Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042385 | XP_013445014.1 | 84.211 | 228 | 5 | 3 | 76 | 273 | 6 | 232 | 6.71e-127 | 370 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042385 | sp|O81323|LBD30_ARATH | 51.053 | 190 | 55 | 3 | 97 | 252 | 20 | 205 | 8.32e-49 | 164 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042385 | tr|A0A072TNF8|A0A072TNF8_MEDTR | 84.211 | 228 | 5 | 3 | 76 | 273 | 6 | 232 | 3.20e-127 | 370 |
Gene ID | Type | Classification |
---|---|---|
MsaG042385 | TF | LOB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042385 | MtrunA17_Chr8g0351701 | 84.211 | 228 | 5 | 3 | 76 | 273 | 6 | 232 | 6.17e-131 | 370 |
MsaG042385 | MtrunA17_Chr7g0245871 | 45.128 | 195 | 72 | 3 | 94 | 253 | 27 | 221 | 2.24e-44 | 150 |
MsaG042385 | MtrunA17_Chr8g0351721 | 41.038 | 212 | 75 | 6 | 82 | 254 | 4 | 204 | 3.29e-38 | 133 |
MsaG042385 | MtrunA17_Chr7g0245861 | 71.053 | 76 | 19 | 3 | 85 | 158 | 4 | 78 | 2.86e-29 | 108 |
MsaG042385 | MtrunA17_Chr7g0260971 | 65.789 | 76 | 26 | 0 | 83 | 158 | 3 | 78 | 5.83e-29 | 109 |
MsaG042385 | MtrunA17_Chr7g0261031 | 67.143 | 70 | 23 | 0 | 89 | 158 | 3 | 72 | 1.50e-27 | 106 |
MsaG042385 | MtrunA17_Chr1g0184271 | 69.231 | 65 | 20 | 0 | 94 | 158 | 12 | 76 | 1.66e-27 | 106 |
MsaG042385 | MtrunA17_Chr8g0351751 | 73.134 | 67 | 17 | 1 | 12 | 77 | 1 | 67 | 5.01e-27 | 105 |
MsaG042385 | MtrunA17_Chr1g0184281 | 67.692 | 65 | 21 | 0 | 94 | 158 | 15 | 79 | 3.73e-25 | 99.4 |
MsaG042385 | MtrunA17_Chr6g0460951 | 67.692 | 65 | 21 | 0 | 94 | 158 | 40 | 104 | 6.51e-25 | 99.4 |
MsaG042385 | MtrunA17_Chr5g0435641 | 58.571 | 70 | 29 | 0 | 89 | 158 | 2 | 71 | 4.20e-24 | 96.3 |
MsaG042385 | MtrunA17_Chr5g0437571 | 36.872 | 179 | 75 | 7 | 86 | 249 | 2 | 157 | 3.98e-23 | 92.8 |
MsaG042385 | MtrunA17_Chr4g0043421 | 56.579 | 76 | 32 | 1 | 83 | 158 | 4 | 78 | 1.69e-22 | 91.3 |
MsaG042385 | MtrunA17_Chr4g0058651 | 65.152 | 66 | 22 | 1 | 93 | 158 | 10 | 74 | 8.25e-22 | 90.1 |
MsaG042385 | MtrunA17_Chr7g0227511 | 67.692 | 65 | 20 | 1 | 94 | 158 | 11 | 74 | 9.52e-22 | 89.4 |
MsaG042385 | MtrunA17_Chr2g0311601 | 54.054 | 74 | 33 | 1 | 85 | 158 | 4 | 76 | 4.48e-21 | 87.0 |
MsaG042385 | MtrunA17_Chr3g0117121 | 64.615 | 65 | 22 | 1 | 94 | 158 | 10 | 73 | 6.49e-21 | 87.8 |
MsaG042385 | MtrunA17_Chr3g0114061 | 46.535 | 101 | 36 | 3 | 86 | 171 | 2 | 99 | 1.16e-20 | 86.3 |
MsaG042385 | MtrunA17_Chr3g0106101 | 44.118 | 102 | 37 | 3 | 85 | 171 | 2 | 98 | 8.59e-20 | 84.3 |
MsaG042385 | MtrunA17_Chr5g0437401 | 62.500 | 64 | 23 | 1 | 95 | 158 | 12 | 74 | 9.23e-20 | 84.3 |
MsaG042385 | MtrunA17_Chr4g0014321 | 67.797 | 59 | 18 | 1 | 16 | 73 | 5 | 63 | 4.18e-19 | 83.6 |
MsaG042385 | MtrunA17_Chr3g0107381 | 57.143 | 63 | 26 | 1 | 12 | 73 | 1 | 63 | 7.47e-19 | 82.8 |
MsaG042385 | MtrunA17_Chr6g0449641 | 63.077 | 65 | 23 | 1 | 94 | 158 | 9 | 72 | 1.01e-18 | 80.5 |
MsaG042385 | MtrunA17_Chr6g0460941 | 55.224 | 67 | 28 | 1 | 94 | 158 | 7 | 73 | 1.13e-18 | 79.0 |
MsaG042385 | MtrunA17_Chr3g0107351 | 63.793 | 58 | 20 | 1 | 15 | 71 | 3 | 60 | 1.15e-18 | 80.9 |
MsaG042385 | MtrunA17_Chr8g0353981 | 61.538 | 65 | 24 | 1 | 94 | 158 | 7 | 70 | 1.62e-18 | 82.0 |
MsaG042385 | MtrunA17_Chr3g0107341 | 65.517 | 58 | 19 | 1 | 15 | 71 | 3 | 60 | 4.75e-18 | 79.3 |
MsaG042385 | MtrunA17_Chr6g0449651 | 60.606 | 66 | 25 | 1 | 93 | 158 | 66 | 130 | 7.01e-18 | 79.7 |
MsaG042385 | MtrunA17_Chr3g0113891 | 59.375 | 64 | 25 | 1 | 95 | 158 | 15 | 77 | 1.09e-17 | 79.0 |
MsaG042385 | MtrunA17_Chr4g0013041 | 67.797 | 59 | 16 | 2 | 16 | 73 | 5 | 61 | 1.15e-17 | 79.3 |
MsaG042385 | MtrunA17_Chr5g0438091 | 54.667 | 75 | 33 | 1 | 84 | 158 | 29 | 102 | 1.48e-17 | 78.6 |
MsaG042385 | MtrunA17_Chr3g0097221 | 58.571 | 70 | 28 | 1 | 89 | 158 | 2 | 70 | 2.50e-17 | 80.1 |
MsaG042385 | MtrunA17_Chr3g0107361 | 62.069 | 58 | 21 | 1 | 15 | 71 | 3 | 60 | 3.22e-17 | 77.0 |
MsaG042385 | MtrunA17_Chr5g0402611 | 58.333 | 72 | 25 | 2 | 89 | 158 | 3 | 71 | 4.84e-17 | 79.3 |
MsaG042385 | MtrunA17_Chr3g0107331 | 58.621 | 58 | 23 | 1 | 16 | 72 | 4 | 61 | 1.08e-16 | 75.5 |
MsaG042385 | MtrunA17_Chr5g0432451 | 54.795 | 73 | 32 | 1 | 86 | 158 | 35 | 106 | 1.76e-16 | 76.6 |
MsaG042385 | MtrunA17_Chr2g0296831 | 66.667 | 63 | 20 | 1 | 12 | 73 | 1 | 63 | 2.00e-16 | 73.6 |
MsaG042385 | MtrunA17_Chr3g0115431 | 42.241 | 116 | 37 | 2 | 93 | 179 | 8 | 122 | 2.29e-16 | 75.9 |
MsaG042385 | MtrunA17_Chr1g0197461 | 55.738 | 61 | 26 | 1 | 16 | 75 | 4 | 64 | 9.85e-16 | 72.8 |
MsaG042385 | MtrunA17_Chr3g0110131 | 65.079 | 63 | 21 | 1 | 12 | 73 | 1 | 63 | 2.12e-15 | 73.9 |
MsaG042385 | MtrunA17_Chr5g0420351 | 50.769 | 65 | 31 | 1 | 12 | 75 | 1 | 65 | 2.37e-15 | 71.6 |
MsaG042385 | MtrunA17_Chr4g0014031 | 71.429 | 63 | 17 | 1 | 16 | 77 | 5 | 67 | 2.76e-15 | 73.2 |
MsaG042385 | MtrunA17_Chr1g0188681 | 50.794 | 63 | 30 | 1 | 12 | 73 | 1 | 63 | 3.29e-15 | 71.2 |
MsaG042385 | MtrunA17_Chr2g0283941 | 60.000 | 55 | 21 | 1 | 16 | 69 | 5 | 59 | 4.67e-15 | 72.8 |
MsaG042385 | MtrunA17_Chr3g0129071 | 38.793 | 116 | 41 | 2 | 87 | 173 | 40 | 154 | 4.68e-15 | 72.8 |
MsaG042385 | MtrunA17_Chr4g0014121 | 71.831 | 71 | 15 | 2 | 8 | 73 | 21 | 91 | 6.78e-15 | 71.2 |
MsaG042385 | MtrunA17_Chr1g0197261 | 47.761 | 67 | 34 | 1 | 12 | 77 | 1 | 67 | 1.63e-13 | 66.6 |
MsaG042385 | MtrunA17_Chr4g0030001 | 49.275 | 69 | 33 | 2 | 93 | 160 | 23 | 90 | 1.99e-13 | 67.4 |
MsaG042385 | MtrunA17_Chr1g0197321 | 49.206 | 63 | 31 | 1 | 12 | 73 | 1 | 63 | 3.30e-13 | 65.9 |
MsaG042385 | MtrunA17_Chr4g0040831 | 46.377 | 69 | 36 | 1 | 87 | 155 | 8 | 75 | 6.64e-13 | 66.2 |
MsaG042385 | MtrunA17_Chr1g0200201 | 48.438 | 64 | 32 | 1 | 95 | 158 | 73 | 135 | 6.76e-13 | 66.6 |
MsaG042385 | MtrunA17_Chr5g0432691 | 50.847 | 59 | 28 | 1 | 16 | 73 | 5 | 63 | 9.10e-13 | 64.7 |
MsaG042385 | MtrunA17_Chr5g0444351 | 45.455 | 66 | 35 | 1 | 93 | 158 | 4 | 68 | 3.40e-12 | 62.8 |
MsaG042385 | MtrunA17_Chr4g0014131 | 69.841 | 63 | 18 | 1 | 12 | 73 | 1 | 63 | 3.53e-12 | 64.7 |
MsaG042385 | MtrunA17_Chr7g0225111 | 45.312 | 64 | 34 | 1 | 95 | 158 | 6 | 68 | 4.34e-12 | 61.6 |
MsaG042385 | MtrunA17_Chr2g0326041 | 52.941 | 51 | 23 | 1 | 93 | 143 | 32 | 81 | 4.56e-12 | 60.8 |
MsaG042385 | MtrunA17_Chr3g0107461 | 44.444 | 63 | 34 | 1 | 16 | 77 | 5 | 67 | 7.74e-12 | 62.4 |
MsaG042385 | MtrunA17_Chr4g0059901 | 41.667 | 72 | 41 | 1 | 90 | 161 | 6 | 76 | 1.12e-11 | 63.5 |
MsaG042385 | MtrunA17_Chr6g0452671 | 43.750 | 64 | 35 | 1 | 95 | 158 | 12 | 74 | 4.80e-11 | 60.8 |
MsaG042385 | MtrunA17_Chr4g0008701 | 52.632 | 57 | 26 | 1 | 16 | 71 | 8 | 64 | 6.35e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042385 | AT4G00220.1 | 51.053 | 190 | 55 | 3 | 97 | 252 | 20 | 205 | 8.46e-50 | 164 |
MsaG042385 | AT2G45420.1 | 47.032 | 219 | 67 | 6 | 97 | 267 | 40 | 257 | 8.30e-45 | 152 |
MsaG042385 | AT4G00210.1 | 40.097 | 207 | 85 | 5 | 86 | 254 | 3 | 208 | 1.20e-35 | 127 |
MsaG042385 | AT2G42430.1 | 68.421 | 76 | 24 | 0 | 83 | 158 | 4 | 79 | 1.21e-30 | 115 |
MsaG042385 | AT3G03760.1 | 70.423 | 71 | 17 | 1 | 94 | 160 | 51 | 121 | 1.09e-28 | 110 |
MsaG042385 | AT2G45410.1 | 48.276 | 116 | 26 | 2 | 97 | 178 | 19 | 134 | 2.20e-27 | 105 |
MsaG042385 | AT3G58190.1 | 67.692 | 65 | 21 | 0 | 94 | 158 | 11 | 75 | 2.45e-26 | 103 |
MsaG042385 | AT2G42440.1 | 61.429 | 70 | 27 | 0 | 89 | 158 | 2 | 71 | 2.95e-26 | 103 |
MsaG042385 | AT2G31310.1 | 62.319 | 69 | 26 | 0 | 90 | 158 | 3 | 71 | 4.34e-25 | 99.0 |
MsaG042385 | AT5G06080.1 | 64.062 | 64 | 23 | 0 | 95 | 158 | 8 | 71 | 1.56e-22 | 92.0 |
MsaG042385 | AT5G63090.4 | 66.154 | 65 | 21 | 1 | 94 | 158 | 11 | 74 | 2.47e-21 | 89.0 |
MsaG042385 | AT5G63090.3 | 66.154 | 65 | 21 | 1 | 94 | 158 | 11 | 74 | 2.47e-21 | 89.0 |
MsaG042385 | AT5G63090.2 | 66.154 | 65 | 21 | 1 | 94 | 158 | 11 | 74 | 2.47e-21 | 89.0 |
MsaG042385 | AT5G63090.1 | 66.154 | 65 | 21 | 1 | 94 | 158 | 11 | 74 | 2.47e-21 | 89.0 |
MsaG042385 | AT2G30130.1 | 47.573 | 103 | 34 | 3 | 84 | 171 | 2 | 99 | 3.17e-20 | 86.3 |
MsaG042385 | AT1G31320.1 | 55.072 | 69 | 30 | 1 | 90 | 158 | 9 | 76 | 7.50e-20 | 84.7 |
MsaG042385 | AT3G27650.1 | 61.538 | 65 | 24 | 1 | 94 | 158 | 39 | 102 | 1.02e-19 | 84.0 |
MsaG042385 | AT1G65620.1 | 58.333 | 72 | 29 | 1 | 87 | 158 | 2 | 72 | 4.58e-18 | 80.5 |
MsaG042385 | AT1G65620.4 | 58.333 | 72 | 29 | 1 | 87 | 158 | 2 | 72 | 4.58e-18 | 80.5 |
MsaG042385 | AT1G65620.3 | 58.333 | 72 | 29 | 1 | 87 | 158 | 2 | 72 | 4.58e-18 | 80.5 |
MsaG042385 | AT1G65620.5 | 58.333 | 72 | 29 | 1 | 87 | 158 | 2 | 72 | 4.58e-18 | 80.5 |
MsaG042385 | AT1G65620.2 | 58.333 | 72 | 29 | 1 | 87 | 158 | 2 | 72 | 4.58e-18 | 80.5 |
MsaG042385 | AT3G11090.1 | 60.938 | 64 | 24 | 1 | 95 | 158 | 12 | 74 | 1.19e-17 | 78.6 |
MsaG042385 | AT5G66870.1 | 58.209 | 67 | 27 | 1 | 89 | 155 | 2 | 67 | 2.44e-17 | 80.5 |
MsaG042385 | AT2G40470.2 | 53.947 | 76 | 34 | 1 | 83 | 158 | 9 | 83 | 2.57e-16 | 75.9 |
MsaG042385 | AT2G40470.1 | 53.947 | 76 | 34 | 1 | 83 | 158 | 34 | 108 | 3.60e-16 | 75.9 |
MsaG042385 | AT1G16530.1 | 48.000 | 75 | 37 | 2 | 85 | 158 | 5 | 78 | 4.05e-15 | 71.6 |
MsaG042385 | AT2G23660.2 | 53.846 | 65 | 29 | 1 | 91 | 155 | 2 | 65 | 6.10e-15 | 73.9 |
MsaG042385 | AT2G23660.3 | 53.846 | 65 | 29 | 1 | 91 | 155 | 2 | 65 | 6.10e-15 | 73.9 |
MsaG042385 | AT2G23660.1 | 53.846 | 65 | 29 | 1 | 91 | 155 | 2 | 65 | 6.10e-15 | 73.9 |
MsaG042385 | AT3G05860.2 | 50.000 | 60 | 29 | 1 | 12 | 70 | 1 | 60 | 9.66e-15 | 71.6 |
MsaG042385 | AT3G26660.1 | 50.820 | 61 | 29 | 1 | 95 | 155 | 6 | 65 | 2.13e-14 | 68.6 |
MsaG042385 | AT1G07900.1 | 39.604 | 101 | 38 | 2 | 93 | 171 | 32 | 131 | 2.20e-14 | 70.5 |
MsaG042385 | AT3G05860.3 | 50.000 | 60 | 29 | 1 | 12 | 70 | 1 | 60 | 2.46e-14 | 71.2 |
MsaG042385 | AT2G28500.1 | 39.604 | 101 | 38 | 2 | 93 | 171 | 54 | 153 | 2.47e-14 | 70.9 |
MsaG042385 | AT3G05860.1 | 50.000 | 60 | 29 | 1 | 12 | 70 | 1 | 60 | 2.66e-14 | 71.2 |
MsaG042385 | AT2G30340.1 | 53.425 | 73 | 33 | 1 | 86 | 158 | 44 | 115 | 2.90e-14 | 71.2 |
MsaG042385 | AT3G26620.1 | 50.820 | 61 | 29 | 1 | 95 | 155 | 6 | 65 | 3.13e-14 | 68.2 |
MsaG042385 | AT2G30340.2 | 53.425 | 73 | 33 | 1 | 86 | 158 | 45 | 116 | 3.36e-14 | 71.2 |
MsaG042385 | AT1G65330.1 | 52.542 | 59 | 27 | 1 | 16 | 73 | 4 | 62 | 1.17e-13 | 69.7 |
MsaG042385 | AT3G50510.1 | 31.387 | 137 | 63 | 4 | 94 | 201 | 12 | 146 | 1.30e-12 | 65.5 |
MsaG042385 | AT3G50510.2 | 31.387 | 137 | 63 | 4 | 94 | 201 | 12 | 146 | 1.30e-12 | 65.5 |
MsaG042385 | AT5G27960.1 | 44.615 | 65 | 35 | 1 | 16 | 79 | 3 | 67 | 5.81e-12 | 65.5 |
MsaG042385 | AT5G26650.1 | 44.615 | 65 | 35 | 1 | 16 | 79 | 3 | 67 | 1.22e-11 | 64.7 |
MsaG042385 | AT1G65300.1 | 50.847 | 59 | 28 | 1 | 16 | 73 | 4 | 62 | 4.20e-11 | 62.4 |
Find 81 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGAGCCCCGCCAATATT+TGG | 0.160749 | 8:-21084153 | MsaT042385.1:CDS |
GAAGTTTGTGCTATAGTTTA+TGG | 0.218490 | 8:-21090259 | MsaT042385.1:CDS |
TAGATCAAAGATTGTTCATT+TGG | 0.270427 | 8:+21084004 | None:intergenic |
CAAATATTGGCGGGGCTCAT+TGG | 0.328917 | 8:+21084154 | None:intergenic |
ACATCATCCACTAGCAATAA+TGG | 0.352137 | 8:-21084122 | MsaT042385.1:CDS |
GGTGGAGGTGTTGGTGGTTG+AGG | 0.362273 | 8:+21084305 | None:intergenic |
ATGGCTGAAGAAGGGGCTAA+TGG | 0.363007 | 8:+21084248 | None:intergenic |
GCATGACCCATGATGAAGTT+TGG | 0.364374 | 8:+21084186 | None:intergenic |
TCATTGTCAATGATACTATA+AGG | 0.367700 | 8:-21090351 | MsaT042385.1:CDS |
GAAGACAAGTCATATGTATC+TGG | 0.372604 | 8:+21084224 | None:intergenic |
CATGACCCATGATGAAGTTT+GGG | 0.376247 | 8:+21084187 | None:intergenic |
AATGAGCCCCGCCAATATTT+GGG | 0.384284 | 8:-21084152 | MsaT042385.1:CDS |
AGTGCTTGTGGTGGAGGTGT+TGG | 0.400398 | 8:+21084296 | None:intergenic |
TGAGATGTGGCCATCCCCTT+GGG | 0.400433 | 8:-21090218 | MsaT042385.1:CDS |
ATCTCATGTTGCGGTTCATA+AGG | 0.404391 | 8:+21090235 | None:intergenic |
AAATATTGGCGGGGCTCATT+GGG | 0.412129 | 8:+21084155 | None:intergenic |
TGGCTGAAGAAGGGGCTAAT+GGG | 0.433908 | 8:+21084249 | None:intergenic |
ATGTGCCACTACCCAAATAT+TGG | 0.434191 | 8:+21084141 | None:intergenic |
AAGGGTCTATTGAAGATTGA+TGG | 0.435144 | 8:-21090304 | MsaT042385.1:CDS |
TTTGAGAAGGAAGTGTATCC+CGG | 0.449160 | 8:-21088367 | MsaT042385.1:CDS |
GGAAAGCAACATACAAGAAA+AGG | 0.449202 | 8:-21090330 | MsaT042385.1:CDS |
AGTGGTTGCAGTGGCGGTGG+TGG | 0.450413 | 8:-21088429 | MsaT042385.1:CDS |
CCTTACTTCGATTCGGAGCA+AGG | 0.451165 | 8:-21088330 | MsaT042385.1:CDS |
ATTGGAAGTGCTTGTGGTGG+AGG | 0.458768 | 8:+21084290 | None:intergenic |
AAAGTTGCTACAAAATGTTC+CGG | 0.465613 | 8:-21088256 | MsaT042385.1:CDS |
GATGGACTAAACACTCTTTG+TGG | 0.477252 | 8:-21090286 | MsaT042385.1:CDS |
GCTTGTGGTGGAGGTGTTGG+TGG | 0.478286 | 8:+21084299 | None:intergenic |
TTGGAAAGAGAATGAGATGA+TGG | 0.479844 | 8:+21084023 | None:intergenic |
ATGAGATGTGGCCATCCCCT+TGG | 0.486959 | 8:-21090219 | MsaT042385.1:CDS |
AACATACAAGAAAAGGAAGA+AGG | 0.492306 | 8:-21090323 | MsaT042385.1:CDS |
CCTTGCTCCGAATCGAAGTA+AGG | 0.493406 | 8:+21088330 | None:intergenic |
AACTCAGGTTGTAGCGGTAG+TGG | 0.496028 | 8:-21088447 | MsaT042385.1:intron |
CCATCCCCTTGGGGTCCAAA+AGG | 0.499637 | 8:-21090208 | MsaT042385.1:intron |
GTATCTGGCATGGCTGAAGA+AGG | 0.503262 | 8:+21084239 | None:intergenic |
GCCACTACCCAAATATTGGC+GGG | 0.507847 | 8:+21084145 | None:intergenic |
CCCCGCCAATATTTGGGTAG+TGG | 0.517665 | 8:-21084146 | MsaT042385.1:CDS |
TGGAAAGAGAATGAGATGAT+GGG | 0.519184 | 8:+21084024 | None:intergenic |
TATAGTATCATTGACAATGA+AGG | 0.523085 | 8:+21090354 | None:intergenic |
GGTAGTGGTTGCAGTGGCGG+TGG | 0.527599 | 8:-21088432 | MsaT042385.1:CDS |
AAGTACCCCAAACTTCATCA+TGG | 0.535257 | 8:-21084193 | MsaT042385.1:CDS |
ATCACCACCATTATTGCTAG+TGG | 0.552303 | 8:+21084115 | None:intergenic |
GAGGTACTTCATATGTAGCT+AGG | 0.553041 | 8:+21084324 | None:intergenic |
GCATCGAGACGCTTGTGTAC+CGG | 0.555181 | 8:+21088237 | None:intergenic |
TATCTGGCATGGCTGAAGAA+GGG | 0.557341 | 8:+21084240 | None:intergenic |
TGCCACTACCCAAATATTGG+CGG | 0.560339 | 8:+21084144 | None:intergenic |
AGAAGGGGCTAATGGGAGGT+TGG | 0.565320 | 8:+21084256 | None:intergenic |
ATCTGGCATGGCTGAAGAAG+GGG | 0.574156 | 8:+21084241 | None:intergenic |
TGGTGGTGATCTTCAAGCAT+TGG | 0.576068 | 8:-21084102 | MsaT042385.1:CDS |
GCAGAACTCTCCTACTTACA+AGG | 0.583111 | 8:-21084350 | MsaT042385.1:CDS |
AGCGGTAGTGGTTGCAGTGG+CGG | 0.583643 | 8:-21088435 | MsaT042385.1:CDS |
TTGAGAAGGAAGTGTATCCC+GGG | 0.588366 | 8:-21088366 | MsaT042385.1:CDS |
AATGAAGGCAAGTTTCACCT+TGG | 0.589784 | 8:+21090369 | None:intergenic |
AGCGGTGCTTGTGGCCCTTG+TGG | 0.589999 | 8:-21088402 | MsaT042385.1:CDS |
ACATACAAGAAAAGGAAGAA+GGG | 0.593121 | 8:-21090322 | MsaT042385.1:CDS |
TCCACCACAAGCACTTCCAA+TGG | 0.600735 | 8:-21084288 | MsaT042385.1:CDS |
AGCTAGGTGGCCTTGTAAGT+AGG | 0.602023 | 8:+21084340 | None:intergenic |
GGAAAGAGAATGAGATGATG+GGG | 0.602088 | 8:+21084025 | None:intergenic |
ACATTTCGCAGCGGTTCACA+AGG | 0.604702 | 8:-21088301 | MsaT042385.1:CDS |
GAGATGTGGCCATCCCCTTG+GGG | 0.609169 | 8:-21090217 | MsaT042385.1:CDS |
GGTGGAAACAGCGGTGCTTG+TGG | 0.613566 | 8:-21088411 | MsaT042385.1:CDS |
GAGACCATTGGAAGTGCTTG+TGG | 0.614748 | 8:+21084284 | None:intergenic |
CTGAAGAAGGGGCTAATGGG+AGG | 0.615538 | 8:+21084252 | None:intergenic |
GATGGCCACATCTCATGTTG+CGG | 0.617827 | 8:+21090226 | None:intergenic |
CCACTACCCAAATATTGGCG+GGG | 0.618911 | 8:+21084146 | None:intergenic |
AGTACCCCAAACTTCATCAT+GGG | 0.621265 | 8:-21084192 | MsaT042385.1:CDS |
GCATCAGAGCATGCAACATG+AGG | 0.623709 | 8:+21084047 | None:intergenic |
CAAGTCATATGTATCTGGCA+TGG | 0.623715 | 8:+21084229 | None:intergenic |
TTACACTCACATTGTAACAC+AGG | 0.624858 | 8:+21091411 | None:intergenic |
TGTAGCGGTAGTGGTTGCAG+TGG | 0.628263 | 8:-21088438 | MsaT042385.1:CDS |
AGGTTGGCTAGTGAGACCAT+TGG | 0.630062 | 8:+21084272 | None:intergenic |
ATGAACCGCAACATGAGATG+TGG | 0.644784 | 8:-21090231 | MsaT042385.1:CDS |
ACCATTGGAAGTGCTTGTGG+TGG | 0.654201 | 8:+21084287 | None:intergenic |
AGTATAAACTCAGGTTGTAG+CGG | 0.660402 | 8:-21088453 | MsaT042385.1:intron |
AGTTGTTCTAGTCACAACCA+AGG | 0.663180 | 8:-21090386 | MsaT042385.1:CDS |
AAAACTTGCATGCGCCACAA+GGG | 0.663949 | 8:+21088388 | None:intergenic |
AGGCGCTTCACATTTCGCAG+CGG | 0.690521 | 8:-21088310 | MsaT042385.1:CDS |
AGTGGCGGTGGTGGAAACAG+CGG | 0.697252 | 8:-21088420 | MsaT042385.1:CDS |
TCATCCACTAGCAATAATGG+TGG | 0.700074 | 8:-21084119 | MsaT042385.1:CDS |
GGTACACAAGCGTCTCGATG+CGG | 0.708372 | 8:-21088235 | MsaT042385.1:intron |
GTACTTCATATGTAGCTAGG+TGG | 0.723309 | 8:+21084327 | None:intergenic |
ATGACCCATGATGAAGTTTG+GGG | 0.727107 | 8:+21084188 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 21084019 | 21091448 | 21084019 | ID=MsaG042385 |
Chr8 | mRNA | 21084019 | 21091448 | 21084019 | ID=MsaT042385.1;Parent=MsaG042385 |
Chr8 | exon | 21084019 | 21084387 | 21084019 | ID=MsaT042385.1.exon4;Parent=MsaT042385.1 |
Chr8 | CDS | 21084019 | 21084387 | 21084019 | ID=cds.MsaT042385.1;Parent=MsaT042385.1 |
Chr8 | exon | 21088236 | 21088462 | 21088236 | ID=MsaT042385.1.exon3;Parent=MsaT042385.1 |
Chr8 | CDS | 21088236 | 21088462 | 21088236 | ID=cds.MsaT042385.1;Parent=MsaT042385.1 |
Chr8 | exon | 21090209 | 21090406 | 21090209 | ID=MsaT042385.1.exon2;Parent=MsaT042385.1 |
Chr8 | CDS | 21090209 | 21090406 | 21090209 | ID=cds.MsaT042385.1;Parent=MsaT042385.1 |
Chr8 | exon | 21091421 | 21091448 | 21091421 | ID=MsaT042385.1.exon1;Parent=MsaT042385.1 |
Chr8 | CDS | 21091421 | 21091448 | 21091421 | ID=cds.MsaT042385.1;Parent=MsaT042385.1 |
Gene Sequence |
Protein sequence |