AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG042327


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042327 MtrunA17_Chr8g0351031 95.089 224 11 0 1 224 1 224 5.89e-155 428
MsaG042327 MtrunA17_Chr8g0351041 91.925 161 13 0 1 161 1 161 2.55e-105 300
MsaG042327 MtrunA17_Chr7g0246431 68.396 212 61 4 1 211 1 207 2.78e-96 280
MsaG042327 MtrunA17_Chr4g0057151 57.078 219 75 4 1 216 1 203 5.54e-76 228
MsaG042327 MtrunA17_Chr3g0097101 44.340 212 110 3 1 210 16 221 4.85e-53 171
MsaG042327 MtrunA17_Chr2g0284911 50.888 169 82 1 3 171 18 185 7.94e-52 168
MsaG042327 MtrunA17_Chr3g0077501 48.538 171 87 1 1 171 1 170 4.13e-49 160
MsaG042327 MtrunA17_Chr8g0351051 49.405 168 84 1 1 168 1 167 5.70e-48 158
MsaG042327 MtrunA17_Chr8g0380021 47.929 169 87 1 3 171 19 186 1.91e-47 156
MsaG042327 MtrunA17_Chr8g0366231 49.112 169 84 2 1 168 1 168 2.37e-45 151
MsaG042327 MtrunA17_Chr2g0279821 46.591 176 82 3 1 171 1 169 1.47e-44 149
MsaG042327 MtrunA17_Chr5g0420091 47.159 176 83 4 1 171 1 171 2.34e-44 147
MsaG042327 MtrunA17_Chr4g0061671 45.665 173 88 3 1 171 1 169 1.56e-43 144
MsaG042327 MtrunA17_Chr7g0220111 41.096 219 115 5 1 212 1 212 1.57e-43 146
MsaG042327 MtrunA17_Chr6g0455511 40.183 219 118 5 1 212 1 213 2.67e-43 146
MsaG042327 MtrunA17_Chr4g0061691 46.471 170 89 2 1 169 1 169 4.56e-43 145
MsaG042327 MtrunA17_Chr4g0018421 44.444 171 94 1 1 170 1 171 9.48e-43 143
MsaG042327 MtrunA17_Chr3g0122251 44.944 178 95 2 1 175 1 178 4.07e-42 143
MsaG042327 MtrunA17_Chr5g0420081 41.364 220 105 5 1 213 1 203 8.50e-42 142
MsaG042327 MtrunA17_Chr5g0411691 39.024 205 121 2 1 205 1 201 6.56e-40 137
MsaG042327 MtrunA17_Chr7g0220121 43.275 171 89 3 1 168 1 166 1.41e-39 136
MsaG042327 MtrunA17_Chr4g0049541 43.678 174 90 2 1 171 1 169 7.72e-39 134
MsaG042327 MtrunA17_Chr1g0204111 39.000 200 115 2 1 194 17 215 9.15e-38 132
MsaG042327 MtrunA17_Chr4g0049901 43.931 173 82 3 1 165 27 192 9.68e-36 126
MsaG042327 MtrunA17_Chr4g0020221 47.977 173 81 3 1 168 1 169 1.32e-35 126
MsaG042327 MtrunA17_Chr6g0474371 42.529 174 95 4 1 171 1 172 4.76e-35 123
MsaG042327 MtrunA17_Chr1g0164791 37.864 206 102 5 1 195 1 191 1.15e-33 120
MsaG042327 MtrunA17_Chr5g0412461 35.371 229 127 6 1 213 1 224 2.33e-33 119
MsaG042327 MtrunA17_Chr5g0412271 36.652 221 123 7 1 214 1 211 5.62e-33 119
MsaG042327 MtrunA17_Chr3g0142191 41.875 160 83 3 1 157 1 153 6.28e-33 119
MsaG042327 MtrunA17_Chr3g0125241 37.297 185 103 4 1 178 26 204 1.50e-31 114
MsaG042327 MtrunA17_Chr5g0427401 37.853 177 105 2 1 176 1 173 2.84e-28 106
MsaG042327 MtrunA17_Chr7g0246381 75.410 61 15 0 1 61 1 61 2.03e-27 99.8
MsaG042327 MtrunA17_Chr1g0159661 35.714 168 94 5 1 165 1 157 3.97e-27 102
MsaG042327 MtrunA17_Chr8g0377561 75.862 58 14 0 1 58 1 58 1.40e-26 98.6
MsaG042327 MtrunA17_Chr5g0404951 36.571 175 97 5 1 168 1 168 2.72e-26 101
MsaG042327 MtrunA17_Chr3g0134451 33.475 236 115 6 1 205 1 225 1.49e-25 101
MsaG042327 MtrunA17_Chr5g0427921 68.333 60 19 0 1 60 1 60 5.74e-25 93.2
MsaG042327 MtrunA17_Chr2g0308251 65.217 69 24 0 1 69 1 69 6.80e-25 93.6
MsaG042327 MtrunA17_Chr1g0173161 69.355 62 19 0 1 62 1 62 1.40e-24 92.8
MsaG042327 MtrunA17_Chr5g0425191 66.102 59 20 0 1 59 1 59 4.31e-21 84.3
MsaG042327 MtrunA17_Chr4g0044071 62.712 59 22 0 1 59 1 59 8.73e-21 84.0
MsaG042327 MtrunA17_Chr8g0379021 35.000 160 87 4 3 157 13 160 1.80e-19 82.4
MsaG042327 MtrunA17_Chr1g0208581 30.045 223 126 9 3 211 10 216 4.61e-19 82.4
MsaG042327 MtrunA17_Chr1g0175601 40.385 104 60 1 1 102 1 104 1.72e-18 79.7
MsaG042327 MtrunA17_Chr1g0180591 40.566 106 57 2 1 105 1 101 2.42e-18 79.3
MsaG042327 MtrunA17_Chr2g0292791 53.731 67 31 0 3 69 10 76 2.78e-18 80.5
MsaG042327 MtrunA17_Chr4g0018951 39.167 120 67 2 14 128 24 142 3.31e-18 78.6
MsaG042327 MtrunA17_Chr1g0208561 30.180 222 127 9 3 211 10 216 3.91e-18 79.7
MsaG042327 MtrunA17_Chr3g0089141 50.746 67 33 0 3 69 10 76 5.96e-18 79.3
MsaG042327 MtrunA17_Chr1g0166611 72.917 48 13 0 13 60 17 64 1.13e-17 76.3
MsaG042327 MtrunA17_Chr1g0175611 38.462 104 62 1 1 102 1 104 3.16e-17 76.3
MsaG042327 MtrunA17_Chr8g0376821 44.828 87 43 1 1 87 1 82 3.56e-17 76.3
MsaG042327 MtrunA17_Chr2g0333981 39.286 112 65 1 1 112 11 119 3.87e-17 76.3
MsaG042327 MtrunA17_Chr3g0099411 50.746 67 33 0 3 69 10 76 4.63e-17 76.6
MsaG042327 MtrunA17_Chr8g0357771 35.577 104 65 1 1 102 1 104 6.44e-17 75.5
MsaG042327 MtrunA17_Chr8g0355091 52.239 67 32 0 3 69 10 76 6.95e-17 76.6
MsaG042327 MtrunA17_Chr1g0206721 50.746 67 33 0 3 69 10 76 7.47e-17 76.6
MsaG042327 MtrunA17_Chr1g0206701 50.746 67 33 0 3 69 10 76 1.09e-16 76.3
MsaG042327 MtrunA17_Chr1g0187361 50.746 67 33 0 3 69 10 76 1.54e-16 75.9
MsaG042327 MtrunA17_Chr3g0099421 52.239 67 32 0 3 69 35 101 1.56e-16 76.3
MsaG042327 MtrunA17_Chr2g0325971 49.254 67 34 0 3 69 10 76 2.18e-16 75.1
MsaG042327 MtrunA17_Chr1g0169761 49.275 69 35 0 1 69 1 69 2.53e-16 73.9
MsaG042327 MtrunA17_Chr1g0188671 30.660 212 107 7 3 211 48 222 2.56e-16 75.9
MsaG042327 MtrunA17_Chr5g0419601 43.373 83 42 1 3 85 10 87 2.70e-16 75.1
MsaG042327 MtrunA17_Chr5g0422421 50.746 67 33 0 3 69 10 76 3.74e-16 74.7
MsaG042327 MtrunA17_Chr1g0149391 49.254 67 34 0 3 69 10 76 4.27e-16 74.7
MsaG042327 MtrunA17_Chr1g0206991 47.761 67 35 0 3 69 10 76 5.66e-16 73.2
MsaG042327 MtrunA17_Chr2g0317451 49.254 67 34 0 3 69 10 76 6.35e-16 73.9
MsaG042327 MtrunA17_Chr2g0317481 49.254 67 34 0 3 69 10 76 6.89e-16 73.9
MsaG042327 MtrunA17_Chr4g0074101 42.529 87 45 1 1 87 1 82 9.89e-16 72.8
MsaG042327 MtrunA17_Chr4g0052061 30.137 146 91 3 1 141 1 140 1.08e-15 71.6
MsaG042327 MtrunA17_Chr4g0052081 44.928 69 38 0 1 69 1 69 6.50e-15 70.1
MsaG042327 MtrunA17_Chr5g0422941 47.761 67 35 0 3 69 10 76 7.23e-15 71.2
MsaG042327 MtrunA17_Chr2g0300421 46.269 67 36 0 3 69 10 76 1.41e-14 69.3
MsaG042327 MtrunA17_Chr3g0089151 45.714 70 36 1 2 69 7 76 1.64e-14 67.8
MsaG042327 MtrunA17_Chr8g0356071 35.577 104 62 3 1 102 1 101 1.66e-14 68.6
MsaG042327 MtrunA17_Chr5g0417661 52.830 53 25 0 1 53 56 108 1.92e-14 67.8
MsaG042327 MtrunA17_Chr2g0300441 46.154 65 35 0 5 69 12 76 6.68e-14 68.6
MsaG042327 MtrunA17_Chr1g0187351 44.928 69 38 0 11 79 1 69 1.41e-13 63.9
MsaG042327 MtrunA17_Chr3g0119901 44.776 67 37 0 3 69 10 76 1.64e-13 67.0
MsaG042327 MtrunA17_Chr3g0111841 50.000 60 29 1 7 66 1 59 2.39e-13 63.2
MsaG042327 MtrunA17_Chr1g0206691 49.153 59 30 0 11 69 1 59 3.22e-13 66.2
MsaG042327 MtrunA17_Chr4g0060841 43.662 71 38 1 1 69 1 71 4.72e-13 67.4
MsaG042327 MtrunA17_Chr4g0071601 36.735 98 59 1 15 112 25 119 6.51e-13 65.1
MsaG042327 MtrunA17_Chr3g0085241 43.284 67 38 0 3 69 42 108 8.76e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042327 AT2G45660.1 64.186 215 69 3 1 213 1 209 4.31e-91 267
MsaG042327 AT2G45660.2 73.913 161 37 2 1 159 1 158 7.03e-81 239
MsaG042327 AT4G22950.3 57.080 226 83 3 1 222 1 216 3.29e-78 234
MsaG042327 AT4G22950.1 57.080 226 83 3 1 222 1 216 3.29e-78 234
MsaG042327 AT5G62165.3 54.930 213 89 3 1 213 1 206 5.58e-75 226
MsaG042327 AT5G62165.1 54.930 213 89 3 1 213 1 206 5.58e-75 226
MsaG042327 AT5G62165.2 54.930 213 89 3 1 213 1 206 5.58e-75 226
MsaG042327 AT4G22950.2 65.497 171 57 1 1 171 1 169 5.81e-74 222
MsaG042327 AT4G11880.4 57.399 223 89 3 1 222 1 218 2.32e-71 217
MsaG042327 AT4G11880.1 57.399 223 89 3 1 222 1 218 2.32e-71 217
MsaG042327 AT5G62165.17 62.420 157 58 1 1 157 1 156 2.83e-69 209
MsaG042327 AT5G62165.12 62.420 157 58 1 1 157 1 156 2.83e-69 209
MsaG042327 AT5G62165.11 62.420 157 58 1 1 157 1 156 2.83e-69 209
MsaG042327 AT4G11880.2 65.823 158 51 2 1 157 1 156 4.15e-67 204
MsaG042327 AT4G11880.3 65.823 158 51 2 1 157 1 156 4.15e-67 204
MsaG042327 AT5G62165.10 51.174 213 83 4 1 213 1 192 7.16e-65 199
MsaG042327 AT5G62165.4 51.174 213 83 4 1 213 1 192 7.16e-65 199
MsaG042327 AT5G62165.6 59.603 151 60 1 1 151 1 150 1.06e-63 195
MsaG042327 AT5G62165.9 59.603 151 60 1 1 151 1 150 1.06e-63 195
MsaG042327 AT5G62165.7 59.603 151 60 1 1 151 1 150 1.06e-63 195
MsaG042327 AT5G62165.8 59.603 151 60 1 1 151 1 150 1.06e-63 195
MsaG042327 AT5G62165.13 59.603 151 60 1 1 151 1 150 1.06e-63 195
MsaG042327 AT5G51870.1 47.465 217 102 2 1 216 1 206 2.56e-61 191
MsaG042327 AT5G51870.4 45.982 224 107 2 1 216 1 218 1.32e-58 184
MsaG042327 AT5G51870.3 45.982 224 107 2 1 216 11 228 1.82e-58 184
MsaG042327 AT5G51860.1 43.981 216 115 1 1 216 1 210 1.34e-54 174
MsaG042327 AT5G51860.2 44.037 218 103 2 1 216 1 201 5.98e-54 172
MsaG042327 AT3G58780.5 49.123 171 86 1 1 171 22 191 5.81e-51 166
MsaG042327 AT3G58780.1 49.123 171 86 1 1 171 16 185 6.56e-51 166
MsaG042327 AT4G09960.1 50.292 171 84 1 1 171 1 170 1.22e-50 164
MsaG042327 AT4G09960.6 50.292 171 84 1 1 171 2 171 1.38e-50 164
MsaG042327 AT4G09960.5 50.292 171 84 1 1 171 11 180 2.08e-50 164
MsaG042327 AT4G18960.1 50.888 169 82 1 3 171 19 186 2.87e-50 164
MsaG042327 AT4G09960.3 50.292 171 84 1 1 171 27 196 5.01e-50 164
MsaG042327 AT2G42830.1 49.112 169 85 1 3 171 18 185 6.41e-50 163
MsaG042327 AT5G51870.2 54.483 145 66 0 1 145 1 145 1.22e-49 160
MsaG042327 AT5G51870.5 54.483 145 66 0 1 145 24 168 5.80e-49 159
MsaG042327 AT2G45650.1 50.581 172 83 1 1 172 1 170 1.07e-48 160
MsaG042327 AT2G42830.2 49.080 163 82 1 3 165 18 179 1.39e-48 160
MsaG042327 AT4G09960.2 54.545 143 64 1 1 143 1 142 6.25e-48 157
MsaG042327 AT4G09960.4 52.632 152 71 1 1 152 96 246 2.39e-47 159
MsaG042327 AT3G58780.4 53.846 143 65 1 3 145 18 159 6.26e-47 156
MsaG042327 AT2G03710.3 45.087 173 91 2 1 171 1 171 8.23e-47 153
MsaG042327 AT3G61120.1 50.311 161 77 1 1 161 1 158 2.89e-46 154
MsaG042327 AT2G03710.2 45.087 173 91 2 1 171 1 171 4.18e-46 154
MsaG042327 AT2G03710.1 45.087 173 91 2 1 171 1 171 5.00e-46 154
MsaG042327 AT3G58780.2 46.784 171 83 2 1 171 16 178 8.54e-46 152
MsaG042327 AT3G02310.1 41.441 222 107 6 1 207 1 214 2.23e-45 152
MsaG042327 AT3G58780.3 42.857 196 86 2 1 171 16 210 3.12e-45 152
MsaG042327 AT1G24260.1 50.581 172 79 5 1 168 1 170 2.08e-44 149
MsaG042327 AT1G69120.2 47.674 172 88 2 1 171 1 171 3.46e-44 148
MsaG042327 AT5G15800.1 46.629 178 81 4 1 171 1 171 3.70e-44 149
MsaG042327 AT1G24260.2 49.711 173 80 4 1 168 1 171 3.74e-44 149
MsaG042327 AT3G02310.2 46.629 178 81 4 1 171 1 171 5.67e-44 146
MsaG042327 AT5G15800.2 46.629 178 81 4 1 171 1 171 6.63e-44 148
MsaG042327 AT1G69120.1 47.674 172 88 2 1 171 1 171 1.11e-43 147
MsaG042327 AT1G26310.1 46.821 173 90 2 1 171 1 173 8.56e-43 145
MsaG042327 AT3G57230.1 42.708 192 106 3 1 192 1 188 2.64e-42 143
MsaG042327 AT3G57230.4 42.708 192 106 3 1 192 1 188 2.64e-42 143
MsaG042327 AT1G24260.3 50.617 162 73 4 1 157 1 160 3.09e-42 143
MsaG042327 AT5G60910.1 45.930 172 91 2 1 171 1 171 4.58e-42 143
MsaG042327 AT4G37940.1 43.931 173 91 3 1 171 1 169 7.35e-41 139
MsaG042327 AT3G57230.2 47.917 144 73 1 1 144 1 142 5.26e-40 134
MsaG042327 AT5G13790.2 44.643 168 88 1 1 168 1 163 2.89e-39 136
MsaG042327 AT2G22630.1 45.087 173 89 3 1 171 1 169 9.99e-39 134
MsaG042327 AT2G22630.2 45.087 173 89 3 1 171 1 169 9.99e-39 134
MsaG042327 AT3G30260.1 44.681 188 97 4 1 183 1 186 1.48e-38 134
MsaG042327 AT5G62165.14 67.442 86 28 0 1 86 1 86 7.11e-38 128
MsaG042327 AT5G13790.1 44.048 168 86 1 1 168 1 160 7.97e-38 132
MsaG042327 AT4G37940.4 42.775 173 93 3 1 171 1 169 8.45e-38 131
MsaG042327 AT4G37940.3 46.309 149 74 3 1 147 1 145 2.92e-37 128
MsaG042327 AT4G24540.1 36.161 224 125 4 1 213 1 217 1.11e-36 128
MsaG042327 AT5G23260.2 44.311 167 87 4 1 165 1 163 4.65e-36 127
MsaG042327 AT5G23260.4 44.311 167 87 4 1 165 17 179 7.07e-36 127
MsaG042327 AT2G22540.3 42.442 172 90 2 1 168 1 167 1.01e-34 124
MsaG042327 AT2G22540.1 42.442 172 90 2 1 168 1 167 1.01e-34 124
MsaG042327 AT5G10140.4 43.125 160 77 3 1 157 1 149 1.03e-33 119
MsaG042327 AT3G57390.3 39.444 180 91 3 1 168 1 174 1.17e-33 120
MsaG042327 AT3G57390.1 33.468 248 135 4 1 224 1 242 1.95e-33 121
MsaG042327 AT5G23260.1 44.311 167 82 5 1 165 17 174 3.59e-33 120
MsaG042327 AT5G23260.3 41.436 181 96 5 1 175 1 177 7.93e-33 119
MsaG042327 AT5G65060.1 39.655 174 95 3 1 173 1 165 9.13e-33 117
MsaG042327 AT2G14210.1 44.379 169 91 3 1 168 1 167 1.02e-32 119
MsaG042327 AT2G14210.2 44.379 169 91 3 1 168 1 167 1.20e-32 118
MsaG042327 AT1G71692.1 41.899 179 95 3 1 171 1 178 3.35e-32 116
MsaG042327 AT5G65060.3 40.000 170 92 3 1 169 1 161 5.75e-32 115
MsaG042327 AT5G10140.2 42.484 153 78 2 1 152 1 144 2.49e-31 113
MsaG042327 AT5G65070.1 40.314 191 97 4 1 185 1 180 3.87e-31 113
MsaG042327 AT5G10140.1 41.935 155 76 3 1 152 1 144 4.32e-31 113
MsaG042327 AT5G10140.3 42.484 153 78 2 1 152 1 144 5.21e-31 112
MsaG042327 AT5G65070.2 37.915 211 105 4 1 185 1 211 7.21e-31 114
MsaG042327 AT3G54340.1 39.877 163 88 3 1 160 1 156 1.48e-30 113
MsaG042327 AT5G65060.2 38.506 174 86 4 1 173 1 154 6.15e-30 110
MsaG042327 AT5G65050.3 38.506 174 97 3 1 173 1 165 1.80e-29 109
MsaG042327 AT2G22540.2 39.535 172 90 3 1 168 1 162 3.52e-29 109
MsaG042327 AT5G65050.2 39.053 169 93 3 1 168 1 160 5.16e-29 107
MsaG042327 AT5G65070.3 36.792 212 107 4 1 185 1 212 1.62e-28 107
MsaG042327 AT1G77080.4 40.782 179 86 3 1 173 1 165 2.71e-28 106
MsaG042327 AT1G77080.11 41.143 175 83 3 1 169 1 161 1.20e-27 103
MsaG042327 AT1G77080.5 41.143 175 83 3 1 169 1 161 1.34e-27 103
MsaG042327 AT5G65070.5 37.778 180 89 3 1 157 1 180 4.50e-27 103
MsaG042327 AT5G65050.1 39.103 156 85 3 1 155 1 147 5.83e-27 102
MsaG042327 AT5G20240.2 37.838 148 84 3 1 146 1 142 7.32e-27 101
MsaG042327 AT1G77080.2 41.618 173 89 2 1 173 1 161 7.81e-27 102
MsaG042327 AT5G20240.1 37.584 149 85 3 1 147 1 143 1.04e-26 102
MsaG042327 AT1G31140.2 38.554 166 95 2 1 159 1 166 1.18e-26 102
MsaG042327 AT5G65050.5 37.356 174 88 4 1 173 1 154 1.38e-26 101
MsaG042327 AT5G65080.2 38.919 185 104 3 1 185 8 183 2.72e-26 101
MsaG042327 AT1G31140.1 38.554 166 93 3 1 159 1 164 6.02e-26 100
MsaG042327 AT5G65080.3 37.975 158 88 3 1 157 8 156 9.67e-26 99.4
MsaG042327 AT5G65070.4 40.667 150 75 3 1 147 1 139 1.56e-25 97.8
MsaG042327 AT1G77080.8 39.583 192 97 4 1 173 1 192 1.08e-24 97.4
MsaG042327 AT1G77080.12 41.509 159 81 2 1 159 1 147 2.71e-23 92.0
MsaG042327 AT1G77980.1 29.717 212 109 5 1 174 1 210 5.14e-21 89.7
MsaG042327 AT1G22130.1 58.333 72 29 1 1 71 1 72 1.19e-20 89.0
MsaG042327 AT5G62165.15 45.192 104 51 2 110 213 56 153 6.20e-20 83.2
MsaG042327 AT5G62165.5 45.192 104 51 2 110 213 56 153 6.20e-20 83.2
MsaG042327 AT5G60440.1 32.941 170 82 5 3 156 8 161 1.97e-19 85.1
MsaG042327 AT1G77950.3 26.230 244 134 6 1 204 1 238 4.57e-19 83.2
MsaG042327 AT1G77950.2 26.230 244 134 6 1 204 1 238 4.57e-19 83.2
MsaG042327 AT1G77950.1 26.230 244 134 6 1 204 1 238 4.57e-19 83.2
MsaG042327 AT1G77950.4 26.230 244 134 6 1 204 1 238 4.57e-19 83.2
MsaG042327 AT4G37435.1 54.545 66 30 0 1 66 1 66 1.17e-17 78.2
MsaG042327 AT4G36590.1 53.623 69 32 0 3 71 8 76 1.98e-17 78.6
MsaG042327 AT3G66656.1 46.479 71 38 0 1 71 1 71 1.24e-16 75.1
MsaG042327 AT2G34440.1 44.928 69 38 0 1 69 1 69 4.22e-16 73.6
MsaG042327 AT1G18750.4 49.296 71 34 1 1 69 1 71 7.16e-16 75.9
MsaG042327 AT2G03060.2 28.986 207 108 6 1 179 1 196 7.42e-16 75.9
MsaG042327 AT1G18750.1 49.296 71 34 1 1 69 1 71 8.28e-16 75.9
MsaG042327 AT2G03060.3 28.986 207 108 6 1 179 1 196 8.57e-16 75.9
MsaG042327 AT2G03060.7 28.986 207 108 6 1 179 1 196 8.57e-16 75.9
MsaG042327 AT2G03060.1 28.986 207 108 6 1 179 1 196 8.57e-16 75.9
MsaG042327 AT1G18750.3 49.296 71 34 1 1 69 1 71 9.54e-16 75.9
MsaG042327 AT2G24840.1 42.105 95 49 2 3 91 64 158 2.48e-15 73.2
MsaG042327 AT1G01530.1 45.588 68 37 0 1 68 6 73 3.08e-15 72.8
MsaG042327 AT1G69540.1 28.022 182 100 4 1 154 1 179 1.32e-14 72.0
MsaG042327 AT1G69540.2 28.022 182 100 4 1 154 1 179 2.18e-14 71.6
MsaG042327 AT1G65360.1 41.176 68 40 0 3 70 8 75 7.05e-14 68.6
MsaG042327 AT3G04100.1 42.857 70 40 0 5 74 17 86 7.94e-14 68.2
MsaG042327 AT1G72350.1 42.045 88 49 1 3 90 44 129 2.08e-13 67.4
MsaG042327 AT4G18960.4 33.600 125 81 2 48 171 49 172 3.03e-13 66.2
MsaG042327 AT4G18960.3 33.600 125 81 2 48 171 49 172 4.21e-13 66.6
MsaG042327 AT4G18960.2 33.600 125 81 2 48 171 49 172 4.21e-13 66.6
MsaG042327 AT1G47760.1 32.456 114 67 1 1 104 1 114 4.62e-13 65.5
MsaG042327 AT1G28460.1 47.761 67 35 0 5 71 11 77 1.19e-12 64.3
MsaG042327 AT1G29962.1 46.269 67 36 0 5 71 11 77 2.87e-12 63.5
MsaG042327 AT1G69120.3 35.849 106 67 1 66 171 5 109 3.16e-11 60.8
MsaG042327 AT1G28450.1 43.284 67 38 0 5 71 11 77 9.38e-11 59.3

Find 34 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCGTCTTGTTCTTGTTTC+TGG 0.103462 8:-20230488 None:intergenic
CGGTATCGTTCAATCGTTTC+TGG 0.172599 8:-20220867 None:intergenic
CATACCCTCAGGAAACTCTT+AGG 0.320734 8:+20228839 MsaT042327.1:intron
ACATTCTCAAAGAGAAGAAA+TGG 0.428741 8:+20211343 MsaT042327.1:CDS
TCAGTTTCCACATCTGAACT+TGG 0.431400 8:-20230449 None:intergenic
GGACTGCTTTGATCTGCATA+AGG 0.435299 8:-20230428 None:intergenic
TCCCTAACAAGCTACACCTT+TGG 0.439290 8:-20230515 None:intergenic
AAACTCTTAGGAGAAGGTCT+AGG 0.447821 8:+20228851 MsaT042327.1:CDS
GTGGAAACTGAATTGTTCAT+TGG 0.485974 8:+20230461 MsaT042327.1:CDS
AATTGAGCAGCTAAAGGAAA+AGG 0.487373 8:+20229598 MsaT042327.1:CDS
CGTCTTGTTCTTGTTTCTGG+AGG 0.494655 8:-20230485 None:intergenic
TTATATATTACAGCAATTGA+AGG 0.502150 8:+20228679 MsaT042327.1:intron
TCAACTGATTCAGATGGTGT+TGG 0.512523 8:-20220915 None:intergenic
ACAAAAGATAGAACAACAGT+TGG 0.536965 8:+20228895 MsaT042327.1:CDS
AACTCTTAGGAGAAGGTCTA+GGG 0.544433 8:+20228852 MsaT042327.1:CDS
AAATGCCATGCTCACGGAGA+AGG 0.547063 8:+20230049 MsaT042327.1:CDS
GGAACAAATTGAGCAGCTAA+AGG 0.548309 8:+20229592 MsaT042327.1:CDS
TGAATCAGTTGAAAATACTC+AGG 0.553467 8:+20220926 MsaT042327.1:CDS
TGTTGGAGTGCTATTAATCC+TGG 0.562354 8:-20220898 None:intergenic
TGCTGAAAATGCCATGCTCA+CGG 0.570110 8:+20230043 MsaT042327.1:CDS
CTCAGGAAACTCTTAGGAGA+AGG 0.570268 8:+20228845 MsaT042327.1:intron
AATTCATATAGCCTCCCTCT+TGG 0.571136 8:-20211433 None:intergenic
ACACAACACTGATAATTCAA+AGG 0.574104 8:-20211380 None:intergenic
ATTTACCTTCTCCGTGAGCA+TGG 0.576085 8:-20230054 None:intergenic
AACGATACCGCAATCATACC+AGG 0.576369 8:+20220880 MsaT042327.1:CDS
TATATGAATTTGCTAGCTCT+AGG 0.581552 8:+20211446 MsaT042327.1:CDS
ATCAGTGTTGTGTGATGCTG+AGG 0.585355 8:+20211390 MsaT042327.1:CDS
ACCTTCTTGAGACTTCAAAA+CGG 0.589369 8:+20228732 MsaT042327.1:CDS
AAGCAGTCCAAGTTCAGATG+TGG 0.601808 8:+20230442 MsaT042327.1:CDS
AACAAGACGCATTTCTCCAA+AGG 0.605530 8:+20230499 MsaT042327.1:CDS
GTATGGTAACTATTCATCAC+AGG 0.605994 8:+20230364 MsaT042327.1:intron
TTCATCACAGGAAGAAACAA+AGG 0.613250 8:+20230376 MsaT042327.1:CDS
GTATAGAGAACGCAACAAGT+AGG 0.642404 8:+20211314 MsaT042327.1:CDS
TATTAATCCTGGTATGATTG+CGG 0.644304 8:-20220887 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 20211286 20230526 20211286 ID=MsaG042327
Chr8 mRNA 20211286 20230526 20211286 ID=MsaT042327.1;Parent=MsaG042327
Chr8 exon 20211286 20211467 20211286 ID=MsaT042327.1.exon1;Parent=MsaT042327.1
Chr8 CDS 20211286 20211467 20211286 ID=cds.MsaT042327.1;Parent=MsaT042327.1
Chr8 exon 20220863 20220947 20220863 ID=MsaT042327.1.exon2;Parent=MsaT042327.1
Chr8 CDS 20220863 20220947 20220863 ID=cds.MsaT042327.1;Parent=MsaT042327.1
Chr8 exon 20228692 20228753 20228692 ID=MsaT042327.1.exon3;Parent=MsaT042327.1
Chr8 CDS 20228692 20228753 20228692 ID=cds.MsaT042327.1;Parent=MsaT042327.1
Chr8 exon 20228850 20228949 20228850 ID=MsaT042327.1.exon4;Parent=MsaT042327.1
Chr8 CDS 20228850 20228949 20228850 ID=cds.MsaT042327.1;Parent=MsaT042327.1
Chr8 exon 20229578 20229619 20229578 ID=MsaT042327.1.exon5;Parent=MsaT042327.1
Chr8 CDS 20229578 20229619 20229578 ID=cds.MsaT042327.1;Parent=MsaT042327.1
Chr8 exon 20230029 20230070 20230029 ID=MsaT042327.1.exon6;Parent=MsaT042327.1
Chr8 CDS 20230029 20230070 20230029 ID=cds.MsaT042327.1;Parent=MsaT042327.1
Chr8 exon 20230365 20230526 20230365 ID=MsaT042327.1.exon7;Parent=MsaT042327.1
Chr8 CDS 20230365 20230526 20230365 ID=cds.MsaT042327.1;Parent=MsaT042327.1
Gene Sequence

>MsaT042327.1

ATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTCTCAAAGAGAAGAAATGGTTTGTTGAAGAAAGCCTTTGAATTATCAGTGTTGTGTGATGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGGCTATATGAATTTGCTAGCTCTAGCATTCCAGAAACGATTGAACGATACCGCAATCATACCAGGATTAATAGCACTCCAACACCATCTGAATCAGTTGAAAATACTCAGCAATTGAAGGAAGAAGCAGAAAACATGATGAAAGAGATTGACCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAAGGTCTAGGGTCTTGTTCCATTGATGAACTACAAAAGATAGAACAACAGTTGGAGAGAAGTATAAGCAAAATTCGCGCAAAAAAGACTCAGGTTTTCAGGGAACAAATTGAGCAGCTAAAGGAAAAGGAAAAAACCCTAGTTGCTGAAAATGCCATGCTCACGGAGAAGTATGGTAACTATTCATCACAGGAAGAAACAAAGGATCAGAGAGAAAATATAGCTGAAGCTGAACCTTATGCAGATCAAAGCAGTCCAAGTTCAGATGTGGAAACTGAATTGTTCATTGGTCCTCCAGAAACAAGAACAAGACGCATTTCTCCAAAGGTGTAG

Protein sequence

>MsaT042327.1

MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSIPETIERYRNHTRINSTPTPSESVENTQQLKEEAENMMKEIDLLETSKRKLLGEGLGSCSIDELQKIEQQLERSISKIRAKKTQVFREQIEQLKEKEKTLVAENAMLTEKYGNYSSQEETKDQRENIAEAEPYADQSSPSSDVETELFIGPPETRTRRISPKV*