MsaT042089.1;Parent=MsaT042089.1 |
Chr8 | exon | 16502557 | 16503345 | 16502557 | ID=MsaT042089.1.exon2;Parent=MsaT042089.1 |
Chr8 | CDS | 16502557 | 16503345 | 16502557 | ID=cds.MsaT042089.1;Parent=MsaT042089.1 |
Gene Sequence |
Protein sequence |