AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG042325

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042325 MtrunA17_Chr8g0351031 95.089 224 11 0 1 224 1 224 1.43e-154 427
MsaG042325 MtrunA17_Chr8g0351041 91.925 161 13 0 1 161 1 161 7.00e-105 299
MsaG042325 MtrunA17_Chr7g0246431 68.396 212 61 4 1 211 1 207 7.19e-96 278
MsaG042325 MtrunA17_Chr4g0057151 57.078 219 75 4 1 216 1 203 9.06e-76 227
MsaG042325 MtrunA17_Chr3g0097101 44.340 212 110 3 1 210 16 221 1.10e-52 170
MsaG042325 MtrunA17_Chr2g0284911 50.888 169 82 1 3 171 18 185 1.67e-51 167
MsaG042325 MtrunA17_Chr3g0077501 48.538 171 87 1 1 171 1 170 8.71e-49 159
MsaG042325 MtrunA17_Chr8g0351051 50.000 168 83 1 1 168 1 167 4.08e-48 158
MsaG042325 MtrunA17_Chr8g0380021 47.929 169 87 1 3 171 19 186 3.98e-47 155
MsaG042325 MtrunA17_Chr8g0366231 49.704 169 83 2 1 168 1 168 9.89e-46 152
MsaG042325 MtrunA17_Chr5g0420091 47.727 176 82 4 1 171 1 171 7.68e-45 149
MsaG042325 MtrunA17_Chr2g0279821 46.591 176 82 3 1 171 1 169 2.70e-44 148
MsaG042325 MtrunA17_Chr6g0455511 40.183 219 118 5 1 212 1 213 2.11e-43 146
MsaG042325 MtrunA17_Chr4g0061671 45.665 173 88 3 1 171 1 169 2.30e-43 144
MsaG042325 MtrunA17_Chr7g0220111 41.096 219 115 5 1 212 1 212 2.54e-43 146
MsaG042325 MtrunA17_Chr4g0061691 46.471 170 89 2 1 169 1 169 3.48e-43 145
MsaG042325 MtrunA17_Chr3g0122251 44.944 178 95 2 1 175 1 178 2.98e-42 143
MsaG042325 MtrunA17_Chr5g0420081 41.364 220 105 5 1 213 1 203 3.79e-42 142
MsaG042325 MtrunA17_Chr4g0018421 43.860 171 95 1 1 170 1 171 2.79e-41 139
MsaG042325 MtrunA17_Chr7g0220121 43.860 171 88 3 1 168 1 166 4.32e-40 138
MsaG042325 MtrunA17_Chr4g0049541 43.678 174 90 2 1 171 1 169 1.64e-39 135
MsaG042325 MtrunA17_Chr5g0411691 39.024 205 121 2 1 205 1 201 1.76e-39 135
MsaG042325 MtrunA17_Chr1g0204111 37.900 219 134 2 1 219 17 233 6.93e-38 132
MsaG042325 MtrunA17_Chr6g0474371 43.275 171 85 5 1 161 1 169 2.69e-35 124
MsaG042325 MtrunA17_Chr4g0020221 47.399 173 82 3 1 168 1 169 1.93e-34 123
MsaG042325 MtrunA17_Chr4g0049901 43.529 170 93 2 1 168 27 195 4.04e-34 122
MsaG042325 MtrunA17_Chr1g0164791 39.444 180 91 4 1 169 1 173 2.73e-33 119
MsaG042325 MtrunA17_Chr5g0412271 37.557 221 121 7 1 214 1 211 1.13e-32 118
MsaG042325 MtrunA17_Chr5g0412461 35.808 229 126 6 1 213 1 224 1.29e-32 117
MsaG042325 MtrunA17_Chr3g0142191 41.935 155 80 3 1 152 1 148 5.31e-32 116
MsaG042325 MtrunA17_Chr3g0125241 37.097 186 102 6 1 178 26 204 6.34e-31 112
MsaG042325 MtrunA17_Chr7g0246381 75.410 61 15 0 1 61 1 61 1.79e-27 100
MsaG042325 MtrunA17_Chr5g0427401 36.667 180 103 3 1 176 1 173 2.13e-27 104
MsaG042325 MtrunA17_Chr8g0377561 75.862 58 14 0 1 58 1 58 1.34e-26 98.6
MsaG042325 MtrunA17_Chr1g0159661 36.424 151 86 4 1 148 1 144 1.66e-26 100
MsaG042325 MtrunA17_Chr5g0404951 36.571 175 97 5 1 168 1 168 1.38e-25 99.8
MsaG042325 MtrunA17_Chr3g0134451 36.402 239 104 9 1 205 1 225 1.60e-25 101
MsaG042325 MtrunA17_Chr5g0427921 68.333 60 19 0 1 60 1 60 5.67e-25 93.2
MsaG042325 MtrunA17_Chr2g0308251 65.217 69 24 0 1 69 1 69 6.65e-25 93.6
MsaG042325 MtrunA17_Chr1g0173161 69.355 62 19 0 1 62 1 62 1.29e-24 92.8
MsaG042325 MtrunA17_Chr5g0425191 66.102 59 20 0 1 59 1 59 4.13e-21 84.3
MsaG042325 MtrunA17_Chr4g0044071 62.712 59 22 0 1 59 1 59 9.20e-21 84.0
MsaG042325 MtrunA17_Chr8g0379021 34.375 160 88 4 3 157 13 160 1.51e-18 79.7
MsaG042325 MtrunA17_Chr1g0175601 40.385 104 60 1 1 102 1 104 2.30e-18 79.3
MsaG042325 MtrunA17_Chr4g0018951 39.167 120 67 2 14 128 24 142 2.53e-18 79.0
MsaG042325 MtrunA17_Chr2g0292791 53.731 67 31 0 3 69 10 76 2.53e-18 80.5
MsaG042325 MtrunA17_Chr1g0208581 29.596 223 127 9 3 211 10 216 3.42e-18 80.1
MsaG042325 MtrunA17_Chr1g0180591 40.816 98 53 1 1 98 1 93 3.87e-18 79.0
MsaG042325 MtrunA17_Chr1g0208561 50.746 67 33 0 3 69 10 76 6.08e-18 79.3
MsaG042325 MtrunA17_Chr3g0089141 50.746 67 33 0 3 69 10 76 6.15e-18 79.3
MsaG042325 MtrunA17_Chr1g0166611 72.917 48 13 0 13 60 17 64 1.08e-17 76.6
MsaG042325 MtrunA17_Chr8g0376821 44.828 87 43 1 1 87 1 82 3.42e-17 76.3
MsaG042325 MtrunA17_Chr2g0333981 39.286 112 65 1 1 112 11 119 3.49e-17 76.3
MsaG042325 MtrunA17_Chr1g0175611 41.667 96 54 1 1 94 1 96 4.02e-17 75.9
MsaG042325 MtrunA17_Chr3g0099411 50.746 67 33 0 3 69 10 76 5.02e-17 76.6
MsaG042325 MtrunA17_Chr8g0355091 52.239 67 32 0 3 69 10 76 7.02e-17 76.6
MsaG042325 MtrunA17_Chr1g0206721 50.746 67 33 0 3 69 10 76 8.02e-17 76.6
MsaG042325 MtrunA17_Chr1g0206701 50.746 67 33 0 3 69 10 76 1.15e-16 76.3
MsaG042325 MtrunA17_Chr3g0099421 52.239 67 32 0 3 69 35 101 1.41e-16 76.3
MsaG042325 MtrunA17_Chr1g0188671 28.910 211 112 7 3 211 48 222 1.50e-16 76.3
MsaG042325 MtrunA17_Chr1g0187361 50.746 67 33 0 3 69 10 76 1.53e-16 75.9
MsaG042325 MtrunA17_Chr2g0325971 49.254 67 34 0 3 69 10 76 2.32e-16 75.1
MsaG042325 MtrunA17_Chr5g0419601 43.373 83 42 1 3 85 10 87 2.49e-16 75.1
MsaG042325 MtrunA17_Chr1g0169761 49.275 69 35 0 1 69 1 69 2.51e-16 73.9
MsaG042325 MtrunA17_Chr8g0357771 34.615 104 66 1 1 102 1 104 2.93e-16 73.9
MsaG042325 MtrunA17_Chr5g0422421 50.746 67 33 0 3 69 10 76 3.74e-16 74.7
MsaG042325 MtrunA17_Chr1g0149391 49.254 67 34 0 3 69 10 76 4.73e-16 74.3
MsaG042325 MtrunA17_Chr1g0206991 47.761 67 35 0 3 69 10 76 5.61e-16 73.2
MsaG042325 MtrunA17_Chr2g0317481 49.254 67 34 0 3 69 10 76 6.16e-16 73.9
MsaG042325 MtrunA17_Chr2g0317451 49.254 67 34 0 3 69 10 76 6.35e-16 73.9
MsaG042325 MtrunA17_Chr4g0074101 42.529 87 45 1 1 87 1 82 1.03e-15 72.8
MsaG042325 MtrunA17_Chr4g0052061 29.452 146 92 3 1 141 1 140 4.89e-15 70.1
MsaG042325 MtrunA17_Chr4g0052081 44.928 69 38 0 1 69 1 69 6.05e-15 70.1
MsaG042325 MtrunA17_Chr5g0422941 47.761 67 35 0 3 69 10 76 7.53e-15 71.2
MsaG042325 MtrunA17_Chr2g0300421 46.269 67 36 0 3 69 10 76 1.38e-14 69.3
MsaG042325 MtrunA17_Chr3g0089151 45.714 70 36 1 2 69 7 76 1.81e-14 67.8
MsaG042325 MtrunA17_Chr8g0356071 36.082 97 60 2 1 95 1 97 1.96e-14 68.6
MsaG042325 MtrunA17_Chr5g0417661 52.830 53 25 0 1 53 56 108 2.08e-14 67.4
MsaG042325 MtrunA17_Chr2g0300441 46.154 65 35 0 5 69 12 76 6.55e-14 68.6
MsaG042325 MtrunA17_Chr1g0187351 44.928 69 38 0 11 79 1 69 1.41e-13 63.9
MsaG042325 MtrunA17_Chr3g0119901 44.776 67 37 0 3 69 10 76 1.55e-13 67.0
MsaG042325 MtrunA17_Chr3g0111841 48.333 60 31 0 7 66 1 60 2.39e-13 63.2
MsaG042325 MtrunA17_Chr1g0206691 49.153 59 30 0 11 69 1 59 3.19e-13 66.2
MsaG042325 MtrunA17_Chr4g0060841 43.662 71 38 1 1 69 1 71 5.34e-13 67.0
MsaG042325 MtrunA17_Chr4g0071601 36.735 98 59 1 15 112 25 119 6.07e-13 65.1
MsaG042325 MtrunA17_Chr3g0085241 43.284 67 38 0 3 69 42 108 7.93e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042325 AT2G45660.1 64.186 215 69 3 1 213 1 209 7.13e-91 266
MsaG042325 AT2G45660.2 73.913 161 37 2 1 159 1 158 1.88e-80 238
MsaG042325 AT4G22950.3 57.080 226 83 3 1 222 1 216 4.28e-78 234
MsaG042325 AT4G22950.1 57.080 226 83 3 1 222 1 216 4.28e-78 234
MsaG042325 AT5G62165.3 54.930 213 89 3 1 213 1 206 1.09e-74 225
MsaG042325 AT5G62165.1 54.930 213 89 3 1 213 1 206 1.09e-74 225
MsaG042325 AT5G62165.2 54.930 213 89 3 1 213 1 206 1.09e-74 225
MsaG042325 AT4G22950.2 65.497 171 57 1 1 171 1 169 9.20e-74 221
MsaG042325 AT4G11880.4 57.399 223 89 3 1 222 1 218 5.74e-72 218
MsaG042325 AT4G11880.1 57.399 223 89 3 1 222 1 218 5.74e-72 218
MsaG042325 AT5G62165.17 62.420 157 58 1 1 157 1 156 7.40e-69 208
MsaG042325 AT5G62165.12 62.420 157 58 1 1 157 1 156 7.40e-69 208
MsaG042325 AT5G62165.11 62.420 157 58 1 1 157 1 156 7.40e-69 208
MsaG042325 AT4G11880.2 65.823 158 51 2 1 157 1 156 9.20e-67 204
MsaG042325 AT4G11880.3 65.823 158 51 2 1 157 1 156 9.20e-67 204
MsaG042325 AT5G62165.10 51.643 213 82 4 1 213 1 192 1.87e-65 201
MsaG042325 AT5G62165.4 51.643 213 82 4 1 213 1 192 1.87e-65 201
MsaG042325 AT5G62165.6 60.265 151 59 1 1 151 1 150 2.01e-64 197
MsaG042325 AT5G62165.9 60.265 151 59 1 1 151 1 150 2.01e-64 197
MsaG042325 AT5G62165.7 60.265 151 59 1 1 151 1 150 2.01e-64 197
MsaG042325 AT5G62165.8 60.265 151 59 1 1 151 1 150 2.01e-64 197
MsaG042325 AT5G62165.13 60.265 151 59 1 1 151 1 150 2.01e-64 197
MsaG042325 AT5G51870.1 47.465 217 102 2 1 216 1 206 6.83e-61 190
MsaG042325 AT5G51870.4 45.982 224 107 2 1 216 1 218 3.37e-58 183
MsaG042325 AT5G51870.3 45.982 224 107 2 1 216 11 228 3.68e-58 184
MsaG042325 AT5G51860.1 43.981 216 115 1 1 216 1 210 3.33e-54 173
MsaG042325 AT5G51860.2 44.037 218 103 2 1 216 1 201 1.24e-53 171
MsaG042325 AT3G58780.1 49.123 171 86 1 1 171 16 185 1.20e-50 165
MsaG042325 AT3G58780.5 49.123 171 86 1 1 171 22 191 1.38e-50 165
MsaG042325 AT5G51870.2 55.172 145 65 0 1 145 1 145 2.76e-50 162
MsaG042325 AT4G09960.1 50.292 171 84 1 1 171 1 170 2.86e-50 164
MsaG042325 AT4G09960.6 50.292 171 84 1 1 171 2 171 3.01e-50 163
MsaG042325 AT4G09960.5 50.292 171 84 1 1 171 11 180 5.35e-50 163
MsaG042325 AT4G18960.1 50.888 169 82 1 3 171 19 186 5.56e-50 163
MsaG042325 AT4G09960.3 50.292 171 84 1 1 171 27 196 1.08e-49 163
MsaG042325 AT5G51870.5 55.172 145 65 0 1 145 24 168 1.24e-49 160
MsaG042325 AT2G42830.1 49.112 169 85 1 3 171 18 185 1.34e-49 162
MsaG042325 AT2G45650.1 51.163 172 82 1 1 172 1 170 7.85e-49 160
MsaG042325 AT2G42830.2 49.080 163 82 1 3 165 18 179 2.62e-48 159
MsaG042325 AT4G09960.2 54.545 143 64 1 1 143 1 142 8.65e-48 157
MsaG042325 AT4G09960.4 47.340 188 88 3 1 178 96 282 1.91e-47 159
MsaG042325 AT3G58780.4 53.846 143 65 1 3 145 18 159 7.28e-47 156
MsaG042325 AT3G61120.1 50.932 161 76 1 1 161 1 158 2.21e-46 154
MsaG042325 AT2G03710.3 44.509 173 92 2 1 171 1 171 3.26e-46 152
MsaG042325 AT2G03710.2 44.509 173 92 2 1 171 1 171 1.52e-45 152
MsaG042325 AT3G58780.2 46.784 171 83 2 1 171 16 178 1.76e-45 152
MsaG042325 AT2G03710.1 44.509 173 92 2 1 171 1 171 1.76e-45 152
MsaG042325 AT3G02310.1 41.892 222 106 6 1 207 1 214 5.29e-45 150
MsaG042325 AT3G58780.3 42.857 196 86 2 1 171 16 210 5.96e-45 151
MsaG042325 AT1G69120.2 48.256 172 87 2 1 171 1 171 1.46e-44 149
MsaG042325 AT1G24260.1 48.824 170 85 2 1 168 1 170 1.81e-44 149
MsaG042325 AT1G24260.2 49.711 173 80 4 1 168 1 171 2.79e-44 149
MsaG042325 AT1G69120.1 48.256 172 87 2 1 171 1 171 4.23e-44 149
MsaG042325 AT5G15800.1 47.191 178 80 4 1 171 1 171 8.85e-44 147
MsaG042325 AT3G02310.2 47.191 178 80 4 1 171 1 171 1.02e-43 145
MsaG042325 AT5G15800.2 47.191 178 80 4 1 171 1 171 1.42e-43 147
MsaG042325 AT1G26310.1 47.399 173 89 2 1 171 1 173 3.43e-43 146
MsaG042325 AT3G57230.1 42.708 192 106 3 1 192 1 188 6.04e-43 145
MsaG042325 AT3G57230.4 42.708 192 106 3 1 192 1 188 6.04e-43 145
MsaG042325 AT1G24260.3 50.617 162 73 4 1 157 1 160 2.39e-42 143
MsaG042325 AT5G60910.1 45.930 172 91 2 1 171 1 171 2.53e-42 144
MsaG042325 AT4G37940.1 43.353 173 92 3 1 171 1 169 5.39e-40 137
MsaG042325 AT3G57230.2 47.917 144 73 1 1 144 1 142 6.47e-40 134
MsaG042325 AT5G13790.2 44.643 168 88 1 1 168 1 163 9.90e-39 135
MsaG042325 AT3G30260.1 44.681 188 97 4 1 183 1 186 1.42e-38 134
MsaG042325 AT2G22630.1 44.509 173 90 3 1 171 1 169 4.22e-38 132
MsaG042325 AT2G22630.2 44.509 173 90 3 1 171 1 169 4.22e-38 132
MsaG042325 AT5G62165.14 67.442 86 28 0 1 86 1 86 6.59e-38 128
MsaG042325 AT5G13790.1 44.048 168 86 1 1 168 1 160 2.53e-37 131
MsaG042325 AT4G37940.4 42.197 173 94 3 1 171 1 169 7.03e-37 129
MsaG042325 AT4G37940.3 45.638 149 75 3 1 147 1 145 1.64e-36 126
MsaG042325 AT4G24540.1 36.161 224 125 4 1 213 1 217 3.26e-36 127
MsaG042325 AT5G23260.2 43.713 167 88 4 1 165 1 163 3.18e-35 125
MsaG042325 AT5G23260.4 43.713 167 88 4 1 165 17 179 4.28e-35 125
MsaG042325 AT2G22540.3 41.860 172 91 2 1 168 1 167 7.31e-34 122
MsaG042325 AT2G22540.1 41.860 172 91 2 1 168 1 167 7.31e-34 122
MsaG042325 AT3G57390.3 39.779 181 89 3 1 168 1 174 9.38e-33 118
MsaG042325 AT5G10140.4 42.500 160 78 3 1 157 1 149 1.45e-32 117
MsaG042325 AT3G57390.1 33.735 249 133 4 1 224 1 242 1.66e-32 119
MsaG042325 AT2G14210.1 44.379 169 91 3 1 168 1 167 1.82e-32 118
MsaG042325 AT5G65060.1 39.655 174 95 3 1 173 1 165 2.15e-32 117
MsaG042325 AT2G14210.2 44.379 169 91 3 1 168 1 167 2.19e-32 117
MsaG042325 AT5G23260.1 43.713 167 83 5 1 165 17 174 2.88e-32 118
MsaG042325 AT5G23260.3 40.884 181 97 5 1 175 1 177 4.37e-32 117
MsaG042325 AT5G65060.3 40.000 170 92 3 1 169 1 161 1.20e-31 114
MsaG042325 AT5G10140.2 42.484 153 78 2 1 152 1 144 3.33e-31 112
MsaG042325 AT5G10140.1 41.935 155 76 3 1 152 1 144 5.96e-31 113
MsaG042325 AT5G10140.3 42.484 153 78 2 1 152 1 144 7.74e-31 112
MsaG042325 AT1G71692.1 41.341 179 96 3 1 171 1 178 9.82e-31 112
MsaG042325 AT5G65070.1 40.314 191 97 4 1 185 1 180 1.00e-30 112
MsaG042325 AT5G65070.2 37.915 211 105 4 1 185 1 211 1.76e-30 112
MsaG042325 AT3G54340.1 39.877 163 88 3 1 160 1 156 1.55e-29 110
MsaG042325 AT5G65060.2 38.506 174 86 4 1 173 1 154 1.74e-29 108
MsaG042325 AT5G65050.3 38.506 174 97 3 1 173 1 165 2.82e-29 108
MsaG042325 AT5G65050.2 39.053 169 93 3 1 168 1 160 7.50e-29 107
MsaG042325 AT2G22540.2 38.953 172 91 3 1 168 1 162 3.48e-28 107
MsaG042325 AT5G65070.3 36.792 212 107 4 1 185 1 212 3.77e-28 106
MsaG042325 AT1G77080.4 40.223 179 87 3 1 173 1 165 2.38e-27 103
MsaG042325 AT5G65050.1 39.355 155 84 3 1 154 1 146 5.89e-27 102
MsaG042325 AT5G65070.5 37.778 180 89 3 1 157 1 180 1.23e-26 102
MsaG042325 AT1G77080.11 40.571 175 84 3 1 169 1 161 1.25e-26 101
MsaG042325 AT1G77080.5 40.571 175 84 3 1 169 1 161 1.37e-26 101
MsaG042325 AT5G65050.5 37.356 174 88 4 1 173 1 154 1.96e-26 101
MsaG042325 AT5G20240.2 37.162 148 85 3 1 146 1 142 3.88e-26 99.4
MsaG042325 AT5G20240.1 36.913 149 86 3 1 147 1 143 6.02e-26 100
MsaG042325 AT1G77080.2 41.040 173 90 2 1 173 1 161 6.35e-26 100
MsaG042325 AT5G65080.2 38.919 185 104 3 1 185 8 183 7.69e-26 100
MsaG042325 AT1G31140.2 38.000 150 91 1 1 148 1 150 1.32e-25 99.8
MsaG042325 AT5G65070.4 40.667 150 75 3 1 147 1 139 1.97e-25 97.4
MsaG042325 AT5G65080.3 37.975 158 88 3 1 157 8 156 2.44e-25 98.6
MsaG042325 AT1G31140.1 38.000 150 89 2 1 148 1 148 6.57e-25 97.8
MsaG042325 AT1G77080.8 39.062 192 98 4 1 173 1 192 1.09e-23 94.7
MsaG042325 AT1G77080.12 40.881 159 82 2 1 159 1 147 2.34e-22 89.4
MsaG042325 AT1G77980.1 58.333 72 29 1 1 71 1 72 6.22e-21 89.7
MsaG042325 AT1G22130.1 58.333 72 29 1 1 71 1 72 1.29e-20 89.0
MsaG042325 AT5G62165.15 44.231 104 52 2 110 213 56 153 5.20e-19 80.9
MsaG042325 AT5G62165.5 44.231 104 52 2 110 213 56 153 5.20e-19 80.9
MsaG042325 AT5G60440.1 32.738 168 81 5 3 154 8 159 7.12e-19 83.6
MsaG042325 AT1G77950.3 26.230 244 134 6 1 204 1 238 8.81e-19 82.4
MsaG042325 AT1G77950.2 26.230 244 134 6 1 204 1 238 8.81e-19 82.4
MsaG042325 AT1G77950.1 26.230 244 134 6 1 204 1 238 8.81e-19 82.4
MsaG042325 AT1G77950.4 26.230 244 134 6 1 204 1 238 8.81e-19 82.4
MsaG042325 AT4G37435.1 54.545 66 30 0 1 66 1 66 1.31e-17 77.8
MsaG042325 AT4G36590.1 53.623 69 32 0 3 71 8 76 2.00e-17 78.6
MsaG042325 AT3G66656.1 46.479 71 38 0 1 71 1 71 1.43e-16 75.1
MsaG042325 AT2G34440.1 44.928 69 38 0 1 69 1 69 4.68e-16 73.6
MsaG042325 AT1G18750.4 49.296 71 34 1 1 69 1 71 7.09e-16 75.9
MsaG042325 AT1G18750.1 49.296 71 34 1 1 69 1 71 8.69e-16 75.9
MsaG042325 AT1G18750.3 49.296 71 34 1 1 69 1 71 1.01e-15 75.5
MsaG042325 AT2G03060.2 28.922 204 112 5 1 179 1 196 2.07e-15 74.7
MsaG042325 AT2G03060.3 28.922 204 112 5 1 179 1 196 2.44e-15 74.3
MsaG042325 AT2G03060.7 28.922 204 112 5 1 179 1 196 2.44e-15 74.3
MsaG042325 AT2G03060.1 28.922 204 112 5 1 179 1 196 2.44e-15 74.3
MsaG042325 AT2G24840.1 42.105 95 49 2 3 91 64 158 2.66e-15 73.2
MsaG042325 AT1G01530.1 45.588 68 37 0 1 68 6 73 3.14e-15 72.8
MsaG042325 AT1G69540.1 27.957 186 103 4 1 158 1 183 3.95e-15 73.6
MsaG042325 AT1G69540.2 27.957 186 103 4 1 158 1 183 5.85e-15 73.2
MsaG042325 AT1G65360.1 41.176 68 40 0 3 70 8 75 7.13e-14 68.6
MsaG042325 AT3G04100.1 42.857 70 40 0 5 74 17 86 8.44e-14 68.2
MsaG042325 AT1G72350.1 42.045 88 49 1 3 90 44 129 2.08e-13 67.4
MsaG042325 AT1G47760.1 36.190 105 56 2 1 101 1 98 3.01e-13 66.2
MsaG042325 AT4G18960.4 33.600 125 81 2 48 171 49 172 8.14e-13 65.1
MsaG042325 AT4G18960.3 33.600 125 81 2 48 171 49 172 9.00e-13 65.9
MsaG042325 AT4G18960.2 33.600 125 81 2 48 171 49 172 9.00e-13 65.9
MsaG042325 AT1G28460.1 47.761 67 35 0 5 71 11 77 1.13e-12 64.7
MsaG042325 AT1G29962.1 46.269 67 36 0 5 71 11 77 2.96e-12 63.5
MsaG042325 AT1G69120.3 36.792 106 66 1 66 171 5 109 1.42e-11 61.6
MsaG042325 AT1G28450.1 43.284 67 38 0 5 71 11 77 9.87e-11 59.3

Find 35 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCGTCTTGTTCTTGTTTC+TGG 0.103462 8:-20197874 None:intergenic
CGGTATCGTTCAATCGTTTC+TGG 0.172599 8:-20188219 None:intergenic
CATACCCTCAGGAAACTCTT+AGG 0.320734 8:+20196228 MsaT042325.1:intron
ACATTCTCAAAGAGGAGAAA+TGG 0.421788 8:+20182913 MsaT042325.1:CDS
TCAGTTTCCACATCTGAACT+TGG 0.431400 8:-20197835 None:intergenic
GGACTGCTTTGATCTGCATA+AGG 0.435299 8:-20197814 None:intergenic
TCCCTAACAAGCTACACCTT+TGG 0.439290 8:-20197901 None:intergenic
AAACTCTTAGGAGAAGGTCT+AGG 0.447821 8:+20196240 MsaT042325.1:CDS
GGAACAAATTGAGCAGCTAA+TGG 0.451071 8:+20196980 MsaT042325.1:CDS
GAGAAATGGTTTGTTGAAGA+AGG 0.485283 8:+20182927 MsaT042325.1:CDS
GTGGAAACTGAATTGTTCAT+TGG 0.485974 8:+20197847 MsaT042325.1:CDS
AATTGAGCAGCTAATGGAAA+AGG 0.487373 8:+20196986 MsaT042325.1:CDS
CGTCTTGTTCTTGTTTCTGG+AGG 0.494655 8:-20197871 None:intergenic
TTATATATTACAGCAATTGA+AGG 0.502150 8:+20196055 MsaT042325.1:intron
TCAACTGATTCAGATGGTGT+TGG 0.512523 8:-20188267 None:intergenic
TTTATGAATTTGCTAGCTCT+AGG 0.521973 8:+20183016 MsaT042325.1:CDS
ACAAAAGATAGAACAACAGT+TGG 0.536965 8:+20196284 MsaT042325.1:CDS
AACTCTTAGGAGAAGGTCTA+GGG 0.544433 8:+20196241 MsaT042325.1:CDS
AAATGCCATGCTCACGGAGA+AGG 0.547063 8:+20197437 MsaT042325.1:CDS
AATTCATAAAGCCTCCCTCT+TGG 0.547865 8:-20183003 None:intergenic
GACAAGTAACATTCTCAAAG+AGG 0.550887 8:+20182905 MsaT042325.1:CDS
TGAATCAGTTGAAAATACTC+AGG 0.553467 8:+20188278 MsaT042325.1:CDS
TGTTGGAGTGCTATTAATCC+TGG 0.562354 8:-20188250 None:intergenic
ATCAGTGTTGTGTGATGCTG+AGG 0.567431 8:+20182960 MsaT042325.1:CDS
TGCTGAAAATGCCATGCTCA+CGG 0.570110 8:+20197431 MsaT042325.1:CDS
CTCAGGAAACTCTTAGGAGA+AGG 0.570268 8:+20196234 MsaT042325.1:intron
ATTTACCTTCTCCGTGAGCA+TGG 0.576085 8:-20197442 None:intergenic
AACGATACCGCAATCATACC+AGG 0.576369 8:+20188232 MsaT042325.1:CDS
AAGCAGTCCAAGTTCAGATG+TGG 0.601808 8:+20197828 MsaT042325.1:CDS
AACAAGACGCATTTCTCCAA+AGG 0.605530 8:+20197885 MsaT042325.1:CDS
GTATGGTAACTATTCATCAC+AGG 0.605994 8:+20197750 MsaT042325.1:intron
ACCTTCTTGAGACTTCAAAA+CGG 0.611696 8:+20196108 MsaT042325.1:CDS
TTCATCACAGGAAGAAACAA+AGG 0.613250 8:+20197762 MsaT042325.1:CDS
ACACAACACTGATAACTCAA+AGG 0.638291 8:-20182950 None:intergenic
TATTAATCCTGGTATGATTG+CGG 0.644304 8:-20188239 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 20182856 20197912 20182856 ID=MsaG042325
Chr8 mRNA 20182856 20197912 20182856 ID=MsaT042325.1;Parent=MsaG042325
Chr8 exon 20182856 20183037 20182856 ID=MsaT042325.1.exon1;Parent=MsaT042325.1
Chr8 CDS 20182856 20183037 20182856 ID=cds.MsaT042325.1;Parent=MsaT042325.1
Chr8 exon 20188215 20188299 20188215 ID=MsaT042325.1.exon2;Parent=MsaT042325.1
Chr8 CDS 20188215 20188299 20188215 ID=cds.MsaT042325.1;Parent=MsaT042325.1
Chr8 exon 20196068 20196129 20196068 ID=MsaT042325.1.exon3;Parent=MsaT042325.1
Chr8 CDS 20196068 20196129 20196068 ID=cds.MsaT042325.1;Parent=MsaT042325.1
Chr8 exon 20196239 20196338 20196239 ID=MsaT042325.1.exon4;Parent=MsaT042325.1
Chr8 CDS 20196239 20196338 20196239 ID=cds.MsaT042325.1;Parent=MsaT042325.1
Chr8 exon 20196966 20197007 20196966 ID=MsaT042325.1.exon5;Parent=MsaT042325.1
Chr8 CDS 20196966 20197007 20196966 ID=cds.MsaT042325.1;Parent=MsaT042325.1
Chr8 exon 20197417 20197458 20197417 ID=MsaT042325.1.exon6;Parent=MsaT042325.1
Chr8 CDS 20197417 20197458 20197417 ID=cds.MsaT042325.1;Parent=MsaT042325.1
Chr8 exon 20197751 20197912 20197751 ID=MsaT042325.1.exon7;Parent=MsaT042325.1
Chr8 CDS 20197751 20197912 20197751 ID=cds.MsaT042325.1;Parent=MsaT042325.1
Gene Sequence

>MsaT042325.1

ATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAACGCAACAAGTAGACAAGTAACATTCTCAAAGAGGAGAAATGGTTTGTTGAAGAAGGCCTTTGAGTTATCAGTGTTGTGTGATGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGGCTTTATGAATTTGCTAGCTCTAGCATTCCAGAAACGATTGAACGATACCGCAATCATACCAGGATTAATAGCACTCCAACACCATCTGAATCAGTTGAAAATACTCAGCAATTGAAGGAAGAAGCAGAAAACATGATGAAAAAGATCGACCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAAGGTCTAGGGTCTTGTTCCATTGATGAACTACAAAAGATAGAACAACAGTTGGAGAGAAGTATAAGCAAAATTCGCGCAAAAAAGACTCAGGTTTTCAGGGAACAAATTGAGCAGCTAATGGAAAAGGAAAAAACCCTAGTTGCTGAAAATGCCATGCTCACGGAGAAGTATGGTAACTATTCATCACAGGAAGAAACAAAGGATCAGAGAGAAAATATAGCTGAAGCTGAACCTTATGCAGATCAAAGCAGTCCAAGTTCAGATGTGGAAACTGAATTGTTCATTGGTCCTCCAGAAACAAGAACAAGACGCATTTCTCCAAAGGTGTAG
Protein sequence

>MsaT042325.1

MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSIPETIERYRNHTRINSTPTPSESVENTQQLKEEAENMMKKIDLLETSKRKLLGEGLGSCSIDELQKIEQQLERSISKIRAKKTQVFREQIEQLMEKEKTLVAENAMLTEKYGNYSSQEETKDQRENIAEAEPYADQSSPSSDVETELFIGPPETRTRRISPKV*