AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG042334

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042334 MtrunA17_Chr8g0351031 89.732 224 23 0 1 224 1 224 5.69e-145 403
MsaG042334 MtrunA17_Chr8g0351041 95.031 161 8 0 1 161 1 161 2.77e-108 308
MsaG042334 MtrunA17_Chr7g0246431 65.094 212 70 3 1 212 1 208 6.71e-91 266
MsaG042334 MtrunA17_Chr4g0057151 55.300 217 82 3 1 216 1 203 5.93e-72 218
MsaG042334 MtrunA17_Chr3g0097101 42.925 212 113 3 1 210 16 221 9.46e-49 160
MsaG042334 MtrunA17_Chr2g0279821 47.727 176 80 3 1 171 1 169 6.41e-48 157
MsaG042334 MtrunA17_Chr2g0284911 50.968 155 75 1 3 157 18 171 7.79e-48 158
MsaG042334 MtrunA17_Chr3g0077501 42.857 203 111 2 1 203 1 198 1.04e-47 156
MsaG042334 MtrunA17_Chr8g0351051 47.619 168 87 1 1 168 1 167 9.90e-46 152
MsaG042334 MtrunA17_Chr8g0380021 48.387 155 79 1 3 157 19 172 7.46e-45 150
MsaG042334 MtrunA17_Chr8g0366231 48.193 166 84 2 1 165 1 165 1.70e-43 146
MsaG042334 MtrunA17_Chr4g0061691 46.471 170 89 2 1 169 1 169 3.02e-43 145
MsaG042334 MtrunA17_Chr5g0420091 46.471 170 81 3 1 165 1 165 7.03e-43 144
MsaG042334 MtrunA17_Chr4g0061671 43.575 179 97 3 1 178 1 176 1.02e-42 142
MsaG042334 MtrunA17_Chr4g0049541 44.828 174 88 2 1 171 1 169 4.07e-42 142
MsaG042334 MtrunA17_Chr5g0411691 43.429 175 88 2 1 171 1 168 1.28e-41 141
MsaG042334 MtrunA17_Chr7g0220121 44.706 170 90 2 1 169 1 167 6.33e-41 140
MsaG042334 MtrunA17_Chr1g0204111 37.838 222 130 2 1 219 17 233 7.57e-41 140
MsaG042334 MtrunA17_Chr5g0420081 40.639 219 108 5 1 213 1 203 2.69e-40 138
MsaG042334 MtrunA17_Chr6g0455511 40.476 210 108 4 1 201 1 202 1.39e-39 136
MsaG042334 MtrunA17_Chr7g0220111 41.624 197 94 4 1 184 1 189 1.62e-39 136
MsaG042334 MtrunA17_Chr4g0018421 42.105 171 98 1 1 170 1 171 2.95e-39 134
MsaG042334 MtrunA17_Chr3g0122251 42.697 178 99 2 1 175 1 178 5.27e-39 135
MsaG042334 MtrunA17_Chr4g0049901 38.182 220 119 5 1 213 27 236 5.61e-37 129
MsaG042334 MtrunA17_Chr5g0412461 38.326 227 123 6 1 213 1 224 4.74e-36 126
MsaG042334 MtrunA17_Chr6g0474371 42.012 169 90 2 1 161 1 169 1.10e-35 124
MsaG042334 MtrunA17_Chr5g0412271 42.941 170 92 3 1 168 1 167 9.88e-35 123
MsaG042334 MtrunA17_Chr3g0142191 42.500 160 82 3 1 157 1 153 4.71e-33 119
MsaG042334 MtrunA17_Chr4g0020221 45.402 174 84 4 1 167 1 170 1.32e-32 118
MsaG042334 MtrunA17_Chr1g0164791 37.379 206 103 7 1 195 1 191 1.92e-32 117
MsaG042334 MtrunA17_Chr3g0125241 39.181 171 92 4 1 169 26 186 2.37e-31 114
MsaG042334 MtrunA17_Chr5g0427401 35.950 242 106 11 1 213 1 222 1.71e-28 107
MsaG042334 MtrunA17_Chr5g0404951 36.066 183 87 4 1 168 1 168 1.38e-27 105
MsaG042334 MtrunA17_Chr7g0246381 75.410 61 15 0 1 61 1 61 2.58e-27 99.8
MsaG042334 MtrunA17_Chr8g0377561 75.862 58 14 0 1 58 1 58 2.10e-26 98.2
MsaG042334 MtrunA17_Chr1g0159661 34.302 172 99 4 1 169 1 161 6.97e-26 99.4
MsaG042334 MtrunA17_Chr5g0427921 68.333 60 19 0 1 60 1 60 8.00e-25 92.8
MsaG042334 MtrunA17_Chr2g0308251 65.217 69 24 0 1 69 1 69 1.02e-24 93.2
MsaG042334 MtrunA17_Chr1g0173161 69.355 62 19 0 1 62 1 62 1.91e-24 92.4
MsaG042334 MtrunA17_Chr3g0134451 32.051 234 121 7 1 205 1 225 2.31e-23 95.5
MsaG042334 MtrunA17_Chr5g0425191 66.102 59 20 0 1 59 1 59 4.95e-21 84.3
MsaG042334 MtrunA17_Chr4g0044071 63.793 58 21 0 1 58 1 58 1.20e-20 83.6
MsaG042334 MtrunA17_Chr8g0379021 35.000 160 87 4 3 157 13 160 1.25e-19 82.8
MsaG042334 MtrunA17_Chr2g0292791 50.000 78 39 0 3 80 10 87 1.71e-18 80.9
MsaG042334 MtrunA17_Chr1g0208581 50.725 69 34 0 3 71 10 78 2.53e-18 80.5
MsaG042334 MtrunA17_Chr4g0018951 38.028 142 73 4 14 155 24 150 4.04e-18 78.6
MsaG042334 MtrunA17_Chr3g0089141 50.725 69 34 0 3 71 10 78 4.11e-18 79.7
MsaG042334 MtrunA17_Chr1g0208561 50.725 69 34 0 3 71 10 78 4.38e-18 79.7
MsaG042334 MtrunA17_Chr2g0333981 40.179 112 64 1 1 112 11 119 8.91e-18 77.8
MsaG042334 MtrunA17_Chr1g0166611 72.917 48 13 0 13 60 17 64 1.40e-17 76.3
MsaG042334 MtrunA17_Chr5g0422421 33.333 138 81 1 3 129 10 147 1.95e-17 78.2
MsaG042334 MtrunA17_Chr8g0355091 48.718 78 40 0 3 80 10 87 3.47e-17 77.4
MsaG042334 MtrunA17_Chr3g0099411 50.725 69 34 0 3 71 10 78 3.77e-17 77.0
MsaG042334 MtrunA17_Chr1g0206721 47.436 78 41 0 3 80 10 87 4.57e-17 77.0
MsaG042334 MtrunA17_Chr1g0206701 38.136 118 70 2 3 119 10 125 5.49e-17 77.0
MsaG042334 MtrunA17_Chr1g0149391 46.154 78 42 0 3 80 10 87 6.09e-17 77.0
MsaG042334 MtrunA17_Chr5g0419601 39.623 106 60 2 3 104 10 115 7.24e-17 76.6
MsaG042334 MtrunA17_Chr1g0175611 40.625 96 55 1 1 94 1 96 7.43e-17 75.1
MsaG042334 MtrunA17_Chr1g0187361 50.725 69 34 0 3 71 10 78 9.74e-17 76.3
MsaG042334 MtrunA17_Chr3g0099421 32.484 157 97 3 3 156 35 185 9.79e-17 76.6
MsaG042334 MtrunA17_Chr8g0376821 49.275 69 35 0 1 69 1 69 1.15e-16 75.1
MsaG042334 MtrunA17_Chr1g0180591 39.796 98 54 1 1 98 1 93 1.32e-16 74.7
MsaG042334 MtrunA17_Chr2g0325971 49.275 69 35 0 3 71 10 78 1.50e-16 75.5
MsaG042334 MtrunA17_Chr1g0206991 44.872 78 43 0 3 80 10 87 1.83e-16 74.3
MsaG042334 MtrunA17_Chr1g0188671 50.725 69 34 0 3 71 48 116 2.08e-16 75.9
MsaG042334 MtrunA17_Chr1g0169761 49.275 69 35 0 1 69 1 69 3.05e-16 73.6
MsaG042334 MtrunA17_Chr2g0317451 49.275 69 35 0 3 71 10 78 4.14e-16 74.7
MsaG042334 MtrunA17_Chr2g0317481 49.275 69 35 0 3 71 10 78 4.23e-16 74.7
MsaG042334 MtrunA17_Chr4g0074101 42.529 87 45 1 1 87 1 82 4.57e-16 73.6
MsaG042334 MtrunA17_Chr8g0357771 46.377 69 37 0 1 69 1 69 5.50e-16 73.2
MsaG042334 MtrunA17_Chr1g0175601 40.625 96 55 1 1 94 1 96 1.06e-15 72.4
MsaG042334 MtrunA17_Chr5g0422941 40.000 105 53 2 3 105 10 106 1.92e-15 72.8
MsaG042334 MtrunA17_Chr4g0052081 44.928 69 38 0 1 69 1 69 6.11e-15 70.1
MsaG042334 MtrunA17_Chr2g0300421 46.377 69 37 0 3 71 10 78 8.61e-15 69.7
MsaG042334 MtrunA17_Chr2g0300441 30.556 144 87 2 5 136 12 154 1.58e-14 70.1
MsaG042334 MtrunA17_Chr4g0052061 30.435 138 83 4 1 132 1 131 1.71e-14 68.6
MsaG042334 MtrunA17_Chr3g0089151 45.714 70 36 1 2 69 7 76 1.74e-14 67.8
MsaG042334 MtrunA17_Chr5g0417661 52.830 53 25 0 1 53 56 108 2.70e-14 67.4
MsaG042334 MtrunA17_Chr1g0187351 46.377 69 37 0 11 79 1 69 4.06e-14 65.1
MsaG042334 MtrunA17_Chr3g0119901 41.053 95 48 2 3 97 10 96 5.09e-14 68.2
MsaG042334 MtrunA17_Chr1g0206691 45.714 70 38 0 11 80 1 70 1.54e-13 67.4
MsaG042334 MtrunA17_Chr8g0356071 35.789 95 59 2 1 93 1 95 2.20e-13 65.9
MsaG042334 MtrunA17_Chr4g0060841 43.662 71 38 1 1 69 1 71 7.76e-13 66.6
MsaG042334 MtrunA17_Chr5g0427961 35.652 115 71 2 60 173 4 116 8.33e-13 64.3
MsaG042334 MtrunA17_Chr4g0071601 37.755 98 58 1 15 112 25 119 8.83e-13 64.7
MsaG042334 MtrunA17_Chr3g0085241 43.284 67 38 0 3 69 42 108 1.02e-12 65.5
MsaG042334 MtrunA17_Chr7g0238991 30.178 169 103 4 2 158 20 185 1.21e-12 65.1
MsaG042334 MtrunA17_Chr3g0111841 49.153 59 30 0 8 66 2 60 2.67e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042334 AT2G45660.1 64.186 215 69 3 1 213 1 209 3.28e-89 262
MsaG042334 AT2G45660.2 72.050 161 40 2 1 159 1 158 1.64e-77 230
MsaG042334 AT5G62165.3 55.349 215 85 5 1 213 1 206 5.46e-74 223
MsaG042334 AT5G62165.1 55.349 215 85 5 1 213 1 206 5.46e-74 223
MsaG042334 AT5G62165.2 55.349 215 85 5 1 213 1 206 5.46e-74 223
MsaG042334 AT4G22950.3 54.386 228 89 4 1 223 1 218 9.00e-73 220
MsaG042334 AT4G22950.1 54.386 228 89 4 1 223 1 218 9.00e-73 220
MsaG042334 AT4G22950.2 62.573 171 62 1 1 171 1 169 2.15e-69 210
MsaG042334 AT5G62165.17 61.783 157 59 1 1 157 1 156 1.78e-67 205
MsaG042334 AT5G62165.12 61.783 157 59 1 1 157 1 156 1.78e-67 205
MsaG042334 AT5G62165.11 61.783 157 59 1 1 157 1 156 1.78e-67 205
MsaG042334 AT4G11880.2 64.557 158 53 2 1 157 1 156 1.11e-65 201
MsaG042334 AT4G11880.3 64.557 158 53 2 1 157 1 156 1.11e-65 201
MsaG042334 AT4G11880.4 54.260 223 96 3 1 222 1 218 1.54e-65 202
MsaG042334 AT4G11880.1 54.260 223 96 3 1 222 1 218 1.54e-65 202
MsaG042334 AT5G62165.10 52.558 215 77 6 1 213 1 192 2.74e-65 201
MsaG042334 AT5G62165.4 52.558 215 77 6 1 213 1 192 2.74e-65 201
MsaG042334 AT5G62165.6 60.265 151 59 1 1 151 1 150 3.79e-63 194
MsaG042334 AT5G62165.9 60.265 151 59 1 1 151 1 150 3.79e-63 194
MsaG042334 AT5G62165.7 60.265 151 59 1 1 151 1 150 3.79e-63 194
MsaG042334 AT5G62165.8 60.265 151 59 1 1 151 1 150 3.79e-63 194
MsaG042334 AT5G62165.13 60.265 151 59 1 1 151 1 150 3.79e-63 194
MsaG042334 AT5G51870.1 49.772 219 94 5 1 216 1 206 2.63e-60 188
MsaG042334 AT5G51870.4 49.554 224 99 6 1 216 1 218 4.06e-58 183
MsaG042334 AT5G51870.3 49.554 224 99 6 1 216 11 228 4.58e-58 183
MsaG042334 AT5G51860.1 46.296 216 110 1 1 216 1 210 6.65e-58 182
MsaG042334 AT5G51860.2 46.330 218 98 2 1 216 1 201 1.48e-57 181
MsaG042334 AT5G51870.2 56.209 153 61 3 1 150 1 150 5.71e-50 161
MsaG042334 AT4G09960.1 48.538 171 87 1 1 171 1 170 8.10e-50 162
MsaG042334 AT4G09960.6 48.538 171 87 1 1 171 2 171 9.59e-50 162
MsaG042334 AT4G09960.5 48.538 171 87 1 1 171 11 180 1.24e-49 162
MsaG042334 AT5G51870.5 56.209 153 61 3 1 150 24 173 2.18e-49 160
MsaG042334 AT4G09960.3 48.538 171 87 1 1 171 27 196 4.03e-49 161
MsaG042334 AT3G58780.5 47.674 172 87 2 1 171 22 191 1.52e-48 160
MsaG042334 AT3G58780.1 47.674 172 87 2 1 171 16 185 1.68e-48 159
MsaG042334 AT2G42830.1 48.824 170 84 2 3 171 18 185 1.83e-48 159
MsaG042334 AT2G42830.2 49.390 164 80 2 3 165 18 179 3.78e-48 159
MsaG042334 AT4G09960.2 53.846 143 65 1 1 143 1 142 5.67e-48 157
MsaG042334 AT4G18960.1 50.307 163 80 1 3 165 19 180 1.80e-47 157
MsaG042334 AT2G45650.1 49.419 172 85 1 1 172 1 170 3.40e-47 156
MsaG042334 AT4G09960.4 52.381 147 69 1 1 147 96 241 8.82e-47 157
MsaG042334 AT3G58780.4 53.472 144 64 2 3 145 18 159 6.74e-46 154
MsaG042334 AT3G61120.1 47.619 168 85 1 1 168 1 165 1.70e-45 152
MsaG042334 AT3G57230.1 45.977 174 86 2 1 171 1 169 5.38e-45 150
MsaG042334 AT3G57230.4 45.977 174 86 2 1 171 1 169 5.38e-45 150
MsaG042334 AT1G69120.2 48.256 172 87 2 1 171 1 171 9.48e-45 149
MsaG042334 AT1G69120.1 48.256 172 87 2 1 171 1 171 3.52e-44 149
MsaG042334 AT2G03710.3 43.353 173 94 2 1 171 1 171 7.11e-44 145
MsaG042334 AT2G03710.1 43.353 173 94 2 1 171 1 171 1.87e-43 147
MsaG042334 AT2G03710.2 43.353 173 94 2 1 171 1 171 2.21e-43 147
MsaG042334 AT3G58780.2 45.349 172 84 3 1 171 16 178 2.43e-43 146
MsaG042334 AT3G58780.3 42.051 195 85 3 3 171 18 210 6.96e-43 146
MsaG042334 AT1G24260.1 45.556 180 88 4 1 172 1 178 1.31e-42 144
MsaG042334 AT5G60910.1 46.512 172 90 2 1 171 1 171 1.45e-42 144
MsaG042334 AT3G02310.1 40.455 220 112 6 1 207 1 214 2.45e-42 144
MsaG042334 AT1G24260.2 45.304 181 88 4 1 172 1 179 2.74e-42 144
MsaG042334 AT1G26310.1 45.665 173 92 2 1 171 1 173 2.42e-41 141
MsaG042334 AT1G24260.3 47.531 162 78 3 1 157 1 160 4.46e-41 140
MsaG042334 AT3G57230.2 48.299 147 68 2 1 144 1 142 7.99e-41 137
MsaG042334 AT3G02310.2 45.455 176 86 4 1 171 1 171 1.29e-40 138
MsaG042334 AT4G37940.1 43.275 171 95 2 1 171 1 169 1.39e-40 139
MsaG042334 AT5G15800.1 44.886 176 87 4 1 171 1 171 2.35e-40 139
MsaG042334 AT5G15800.2 44.886 176 87 4 1 171 1 171 4.78e-40 138
MsaG042334 AT2G22630.1 44.318 176 86 2 1 171 1 169 2.17e-39 135
MsaG042334 AT2G22630.2 44.318 176 86 2 1 171 1 169 2.17e-39 135
MsaG042334 AT4G24540.1 37.054 224 123 5 1 213 1 217 2.04e-38 133
MsaG042334 AT4G37940.4 42.105 171 97 2 1 171 1 169 6.96e-38 131
MsaG042334 AT5G62165.14 67.442 86 28 0 1 86 1 86 1.28e-37 127
MsaG042334 AT5G13790.2 43.195 169 89 2 1 167 1 164 5.21e-37 130
MsaG042334 AT3G30260.1 47.059 153 77 3 1 151 1 151 8.13e-37 129
MsaG042334 AT4G37940.3 44.898 147 79 2 1 147 1 145 1.11e-36 127
MsaG042334 AT2G22540.3 44.118 170 90 3 1 168 1 167 1.70e-35 126
MsaG042334 AT2G22540.1 44.118 170 90 3 1 168 1 167 1.70e-35 126
MsaG042334 AT5G23260.2 43.114 167 89 3 1 165 1 163 1.75e-35 126
MsaG042334 AT5G23260.4 43.114 167 89 3 1 165 17 179 2.86e-35 126
MsaG042334 AT5G13790.1 42.604 169 87 2 1 167 1 161 3.14e-35 126
MsaG042334 AT2G14210.1 42.529 174 87 3 1 168 1 167 1.55e-34 123
MsaG042334 AT2G14210.2 42.529 174 87 3 1 168 1 167 1.97e-34 123
MsaG042334 AT5G23260.3 41.436 181 96 4 1 175 1 177 1.53e-33 120
MsaG042334 AT5G23260.1 46.622 148 73 3 1 146 17 160 5.49e-33 120
MsaG042334 AT5G10140.4 41.250 160 80 3 1 157 1 149 1.60e-31 114
MsaG042334 AT3G57390.3 36.224 196 98 3 1 178 1 187 1.25e-30 113
MsaG042334 AT3G57390.1 36.224 196 98 3 1 178 1 187 2.88e-30 112
MsaG042334 AT3G54340.1 39.264 163 89 3 1 160 1 156 5.07e-30 111
MsaG042334 AT2G22540.2 41.176 170 90 4 1 168 1 162 9.25e-30 111
MsaG042334 AT5G10140.1 38.249 217 106 6 1 213 1 193 3.38e-29 108
MsaG042334 AT5G10140.2 41.333 150 74 3 1 147 1 139 4.82e-29 107
MsaG042334 AT5G10140.3 41.333 150 74 3 1 147 1 139 1.03e-28 107
MsaG042334 AT1G71692.1 39.665 179 99 3 1 171 1 178 1.57e-28 107
MsaG042334 AT5G65060.1 37.989 179 91 4 1 173 1 165 4.15e-28 105
MsaG042334 AT5G65060.3 38.596 171 85 4 1 165 1 157 1.29e-27 104
MsaG042334 AT5G65070.1 38.095 189 100 4 1 183 1 178 5.89e-27 102
MsaG042334 AT5G20240.2 38.732 142 79 3 1 140 1 136 1.17e-26 100
MsaG042334 AT5G65070.2 35.885 209 108 4 1 183 1 209 1.60e-26 102
MsaG042334 AT5G20240.1 36.913 149 86 3 1 147 1 143 3.36e-26 101
MsaG042334 AT5G65050.3 36.782 174 100 3 1 173 1 165 4.77e-26 100
MsaG042334 AT5G65050.2 36.111 180 105 3 1 179 1 171 1.51e-25 98.6
MsaG042334 AT5G65060.2 36.872 179 82 5 1 173 1 154 2.42e-25 98.2
MsaG042334 AT5G65070.5 36.667 180 91 3 1 157 1 180 1.36e-24 97.1
MsaG042334 AT5G65050.1 37.821 156 87 3 1 155 1 147 1.41e-24 96.3
MsaG042334 AT1G77080.5 41.341 179 89 4 1 173 1 169 1.92e-24 95.5
MsaG042334 AT1G77080.4 40.571 175 92 3 1 173 1 165 2.71e-24 95.9
MsaG042334 AT1G31140.1 35.000 180 96 5 1 166 1 173 5.90e-24 95.5
MsaG042334 AT1G77080.11 41.317 167 86 3 1 165 1 157 1.02e-23 94.0
MsaG042334 AT1G31140.2 35.429 175 104 3 1 166 1 175 1.29e-23 94.4
MsaG042334 AT5G65070.3 34.762 210 110 5 1 183 1 210 1.75e-23 94.7
MsaG042334 AT5G65050.5 35.632 174 91 4 1 173 1 154 2.68e-23 92.8
MsaG042334 AT5G65070.4 39.333 150 77 3 1 147 1 139 3.61e-23 91.7
MsaG042334 AT1G77080.2 39.306 173 93 2 1 173 1 161 5.18e-23 92.4
MsaG042334 AT5G65080.3 37.342 158 89 3 1 157 8 156 5.23e-23 92.4
MsaG042334 AT5G65080.2 36.957 184 107 3 1 184 8 182 1.23e-22 91.7
MsaG042334 AT1G77080.8 37.500 192 101 4 1 173 1 192 9.53e-22 89.7
MsaG042334 AT1G77080.12 39.623 159 84 2 1 159 1 147 7.04e-21 85.5
MsaG042334 AT1G77980.1 58.571 70 28 1 1 69 1 70 2.41e-20 88.2
MsaG042334 AT1G22130.1 58.571 70 28 1 1 69 1 70 5.41e-20 87.0
MsaG042334 AT5G62165.15 42.373 118 58 4 98 213 44 153 3.49e-19 81.3
MsaG042334 AT5G62165.5 42.373 118 58 4 98 213 44 153 3.49e-19 81.3
MsaG042334 AT5G60440.1 32.544 169 82 5 3 155 8 160 1.31e-18 82.8
MsaG042334 AT1G77950.3 52.857 70 32 1 1 69 1 70 7.66e-18 80.1
MsaG042334 AT1G77950.2 52.857 70 32 1 1 69 1 70 7.66e-18 80.1
MsaG042334 AT1G77950.1 52.857 70 32 1 1 69 1 70 7.66e-18 80.1
MsaG042334 AT1G77950.4 52.857 70 32 1 1 69 1 70 7.66e-18 80.1
MsaG042334 AT4G37435.1 54.545 66 30 0 1 66 1 66 1.79e-17 77.4
MsaG042334 AT4G36590.1 53.731 67 31 0 3 69 8 74 7.47e-17 77.0
MsaG042334 AT2G34440.1 44.928 69 38 0 1 69 1 69 4.31e-16 73.6
MsaG042334 AT1G18750.1 33.529 170 84 5 1 143 1 168 7.74e-16 75.9
MsaG042334 AT3G66656.1 45.070 71 39 0 1 71 1 71 8.98e-16 72.8
MsaG042334 AT1G18750.4 33.529 170 84 5 1 143 1 168 9.30e-16 75.5
MsaG042334 AT1G18750.3 45.455 88 46 1 1 86 1 88 1.50e-15 75.1
MsaG042334 AT1G01530.1 45.455 77 41 1 3 78 8 84 3.77e-15 72.4
MsaG042334 AT2G24840.1 44.444 90 42 2 3 92 64 145 5.83e-15 72.4
MsaG042334 AT2G03060.3 38.889 108 61 2 1 106 1 105 2.46e-14 71.6
MsaG042334 AT2G03060.7 38.889 108 61 2 1 106 1 105 2.46e-14 71.6
MsaG042334 AT2G03060.1 38.889 108 61 2 1 106 1 105 2.46e-14 71.6
MsaG042334 AT2G03060.2 38.889 108 61 2 1 106 1 105 2.50e-14 71.6
MsaG042334 AT1G65360.1 37.805 82 51 0 3 84 8 89 3.51e-14 69.3
MsaG042334 AT1G47760.1 37.500 104 56 2 1 101 1 98 9.12e-14 67.4
MsaG042334 AT1G69540.1 44.286 70 38 1 1 69 1 70 3.87e-13 67.8
MsaG042334 AT1G69540.2 44.286 70 38 1 1 69 1 70 5.08e-13 67.8
MsaG042334 AT3G04100.1 41.429 70 41 0 5 74 17 86 5.33e-13 65.9
MsaG042334 AT1G72350.1 50.746 67 31 1 3 69 44 108 1.14e-12 65.5
MsaG042334 AT1G28460.1 47.692 65 34 0 5 69 11 75 4.01e-12 63.2
MsaG042334 AT1G69120.3 36.792 106 66 1 66 171 5 109 4.54e-12 63.2
MsaG042334 AT1G29962.1 46.154 65 35 0 5 69 11 75 1.24e-11 61.6
MsaG042334 AT4G18960.4 31.933 119 79 2 48 165 49 166 4.39e-11 60.1
MsaG042334 AT4G18960.3 31.933 119 79 2 48 165 49 166 9.16e-11 60.1
MsaG042334 AT4G18960.2 31.933 119 79 2 48 165 49 166 9.16e-11 60.1
MsaG042334 AT5G62165.16 37.288 118 50 5 98 213 44 139 9.58e-11 58.5

Find 33 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTATCGTTCAATTGTTTC+TGG 0.103820 8:-20331402 None:intergenic
ATGCGCCTTGATCTTGTTTC+TGG 0.179599 8:-20332929 None:intergenic
CATACCCTCAGGAAACTCTT+AGG 0.320734 8:+20331887 MsaT042334.1:intron
AAACAAAATTCGAGTCAAAA+AGG 0.343659 8:+20331976 MsaT042334.1:CDS
ACATTCTCAAAGAGGAGAAA+TGG 0.421788 8:+20323706 MsaT042334.1:CDS
GGACTACTTTGATCTGCATA+AGG 0.434122 8:-20332869 None:intergenic
TGTTGGAGTATTATTAATCC+TGG 0.457241 8:-20331433 None:intergenic
TCCTCAACTAGCTACACCTT+TGG 0.465515 8:-20332956 None:intergenic
CCCTAGCAGCTGAAAATGTC+AGG 0.468067 8:+20332457 MsaT042334.1:CDS
TCAACTGATTCAGATGTTGT+TGG 0.474858 8:-20331450 None:intergenic
TCAGTCTCCACATCTGAACT+TGG 0.501611 8:-20332890 None:intergenic
AATTGATCAGCTAAAAGAAA+AGG 0.505653 8:+20332094 MsaT042334.1:CDS
GTGGAGACTGAATTGTTCAT+TGG 0.509005 8:+20332902 MsaT042334.1:CDS
TTATATATGACAGCAATTGA+AGG 0.520360 8:+20331705 MsaT042334.1:intron
TTTATGAATTTGCTAGCTCT+AGG 0.521973 8:+20323809 MsaT042334.1:CDS
CTCAGGAAACTCTTAGGAGA+AGG 0.534303 8:+20331893 MsaT042334.1:intron
ACAAAAGATAGAACAACAGT+TGG 0.536965 8:+20331943 MsaT042334.1:CDS
AACGATACCGCAGTCATACC+AGG 0.541524 8:+20331415 MsaT042334.1:CDS
AATTCATAAAGCCTCCCTCT+TGG 0.547865 8:-20323796 None:intergenic
TGAATCAGTTGAAAATACTC+AGG 0.553467 8:+20331461 MsaT042334.1:CDS
GTCTTCCAGAAACAAGATCA+AGG 0.566677 8:+20332924 MsaT042334.1:CDS
ATCAGTGTTGTGTGATGCTG+AGG 0.567431 8:+20323753 MsaT042334.1:CDS
AAATGTCAGGCTCTCTGAGA+AGG 0.575442 8:+20332470 MsaT042334.1:CDS
ATCAAGGCGCATTTCACCAA+AGG 0.578219 8:+20332940 MsaT042334.1:CDS
ACCTTCTTGAGACTTCAAAA+CGG 0.589369 8:+20331758 MsaT042334.1:CDS
GGCAAGTAACATTCTCAAAG+AGG 0.594159 8:+20323698 MsaT042334.1:CDS
AAGTAGTCCAAGTTCAGATG+TGG 0.602735 8:+20332883 MsaT042334.1:CDS
GTATGGTAACTATTCGTCAC+CGG 0.614923 8:+20332805 MsaT042334.1:intron
ACACAACACTGATAACTCAA+AGG 0.620897 8:-20323743 None:intergenic
AGGAAGAAGCAGAAAACATG+AGG 0.632348 8:+20331725 MsaT042334.1:CDS
GTATAGAGAACGCAACAAGT+AGG 0.642404 8:+20323677 MsaT042334.1:CDS
TCAGATAGAAAATATAGCTG+AGG 0.652418 8:+20332841 MsaT042334.1:CDS
TATTAATCCTGGTATGACTG+CGG 0.689206 8:-20331422 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 20323649 20332967 20323649 ID=MsaG042334
Chr8 mRNA 20323649 20332967 20323649 ID=MsaT042334.1;Parent=MsaG042334
Chr8 exon 20323649 20323830 20323649 ID=MsaT042334.1.exon1;Parent=MsaT042334.1
Chr8 CDS 20323649 20323830 20323649 ID=cds.MsaT042334.1;Parent=MsaT042334.1
Chr8 exon 20331398 20331482 20331398 ID=MsaT042334.1.exon2;Parent=MsaT042334.1
Chr8 CDS 20331398 20331482 20331398 ID=cds.MsaT042334.1;Parent=MsaT042334.1
Chr8 exon 20331718 20331779 20331718 ID=MsaT042334.1.exon3;Parent=MsaT042334.1
Chr8 CDS 20331718 20331779 20331718 ID=cds.MsaT042334.1;Parent=MsaT042334.1
Chr8 exon 20331898 20331997 20331898 ID=MsaT042334.1.exon4;Parent=MsaT042334.1
Chr8 CDS 20331898 20331997 20331898 ID=cds.MsaT042334.1;Parent=MsaT042334.1
Chr8 exon 20332074 20332115 20332074 ID=MsaT042334.1.exon5;Parent=MsaT042334.1
Chr8 CDS 20332074 20332115 20332074 ID=cds.MsaT042334.1;Parent=MsaT042334.1
Chr8 exon 20332450 20332491 20332450 ID=MsaT042334.1.exon6;Parent=MsaT042334.1
Chr8 CDS 20332450 20332491 20332450 ID=cds.MsaT042334.1;Parent=MsaT042334.1
Chr8 exon 20332806 20332967 20332806 ID=MsaT042334.1.exon7;Parent=MsaT042334.1
Chr8 CDS 20332806 20332967 20332806 ID=cds.MsaT042334.1;Parent=MsaT042334.1
Gene Sequence

>MsaT042334.1

ATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTCTCAAAGAGGAGAAATGGTTTGTTGAAGAAAGCCTTTGAGTTATCAGTGTTGTGTGATGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGGCTTTATGAATTTGCTAGCTCTAGCATTCCAGAAACAATTGAACGATACCGCAGTCATACCAGGATTAATAATACTCCAACAACATCTGAATCAGTTGAAAATACTCAGCAATTGAAGGAAGAAGCAGAAAACATGAGGAAGAAGATTGACCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAAGGTTTAGCGTCTTGTTCCATTGATGAACTACAAAAGATAGAACAACAGTTGGAGAAAAGCATAAACAAAATTCGAGTCAAAAAGACTCAGGTTTTCAGGGAAAAAATTGATCAGCTAAAAGAAAAGGGAAAAGCCCTAGCAGCTGAAAATGTCAGGCTCTCTGAGAAGTATGGTAACTATTCGTCACCGGCAGAAAAAAAGGATCAGATAGAAAATATAGCTGAGGCTGAACCTTATGCAGATCAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGTCTTCCAGAAACAAGATCAAGGCGCATTTCACCAAAGGTGTAG
Protein sequence

>MsaT042334.1

MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSIPETIERYRSHTRINNTPTTSESVENTQQLKEEAENMRKKIDLLETSKRKLLGEGLASCSIDELQKIEQQLEKSINKIRVKKTQVFREKIDQLKEKGKALAAENVRLSEKYGNYSSPAEKKDQIENIAEAEPYADQSSPSSDVETELFIGLPETRSRRISPKV*