AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG042329

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042329 MtrunA17_Chr8g0351031 93.750 224 14 0 10 233 1 224 2.81e-152 422
MsaG042329 MtrunA17_Chr8g0351041 90.683 161 15 0 10 170 1 161 3.49e-103 295
MsaG042329 MtrunA17_Chr7g0246431 67.453 212 65 3 10 221 1 208 2.19e-94 275
MsaG042329 MtrunA17_Chr4g0057151 58.716 218 73 4 10 225 1 203 7.14e-76 228
MsaG042329 MtrunA17_Chr3g0097101 44.091 220 113 4 2 219 10 221 9.03e-52 168
MsaG042329 MtrunA17_Chr2g0284911 49.419 172 86 1 9 180 15 185 8.63e-50 163
MsaG042329 MtrunA17_Chr8g0351051 43.049 223 109 5 10 219 1 218 3.86e-49 161
MsaG042329 MtrunA17_Chr3g0077501 47.368 171 89 1 10 180 1 170 6.70e-47 154
MsaG042329 MtrunA17_Chr8g0380021 45.556 180 97 1 1 180 8 186 1.25e-46 154
MsaG042329 MtrunA17_Chr8g0366231 50.292 171 79 3 10 177 1 168 2.83e-44 148
MsaG042329 MtrunA17_Chr5g0420091 46.591 176 84 3 10 180 1 171 5.17e-43 144
MsaG042329 MtrunA17_Chr4g0061691 46.471 170 89 2 10 178 1 169 2.24e-42 143
MsaG042329 MtrunA17_Chr5g0420081 40.909 220 106 4 10 222 1 203 7.28e-42 142
MsaG042329 MtrunA17_Chr4g0061671 45.000 180 79 4 10 180 1 169 1.69e-41 139
MsaG042329 MtrunA17_Chr2g0279821 44.886 176 85 3 10 180 1 169 2.38e-41 141
MsaG042329 MtrunA17_Chr4g0018421 44.571 175 88 3 10 179 1 171 4.59e-41 139
MsaG042329 MtrunA17_Chr3g0122251 44.382 178 96 2 10 184 1 178 1.06e-40 139
MsaG042329 MtrunA17_Chr6g0455511 46.023 176 84 4 10 180 1 170 1.45e-40 139
MsaG042329 MtrunA17_Chr7g0220111 45.763 177 83 4 10 180 1 170 3.18e-40 138
MsaG042329 MtrunA17_Chr7g0220121 43.860 171 88 3 10 177 1 166 2.52e-39 136
MsaG042329 MtrunA17_Chr4g0049541 39.535 215 117 3 10 216 1 210 9.36e-39 134
MsaG042329 MtrunA17_Chr1g0204111 37.900 219 134 2 10 228 17 233 4.91e-38 133
MsaG042329 MtrunA17_Chr5g0411691 38.537 205 122 3 10 214 1 201 4.80e-37 130
MsaG042329 MtrunA17_Chr4g0020221 40.506 237 113 6 10 222 1 233 6.04e-36 127
MsaG042329 MtrunA17_Chr4g0049901 39.908 218 122 4 8 222 25 236 3.22e-35 125
MsaG042329 MtrunA17_Chr6g0474371 41.279 172 100 1 10 180 1 172 5.04e-34 120
MsaG042329 MtrunA17_Chr1g0164791 38.333 180 93 3 10 178 1 173 1.63e-32 118
MsaG042329 MtrunA17_Chr5g0412461 35.371 229 127 5 10 222 1 224 9.31e-32 115
MsaG042329 MtrunA17_Chr3g0142191 40.625 160 85 3 10 166 1 153 1.04e-30 113
MsaG042329 MtrunA17_Chr5g0412271 35.965 228 128 7 10 222 1 225 1.21e-30 113
MsaG042329 MtrunA17_Chr3g0125241 36.022 186 104 5 10 187 26 204 1.62e-29 109
MsaG042329 MtrunA17_Chr5g0427401 34.298 242 110 7 10 222 1 222 3.97e-29 108
MsaG042329 MtrunA17_Chr7g0246381 75.410 61 15 0 10 70 1 61 3.09e-27 99.8
MsaG042329 MtrunA17_Chr8g0377561 75.862 58 14 0 10 67 1 58 2.23e-26 98.2
MsaG042329 MtrunA17_Chr1g0159661 35.119 168 95 5 10 174 1 157 5.75e-25 97.1
MsaG042329 MtrunA17_Chr5g0404951 33.889 180 95 4 10 177 1 168 7.37e-25 98.2
MsaG042329 MtrunA17_Chr2g0308251 65.217 69 24 0 10 78 1 69 8.32e-25 93.6
MsaG042329 MtrunA17_Chr5g0427921 68.333 60 19 0 10 69 1 60 9.46e-25 92.8
MsaG042329 MtrunA17_Chr3g0134451 35.714 238 107 8 10 214 1 225 1.99e-24 98.6
MsaG042329 MtrunA17_Chr1g0173161 71.667 60 17 0 10 69 1 60 2.01e-24 92.8
MsaG042329 MtrunA17_Chr5g0425191 66.102 59 20 0 10 68 1 59 6.00e-21 84.3
MsaG042329 MtrunA17_Chr4g0044071 62.712 59 22 0 10 68 1 59 1.24e-20 84.0
MsaG042329 MtrunA17_Chr3g0089141 31.276 243 117 11 1 220 1 216 1.78e-20 86.3
MsaG042329 MtrunA17_Chr1g0208561 30.864 243 118 11 1 220 1 216 6.17e-20 85.1
MsaG042329 MtrunA17_Chr8g0379021 34.320 169 97 4 1 166 3 160 1.15e-19 83.2
MsaG042329 MtrunA17_Chr1g0208581 44.211 95 45 2 12 106 10 96 1.94e-19 83.6
MsaG042329 MtrunA17_Chr2g0292791 53.731 67 31 0 12 78 10 76 3.18e-18 80.5
MsaG042329 MtrunA17_Chr5g0419601 43.617 94 46 2 1 94 1 87 6.52e-18 79.7
MsaG042329 MtrunA17_Chr4g0018951 38.333 120 68 2 23 137 24 142 8.49e-18 77.8
MsaG042329 MtrunA17_Chr1g0166611 72.917 48 13 0 22 69 17 64 1.54e-17 76.3
MsaG042329 MtrunA17_Chr1g0188671 30.045 223 114 9 1 220 39 222 2.30e-17 79.0
MsaG042329 MtrunA17_Chr2g0333981 38.017 121 71 2 1 121 3 119 3.86e-17 76.3
MsaG042329 MtrunA17_Chr1g0175611 38.462 104 62 1 10 111 1 104 4.58e-17 75.9
MsaG042329 MtrunA17_Chr3g0099411 50.746 67 33 0 12 78 10 76 5.46e-17 76.6
MsaG042329 MtrunA17_Chr2g0325971 48.718 78 38 1 1 78 1 76 8.03e-17 76.6
MsaG042329 MtrunA17_Chr8g0355091 52.239 67 32 0 12 78 10 76 8.55e-17 76.6
MsaG042329 MtrunA17_Chr1g0175601 39.423 104 61 1 10 111 1 104 8.57e-17 75.5
MsaG042329 MtrunA17_Chr1g0206721 50.746 67 33 0 12 78 10 76 8.91e-17 76.6
MsaG042329 MtrunA17_Chr8g0376821 49.275 69 35 0 10 78 1 69 8.93e-17 75.5
MsaG042329 MtrunA17_Chr1g0187361 48.718 78 38 1 1 78 1 76 9.18e-17 76.6
MsaG042329 MtrunA17_Chr1g0206701 50.746 67 33 0 12 78 10 76 1.28e-16 76.3
MsaG042329 MtrunA17_Chr5g0422421 31.606 193 101 6 1 182 1 173 1.41e-16 76.3
MsaG042329 MtrunA17_Chr1g0169761 49.275 69 35 0 10 78 1 69 1.82e-16 74.7
MsaG042329 MtrunA17_Chr3g0099421 52.239 67 32 0 12 78 35 101 1.90e-16 76.3
MsaG042329 MtrunA17_Chr2g0317481 40.860 93 47 2 2 94 3 87 2.14e-16 75.5
MsaG042329 MtrunA17_Chr2g0317451 40.860 93 47 2 2 94 3 87 2.18e-16 75.5
MsaG042329 MtrunA17_Chr8g0357771 34.615 104 66 1 10 111 1 104 2.76e-16 73.9
MsaG042329 MtrunA17_Chr1g0180591 38.776 98 55 1 10 107 1 93 3.09e-16 73.9
MsaG042329 MtrunA17_Chr4g0074101 42.529 87 45 1 10 96 1 82 3.77e-16 73.9
MsaG042329 MtrunA17_Chr1g0149391 49.254 67 34 0 12 78 10 76 4.39e-16 74.7
MsaG042329 MtrunA17_Chr1g0206991 47.761 67 35 0 12 78 10 76 5.16e-16 73.6
MsaG042329 MtrunA17_Chr5g0422941 40.777 103 51 3 1 103 1 93 7.75e-16 73.9
MsaG042329 MtrunA17_Chr4g0052061 29.452 146 92 3 10 150 1 140 1.25e-15 71.6
MsaG042329 MtrunA17_Chr4g0052081 44.928 69 38 0 10 78 1 69 6.13e-15 70.5
MsaG042329 MtrunA17_Chr5g0417661 52.727 55 26 0 8 62 54 108 7.33e-15 68.9
MsaG042329 MtrunA17_Chr3g0119901 38.235 102 55 2 5 106 3 96 8.63e-15 70.5
MsaG042329 MtrunA17_Chr2g0300421 38.947 95 50 2 12 106 10 96 1.03e-14 69.7
MsaG042329 MtrunA17_Chr3g0089151 43.750 80 39 2 1 78 1 76 1.31e-14 68.6
MsaG042329 MtrunA17_Chr2g0300441 41.250 80 42 1 14 93 12 86 3.23e-14 69.7
MsaG042329 MtrunA17_Chr1g0187351 46.479 71 34 1 20 90 1 67 7.75e-14 64.7
MsaG042329 MtrunA17_Chr3g0085241 41.096 73 43 0 6 78 36 108 1.70e-13 67.8
MsaG042329 MtrunA17_Chr8g0356071 33.019 106 62 2 10 111 1 101 2.56e-13 65.9
MsaG042329 MtrunA17_Chr1g0206691 49.153 59 30 0 20 78 1 59 3.69e-13 66.2
MsaG042329 MtrunA17_Chr4g0060841 43.662 71 38 1 10 78 1 71 7.65e-13 67.0
MsaG042329 MtrunA17_Chr4g0071601 35.537 121 74 2 1 121 3 119 1.58e-12 63.9
MsaG042329 MtrunA17_Chr3g0111841 49.153 59 30 0 17 75 2 60 3.11e-12 60.5
MsaG042329 MtrunA17_Chr6g0457851 49.020 51 26 0 9 59 10 60 8.44e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042329 AT2G45660.1 65.116 215 67 3 10 222 1 209 6.92e-93 271
MsaG042329 AT2G45660.2 73.913 161 37 2 10 168 1 158 2.90e-80 238
MsaG042329 AT4G22950.3 56.951 223 88 3 10 231 1 216 2.00e-76 230
MsaG042329 AT4G22950.1 56.951 223 88 3 10 231 1 216 2.00e-76 230
MsaG042329 AT5G62165.3 55.399 213 88 3 10 222 1 206 1.61e-75 228
MsaG042329 AT5G62165.1 55.399 213 88 3 10 222 1 206 1.61e-75 228
MsaG042329 AT5G62165.2 55.399 213 88 3 10 222 1 206 1.61e-75 228
MsaG042329 AT4G22950.2 65.497 171 57 1 10 180 1 169 4.25e-73 220
MsaG042329 AT4G11880.4 56.951 223 90 3 10 231 1 218 1.54e-69 213
MsaG042329 AT4G11880.1 56.951 223 90 3 10 231 1 218 1.54e-69 213
MsaG042329 AT5G62165.17 63.057 157 57 1 10 166 1 156 7.53e-69 209
MsaG042329 AT5G62165.12 63.057 157 57 1 10 166 1 156 7.53e-69 209
MsaG042329 AT5G62165.11 63.057 157 57 1 10 166 1 156 7.53e-69 209
MsaG042329 AT4G11880.2 65.823 158 51 2 10 166 1 156 1.43e-66 204
MsaG042329 AT4G11880.3 65.823 158 51 2 10 166 1 156 1.43e-66 204
MsaG042329 AT5G62165.10 51.643 213 82 4 10 222 1 192 2.27e-65 201
MsaG042329 AT5G62165.4 51.643 213 82 4 10 222 1 192 2.27e-65 201
MsaG042329 AT5G62165.6 60.265 151 59 1 10 160 1 150 1.69e-63 195
MsaG042329 AT5G62165.9 60.265 151 59 1 10 160 1 150 1.69e-63 195
MsaG042329 AT5G62165.7 60.265 151 59 1 10 160 1 150 1.69e-63 195
MsaG042329 AT5G62165.8 60.265 151 59 1 10 160 1 150 1.69e-63 195
MsaG042329 AT5G62165.13 60.265 151 59 1 10 160 1 150 1.69e-63 195
MsaG042329 AT5G51870.1 47.685 216 103 1 10 225 1 206 1.24e-62 194
MsaG042329 AT5G51870.4 47.248 218 113 1 10 225 1 218 2.13e-59 187
MsaG042329 AT5G51870.3 47.248 218 113 1 10 225 11 228 3.76e-59 186
MsaG042329 AT5G51860.1 45.833 216 111 2 10 225 1 210 9.09e-56 177
MsaG042329 AT5G51860.2 45.370 216 103 2 10 225 1 201 1.32e-54 174
MsaG042329 AT5G51870.2 55.172 145 65 0 10 154 1 145 2.90e-49 159
MsaG042329 AT5G51870.5 55.172 145 65 0 10 154 24 168 1.00e-48 159
MsaG042329 AT4G09960.5 49.133 173 87 1 8 180 9 180 2.42e-48 159
MsaG042329 AT4G18960.1 48.045 179 92 1 2 180 9 186 2.83e-48 159
MsaG042329 AT4G09960.1 46.739 184 91 2 10 187 1 183 3.80e-48 158
MsaG042329 AT4G09960.6 46.739 184 91 2 10 187 2 184 4.90e-48 158
MsaG042329 AT3G58780.5 46.893 177 93 1 4 180 16 191 5.24e-48 159
MsaG042329 AT2G45650.1 50.581 172 83 1 10 181 1 170 5.95e-48 159
MsaG042329 AT4G09960.3 46.524 187 93 2 7 187 24 209 6.94e-48 159
MsaG042329 AT3G58780.1 46.893 177 93 1 4 180 10 185 6.97e-48 158
MsaG042329 AT2G42830.1 47.486 179 89 3 4 180 10 185 1.72e-47 157
MsaG042329 AT2G42830.2 47.399 173 86 3 4 174 10 179 2.64e-46 154
MsaG042329 AT4G09960.2 53.147 143 66 1 10 152 1 142 1.98e-45 151
MsaG042329 AT4G09960.4 50.980 153 74 1 9 161 95 246 6.33e-45 153
MsaG042329 AT3G61120.1 49.689 161 78 1 10 170 1 158 1.02e-44 150
MsaG042329 AT2G03710.3 44.706 170 84 3 10 174 1 165 1.64e-44 147
MsaG042329 AT2G03710.2 44.706 170 84 3 10 174 1 165 2.74e-44 149
MsaG042329 AT2G03710.1 44.706 170 84 3 10 174 1 165 2.87e-44 149
MsaG042329 AT3G58780.4 50.331 151 74 1 4 154 10 159 6.64e-44 149
MsaG042329 AT1G69120.2 48.256 172 87 2 10 180 1 171 1.62e-43 147
MsaG042329 AT1G69120.1 48.256 172 87 2 10 180 1 171 4.51e-43 146
MsaG042329 AT3G58780.2 44.633 177 90 2 4 180 10 178 8.19e-43 145
MsaG042329 AT1G24260.2 47.368 171 87 2 10 177 1 171 2.18e-42 144
MsaG042329 AT3G58780.3 41.089 202 93 2 4 180 10 210 2.83e-42 144
MsaG042329 AT1G26310.1 47.399 173 89 2 10 180 1 173 4.10e-42 144
MsaG042329 AT1G24260.1 47.701 174 81 3 10 177 1 170 6.02e-42 143
MsaG042329 AT3G02310.1 42.157 204 99 5 10 206 1 192 2.80e-41 141
MsaG042329 AT5G60910.1 45.930 172 91 2 10 180 1 171 6.99e-41 140
MsaG042329 AT5G15800.1 46.067 178 82 4 10 180 1 171 9.36e-41 140
MsaG042329 AT3G02310.2 46.067 178 82 4 10 180 1 171 1.12e-40 138
MsaG042329 AT5G15800.2 46.067 178 82 4 10 180 1 171 1.40e-40 140
MsaG042329 AT1G24260.3 48.125 160 80 2 10 166 1 160 1.59e-40 139
MsaG042329 AT3G57230.1 41.667 192 108 3 10 201 1 188 2.46e-40 139
MsaG042329 AT3G57230.4 41.667 192 108 3 10 201 1 188 2.46e-40 139
MsaG042329 AT3G57230.2 46.528 144 75 1 10 153 1 142 3.38e-38 130
MsaG042329 AT5G13790.2 45.029 171 83 2 10 177 1 163 5.96e-38 133
MsaG042329 AT5G62165.14 68.235 85 27 0 10 94 1 85 8.93e-38 128
MsaG042329 AT4G37940.1 42.529 174 92 3 10 180 1 169 8.96e-38 132
MsaG042329 AT5G13790.1 44.643 168 85 1 10 177 1 160 1.05e-37 132
MsaG042329 AT3G30260.1 44.681 188 97 4 10 192 1 186 2.44e-37 131
MsaG042329 AT5G23260.4 43.503 177 92 4 2 174 7 179 5.33e-36 128
MsaG042329 AT4G24540.1 38.222 225 119 6 10 222 1 217 5.47e-36 127
MsaG042329 AT2G22630.1 41.714 175 92 2 10 180 1 169 1.36e-35 126
MsaG042329 AT2G22630.2 41.714 175 92 2 10 180 1 169 1.36e-35 126
MsaG042329 AT5G23260.2 43.713 167 88 3 10 174 1 163 5.80e-35 125
MsaG042329 AT4G37940.4 41.379 174 94 3 10 180 1 169 8.08e-35 124
MsaG042329 AT4G37940.3 44.667 150 75 3 10 156 1 145 1.33e-34 122
MsaG042329 AT3G57390.1 36.948 249 125 9 10 233 1 242 5.98e-34 122
MsaG042329 AT5G65060.1 38.743 191 104 4 10 196 1 182 9.55e-34 120
MsaG042329 AT3G57390.3 39.524 210 103 7 10 202 1 203 1.86e-33 120
MsaG042329 AT5G23260.1 43.503 177 87 5 2 174 7 174 3.66e-33 120
MsaG042329 AT2G22540.3 35.950 242 121 5 10 222 1 237 1.18e-32 119
MsaG042329 AT2G22540.1 35.950 242 121 5 10 222 1 237 1.18e-32 119
MsaG042329 AT5G65060.3 40.000 170 92 3 10 178 1 161 1.51e-32 117
MsaG042329 AT5G10140.4 42.500 160 78 3 10 166 1 149 3.07e-32 116
MsaG042329 AT5G65070.1 39.806 206 105 5 10 209 1 193 3.97e-32 116
MsaG042329 AT5G23260.3 40.884 181 97 4 10 184 1 177 9.75e-32 116
MsaG042329 AT5G65050.3 39.655 174 95 3 10 182 1 165 2.81e-31 114
MsaG042329 AT2G14210.1 41.860 172 91 4 10 177 1 167 3.24e-31 115
MsaG042329 AT2G14210.2 41.860 172 91 4 10 177 1 167 3.94e-31 115
MsaG042329 AT5G65050.2 40.237 169 91 3 10 177 1 160 8.42e-31 112
MsaG042329 AT5G65060.2 37.696 191 95 5 10 196 1 171 9.93e-31 112
MsaG042329 AT5G10140.1 39.815 216 104 6 10 222 1 193 2.60e-30 111
MsaG042329 AT1G77080.4 42.473 186 96 3 10 194 1 176 2.95e-30 111
MsaG042329 AT3G54340.1 39.881 168 81 4 10 169 1 156 3.24e-30 112
MsaG042329 AT5G65070.2 36.726 226 115 5 10 209 1 224 3.91e-30 112
MsaG042329 AT1G71692.1 40.782 179 97 3 10 180 1 178 4.32e-30 111
MsaG042329 AT5G10140.2 41.290 155 77 3 10 161 1 144 1.06e-29 109
MsaG042329 AT5G10140.3 41.667 156 75 4 10 161 1 144 2.77e-29 108
MsaG042329 AT1G77080.11 43.529 170 86 2 10 178 1 161 6.68e-29 107
MsaG042329 AT1G77080.5 43.529 170 86 2 10 178 1 161 6.72e-29 107
MsaG042329 AT5G65050.1 40.385 156 83 3 10 164 1 147 9.89e-29 107
MsaG042329 AT5G65070.3 36.564 227 115 6 10 209 1 225 1.57e-28 108
MsaG042329 AT1G77080.2 41.081 185 96 3 10 194 1 172 2.84e-28 106
MsaG042329 AT5G65050.5 37.297 185 95 4 10 193 1 165 4.01e-28 105
MsaG042329 AT5G65080.2 37.379 206 119 4 4 209 2 197 4.60e-27 103
MsaG042329 AT5G65070.4 42.000 150 73 3 10 156 1 139 5.43e-27 101
MsaG042329 AT2G22540.2 33.884 242 121 6 10 222 1 232 5.68e-27 103
MsaG042329 AT5G65070.5 37.778 180 89 3 10 166 1 180 7.78e-27 103
MsaG042329 AT5G65080.3 37.195 164 93 2 4 166 2 156 3.18e-26 100
MsaG042329 AT1G31140.2 38.554 166 95 2 10 168 1 166 5.40e-26 100
MsaG042329 AT1G77080.8 38.028 213 94 5 10 194 1 203 1.17e-25 100
MsaG042329 AT5G20240.1 35.570 149 88 2 10 156 1 143 1.93e-24 96.7
MsaG042329 AT5G20240.2 35.811 148 87 2 10 155 1 142 2.27e-24 95.1
MsaG042329 AT1G31140.1 38.922 167 91 4 10 168 1 164 4.11e-24 95.9
MsaG042329 AT1G77080.12 42.138 159 80 2 10 168 1 147 7.63e-24 93.6
MsaG042329 AT1G77980.1 29.717 212 109 5 10 183 1 210 3.45e-21 90.5
MsaG042329 AT1G22130.1 58.333 72 29 1 10 80 1 72 1.96e-20 88.6
MsaG042329 AT5G62165.15 45.192 104 51 2 119 222 56 153 1.05e-19 82.8
MsaG042329 AT5G62165.5 45.192 104 51 2 119 222 56 153 1.05e-19 82.8
MsaG042329 AT1G77950.3 52.778 72 33 1 10 80 1 72 2.94e-18 81.3
MsaG042329 AT1G77950.2 52.778 72 33 1 10 80 1 72 2.94e-18 81.3
MsaG042329 AT1G77950.1 52.778 72 33 1 10 80 1 72 2.94e-18 81.3
MsaG042329 AT1G77950.4 52.778 72 33 1 10 80 1 72 2.94e-18 81.3
MsaG042329 AT5G60440.1 32.544 169 82 5 12 164 8 160 6.62e-18 81.3
MsaG042329 AT4G37435.1 54.545 66 30 0 10 75 1 66 1.30e-17 78.2
MsaG042329 AT4G36590.1 53.623 69 32 0 12 80 8 76 1.88e-17 79.0
MsaG042329 AT2G34440.1 30.769 156 94 3 10 151 1 156 1.21e-16 75.1
MsaG042329 AT3G66656.1 46.479 71 38 0 10 80 1 71 1.23e-16 75.5
MsaG042329 AT1G18750.4 28.947 228 126 6 10 203 1 226 6.42e-16 76.3
MsaG042329 AT1G18750.1 28.947 228 126 6 10 203 1 226 6.68e-16 76.3
MsaG042329 AT1G01530.1 45.070 71 39 0 7 77 3 73 1.35e-15 73.9
MsaG042329 AT1G18750.3 49.296 71 34 1 10 78 1 71 1.48e-15 75.5
MsaG042329 AT2G03060.2 28.293 205 114 5 10 189 1 197 3.56e-15 74.3
MsaG042329 AT2G03060.3 28.293 205 114 5 10 189 1 197 3.81e-15 73.9
MsaG042329 AT2G03060.7 28.293 205 114 5 10 189 1 197 3.81e-15 73.9
MsaG042329 AT2G03060.1 28.293 205 114 5 10 189 1 197 3.81e-15 73.9
MsaG042329 AT3G04100.1 33.333 144 76 4 4 134 7 143 4.30e-15 72.0
MsaG042329 AT2G24840.1 43.023 86 47 1 12 97 64 147 6.16e-15 72.4
MsaG042329 AT1G69540.1 28.022 182 100 4 10 163 1 179 3.74e-14 70.9
MsaG042329 AT1G69540.2 28.022 182 100 4 10 163 1 179 6.31e-14 70.5
MsaG042329 AT1G65360.1 41.176 68 40 0 12 79 8 75 7.91e-14 68.6
MsaG042329 AT1G47760.1 35.644 101 62 1 10 110 1 98 4.92e-13 65.9
MsaG042329 AT1G28460.1 47.761 67 35 0 14 80 11 77 9.08e-13 65.1
MsaG042329 AT1G72350.1 50.746 67 31 1 12 78 44 108 1.22e-12 65.5
MsaG042329 AT1G29962.1 45.946 74 38 1 9 80 4 77 2.58e-12 63.9
MsaG042329 AT1G77080.10 36.508 126 70 2 69 194 7 122 1.28e-11 60.8
MsaG042329 AT4G18960.3 32.000 125 83 2 57 180 49 172 3.99e-11 61.2
MsaG042329 AT4G18960.2 32.000 125 83 2 57 180 49 172 3.99e-11 61.2
MsaG042329 AT4G18960.4 32.000 125 83 2 57 180 49 172 4.45e-11 60.5
MsaG042329 AT1G28450.1 43.284 67 38 0 14 80 11 77 6.30e-11 60.1
MsaG042329 AT1G69120.3 36.792 106 66 1 75 180 5 109 8.30e-11 59.7

Find 34 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCGTCTTGTTCTTGTTTC+TGG 0.122694 8:-20267915 None:intergenic
CGGTATCGTTCAATCGTTTC+TGG 0.172599 8:-20263559 None:intergenic
AGCAAAGAAAAGAAATAAAA+TGG 0.314560 8:+20257805 MsaT042329.1:intron
AAACTCTTACGAGAAGGTCT+AGG 0.426270 8:+20266704 MsaT042329.1:CDS
ACATTCTCAAAGAGAAGAAA+TGG 0.428741 8:+20257881 MsaT042329.1:CDS
TCCTCAACTAGCTACACCTT+TGG 0.462501 8:-20267942 None:intergenic
AAGCAAAATTCGAGCAAGAA+AGG 0.486364 8:+20266781 MsaT042329.1:CDS
AATTGAGCAGCTAAAGGAAA+AGG 0.487373 8:+20266901 MsaT042329.1:CDS
TTATATATTACAGCAATTGA+AGG 0.500168 8:+20266516 MsaT042329.1:intron
TCAGTCTCCACATCTGAACT+TGG 0.501611 8:-20267876 None:intergenic
GTGGAGACTGAATTGTTCAT+TGG 0.509005 8:+20267888 MsaT042329.1:CDS
TGTAGAAGCAAGATGGGGTC+AGG 0.510040 8:+20257039 None:intergenic
TCAACTGATTCAGATTGTGT+TGG 0.515786 8:-20263607 None:intergenic
TGTTGGAGTGCTATTAATCC+TGG 0.519118 8:-20263590 None:intergenic
AACTCTTACGAGAAGGTCTA+GGG 0.547832 8:+20266705 MsaT042329.1:CDS
GGAACAAATTGAGCAGCTAA+AGG 0.548309 8:+20266895 MsaT042329.1:CDS
CACAGGAAGCAACAAATGAT+CGG 0.559990 8:+20267808 MsaT042329.1:CDS
TGAATCAGTTGATAATACTC+AGG 0.562525 8:+20263618 MsaT042329.1:CDS
AATTCATATAGCCTCCCTCT+TGG 0.571136 8:-20257971 None:intergenic
ACACAACACTGATAATTCAA+AGG 0.574104 8:-20257918 None:intergenic
ATTTACCTTCTCTGTGAGCA+TGG 0.576272 8:-20267481 None:intergenic
AACGATACCGCAATCATACC+AGG 0.576369 8:+20263572 MsaT042329.1:CDS
GGACTACTTTGATCTGCAGA+AGG 0.576693 8:-20267855 None:intergenic
TATATGAATTTGCTAGCTCT+AGG 0.581552 8:+20257984 MsaT042329.1:CDS
ATCAGTGTTGTGTGATGCTG+AGG 0.585355 8:+20257928 MsaT042329.1:CDS
ACCTTCTTGAGACTTCAAAA+CGG 0.589369 8:+20266569 MsaT042329.1:CDS
AAATGCCATGCTCACAGAGA+AGG 0.595558 8:+20267476 MsaT042329.1:CDS
CTCAGGAAACTCTTACGAGA+AGG 0.598632 8:+20266698 MsaT042329.1:intron
AAGTAGTCCAAGTTCAGATG+TGG 0.602735 8:+20267869 MsaT042329.1:CDS
AAAAGAAATAAAATGGTGAG+AGG 0.604770 8:+20257812 MsaT042329.1:CDS
AACAAGACGCATTTCTCCAA+AGG 0.605530 8:+20267926 MsaT042329.1:CDS
GTATGGTAACTATTCATCAC+AGG 0.605994 8:+20267791 MsaT042329.1:intron
GTATAGAGAACGCAACAAGT+AGG 0.642404 8:+20257852 MsaT042329.1:CDS
TATTAATCCTGGTATGATTG+CGG 0.644304 8:-20263579 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 20257051 20267953 20257051 ID=MsaG042329
Chr8 mRNA 20257051 20267953 20257051 ID=MsaT042329.1;Parent=MsaG042329
Chr8 exon 20257051 20257060 20257051 ID=MsaT042329.1.exon1;Parent=MsaT042329.1
Chr8 CDS 20257051 20257060 20257051 ID=cds.MsaT042329.1;Parent=MsaT042329.1
Chr8 exon 20257807 20258005 20257807 ID=MsaT042329.1.exon2;Parent=MsaT042329.1
Chr8 CDS 20257807 20258005 20257807 ID=cds.MsaT042329.1;Parent=MsaT042329.1
Chr8 exon 20263555 20263639 20263555 ID=MsaT042329.1.exon3;Parent=MsaT042329.1
Chr8 CDS 20263555 20263639 20263555 ID=cds.MsaT042329.1;Parent=MsaT042329.1
Chr8 exon 20266529 20266590 20266529 ID=MsaT042329.1.exon4;Parent=MsaT042329.1
Chr8 CDS 20266529 20266590 20266529 ID=cds.MsaT042329.1;Parent=MsaT042329.1
Chr8 exon 20266703 20266802 20266703 ID=MsaT042329.1.exon5;Parent=MsaT042329.1
Chr8 CDS 20266703 20266802 20266703 ID=cds.MsaT042329.1;Parent=MsaT042329.1
Chr8 exon 20266881 20266922 20266881 ID=MsaT042329.1.exon6;Parent=MsaT042329.1
Chr8 CDS 20266881 20266922 20266881 ID=cds.MsaT042329.1;Parent=MsaT042329.1
Chr8 exon 20267456 20267497 20267456 ID=MsaT042329.1.exon7;Parent=MsaT042329.1
Chr8 CDS 20267456 20267497 20267456 ID=cds.MsaT042329.1;Parent=MsaT042329.1
Chr8 exon 20267792 20267953 20267792 ID=MsaT042329.1.exon8;Parent=MsaT042329.1
Chr8 CDS 20267792 20267953 20267792 ID=cds.MsaT042329.1;Parent=MsaT042329.1
Gene Sequence

>MsaT042329.1

ATGGGGTCAGCAAAGAAAAGAAATAAAATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTCTCAAAGAGAAGAAATGGTTTGTTGAAGAAAGCCTTTGAATTATCAGTGTTGTGTGATGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGGCTATATGAATTTGCTAGCTCTAGCATTCCAGAAACGATTGAACGATACCGCAATCATACCAGGATTAATAGCACTCCAACACAATCTGAATCAGTTGATAATACTCAGCAATTGAAGGAAGAAGCAGAAAACATGATGAAAAAGATTGACCTTCTTGAGACTTCAAAACGGAAACTCTTACGAGAAGGTCTAGGGTCTTGTTCCATTGATGAACTACAAAAGATTGAACAACAGTTAGAGAGAAGTATAAGCAAAATTCGAGCAAGAAAGACTCAGGTTTTCAGGGAACAAATTGAGCAGCTAAAGGAAAAGGAAAAAACCCTAGTTGCTGAAAATGCCATGCTCACAGAGAAGTATGGTAACTATTCATCACAGGAAGCAACAAATGATCGGAGAGAGAATATAGCTGAAGCTGAACCTTCTGCAGATCAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGTCTTCCAGAAACAAGAACAAGACGCATTTCTCCAAAGGTGTAG
Protein sequence

>MsaT042329.1

MGSAKKRNKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSIPETIERYRNHTRINSTPTQSESVDNTQQLKEEAENMMKKIDLLETSKRKLLREGLGSCSIDELQKIEQQLERSISKIRARKTQVFREQIEQLKEKEKTLVAENAMLTEKYGNYSSQEATNDRRENIAEAEPSADQSSPSSDVETELFIGLPETRTRRISPKV*