AlfalfaGEDB | MsaG042127

M. sativa ssp. caerulea / MsaG042127

KEGG: K14500
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042127	XP_013444845.1	99.796	491	1	0	1	491	1	491	0.0	1026

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042127	sp\|Q8W4L3\|BSK3_ARATH	80.244	491	95	2	1	491	1	489	0.0	834

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042127	tr\|A0A072TZD1\|A0A072TZD1_MEDTR	99.796	491	1	0	1	491	1	491	0.0	1026

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042127	MtrunA17_Chr8g0349041	99.796	491	1	0	1	491	1	491	0.0	1026
MsaG042127	MtrunA17_Chr7g0247441	84.959	492	73	1	1	491	1	492	0.0	883
MsaG042127	MtrunA17_Chr8g0386761	75.670	485	116	2	1	483	1	485	0.0	771
MsaG042127	MtrunA17_Chr4g0032361	68.496	492	148	3	1	485	1	492	0.0	715
MsaG042127	MtrunA17_Chr5g0448561	64.468	470	157	4	23	483	48	516	0.0	621
MsaG042127	MtrunA17_Chr4g0054861	61.726	452	169	1	36	483	40	491	0.0	599
MsaG042127	MtrunA17_Chr4g0008911	74.064	374	93	1	1	370	1	374	0.0	580
MsaG042127	MtrunA17_Chr2g0328731	55.705	298	72	6	78	371	2	243	5.87e-103	308
MsaG042127	MtrunA17_Chr2g0328171	35.119	336	179	11	11	314	32	360	3.02e-48	171
MsaG042127	MtrunA17_Chr8g0388941	31.722	331	197	7	14	318	29	356	1.85e-46	166

Showing 1 to 10 of 505 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG042127	AT4G00710.1	80.244	491	95	2	1	491	1	489	834
MsaG042127	AT4G00710.2	80.244	491	95	2	1	491	1	489	834
MsaG042127	AT1G63500.1	77.938	485	107	0	1	485	1	485	796
MsaG042127	AT5G41260.1	75.464	485	119	0	1	485	1	485	781
MsaG042127	AT5G59010.1	71.253	487	132	2	1	483	1	483	732
MsaG042127	AT3G54030.1	71.575	489	129	3	1	483	1	485	723
MsaG042127	AT1G01740.2	70.468	491	135	5	1	490	1	482	699
MsaG042127	AT1G01740.1	70.468	491	135	5	1	490	1	482	699
MsaG042127	AT1G01740.5	69.043	491	134	4	1	490	1	474	682
MsaG042127	AT4G35230.1	65.778	450	148	2	39	483	56	504	622

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 103 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGCCACCAATGATTT+AGG	0.235401	8:+16940008	None:intergenic
AAATGAGAATTGCTGTTAAA+CGG	0.378605	8:-16942640	MsaT042127.1:CDS
AACGGTTTAATAGAAATGCT+TGG	0.479346	8:-16942622	MsaT042127.1:CDS
AAGAATGACTTACATGACTC+GGG	0.526282	8:+16940300	None:intergenic
AAGCTATATATTACACTTTC+TGG	0.150839	8:+16940365	None:intergenic
AAGGCCTAATCCTAAATCAT+TGG	0.486437	8:-16940018	MsaT042127.1:CDS
AATCCTAGGCTTTCTACTTT+TGG	0.204064	8:-16940969	MsaT042127.1:CDS
AATGACTTACATGACTCGGG+GGG	0.726049	8:+16940303	None:intergenic
ACATCTGAAGATTTCTGTCC+CGG	0.494019	8:+16940135	None:intergenic
ACCTCGGTTTCTTTCTGAAG+AGG	0.521522	8:+16939981	None:intergenic

Showing 1 to 10 of 103 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	16938384	16942996	16938384	ID=MsaG042127
Chr8	mRNA	16938384	16942996	16938384	ID=MsaT042127.1;Parent=MsaG042127
Chr8	exon	16938384	16938638	16938384	ID=MsaT042127.1.exon10;Parent=MsaT042127.1
Chr8	CDS	16938384	16938638	16938384	ID=cds.MsaT042127.1;Parent=MsaT042127.1
Chr8	exon	16938918	16939031	16938918	ID=MsaT042127.1.exon9;Parent=MsaT042127.1
Chr8	CDS	16938918	16939031	16938918	ID=cds.MsaT042127.1;Parent=MsaT042127.1
Chr8	exon	16939132	16939284	16939132	ID=MsaT042127.1.exon8;Parent=MsaT042127.1
Chr8	CDS	16939132	16939284	16939132	ID=cds.MsaT042127.1;Parent=MsaT042127.1
Chr8	exon	16939983	16940171	16939983	ID=MsaT042127.1.exon7;Parent=MsaT042127.1
Chr8	CDS	16939983	16940171	16939983	ID=cds.MsaT042127.1;Parent=MsaT042127.1
Chr8	exon	16940313	16940398	16940313	ID=MsaT042127.1.exon6;Parent=MsaT042127.1
Chr8	CDS	16940313	16940398	16940313	ID=cds.MsaT042127.1;Parent=MsaT042127.1
Chr8	exon	16940892	16940997	16940892	ID=MsaT042127.1.exon5;Parent=MsaT042127.1
Chr8	CDS	16940892	16940997	16940892	ID=cds.MsaT042127.1;Parent=MsaT042127.1
Chr8	exon	16941071	16941204	16941071	ID=MsaT042127.1.exon4;Parent=MsaT042127.1
Chr8	CDS	16941071	16941204	16941071	ID=cds.MsaT042127.1;Parent=MsaT042127.1
Chr8	exon	16941744	16941879	16941744	ID=MsaT042127.1.exon3;Parent=MsaT042127.1
Chr8	CDS	16941744	16941879	16941744	ID=cds.MsaT042127.1;Parent=MsaT042127.1
Chr8	exon	16942601	16942821	16942601	ID=MsaT042127.1.exon2;Parent=MsaT042127.1
Chr8	CDS	16942601	16942821	16942601	ID=cds.MsaT042127.1;Parent=MsaT042127.1
Chr8	exon	16942915	16942996	16942915	ID=MsaT042127.1.exon1;Parent=MsaT042127.1
Chr8	CDS	16942915	16942996	16942915	ID=cds.MsaT042127.1;Parent=MsaT042127.1

Gene Sequence

>MsaT042127.1

ATGGGGATTCAGTGCTCGAGACTCGTTCCATGTTGTGTGAATTCGCAAGTTAAGGCGTCGGTTCTTGAAACTCCAGATGCTGAAAATGATGATAGAAGTGAGGTTAGTAACTGGCCTACGTTCCGTGAGTTTACACTCGAGCAACTTAAGAATGCAACATCTGGTTTTGCTGTCGAGAATATTGTATCTGAGCATGGAGAGAAAGCTCCAAATGTTGTTTATAAAGGGAAGCTGGAAAATCAAATGAGAATTGCTGTTAAACGGTTTAATAGAAATGCTTGGCCTGATACTCGGCAGTTTTTGGAGGAAGCAAAAGCAGTTGGCCAGCTTCGTAACCAAAGGTTGGCAAACTTGCTTGGTTGTTGTTGTGAAGGAGATGAGAGGTTGCTTGTGGCAGAATATATGCCAAATGAAACACTTGCAAAACACCTTTTCCATTGGGAATCACAACCTATGAAATGGGCGATGCGACTAAGGGTTGTTCTGCATCTTGCACAAGCTCTAGAGTACTGCACAGGCAAAGGGCGTGCTCTATATCACGATCTCAATGCATATAGAGTTCTCTTTGATGAGGATGGTAATCCTAGGCTTTCTACTTTTGGACTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAATATCTCCGAACTGGGAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGCACTCTTTTACTTGACCTTCTCAGTGGAAAGCATATCCCCCCGAGTCATGCCCTCGATTTGATCCGGGACAGAAATCTTCAGATGTTGACAGATTCTTGTTTGGAAGGACAATTTTCTGACAATGACGGAACTGAGCTGGTACGCTTGGCATCTCGATGTTTACAGTATGAACCTAGAGAAAGGCCTAATCCTAAATCATTGGTGGCTGCTTTGGCTCCTCTTCAGAAAGAAACCGAGGTTCCTTCACACGTATTGATGGGTATACCCCATAGCACCAGTTTTGCATCATTATCTCCACTCGGTGAAGCATGTTCAAGAAAGGACTTGACTGCTATACGTGAAGTTCTGGATAGTATTGGTTATAAAGATGATGAAGGAGTTACAAATGAGTTATCATTCCATATGTGGACTGATCAAATGCAGGACATATTAAATTGCAAGAAAAAGGGGGATGCTGCTTTCCGACAGAAAGAGTTTAGAGAAGCAATCGAGTGCTATACACAGTTCATCGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGACGCAGTTTGTGTTATCTCATAAGCGACATGGCTAACGAAGGGCTAAATGACGCAATGCAAGCGCAAGTTATTTCACCAATATGGCACATTGCATCATATCTTCAATCTGTTGCACTTGCAACACTTGGTATGGAGAATGAAGCACAAGCAGCACTTAAAGAAAGCACAACACTCGAATCGAAGTGGAACGCGACTTCGAAACAAAAGTGA

Protein sequence

>MsaT042127.1

MGIQCSRLVPCCVNSQVKASVLETPDAENDDRSEVSNWPTFREFTLEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDTRQFLEEAKAVGQLRNQRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHWESQPMKWAMRLRVVLHLAQALEYCTGKGRALYHDLNAYRVLFDEDGNPRLSTFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDNDGTELVRLASRCLQYEPRERPNPKSLVAALAPLQKETEVPSHVLMGIPHSTSFASLSPLGEACSRKDLTAIREVLDSIGYKDDEGVTNELSFHMWTDQMQDILNCKKKGDAAFRQKEFREAIECYTQFIDAGTMVSPTVYARRSLCYLISDMANEGLNDAMQAQVISPIWHIASYLQSVALATLGMENEAQAALKESTTLESKWNATSKQK*