Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042562 | XP_003627926.1 | 98.498 | 466 | 6 | 1 | 1 | 465 | 1 | 466 | 0.0 | 940 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042562 | sp|Q6IVC2|TGAL1_ORYSJ | 67.181 | 454 | 138 | 6 | 18 | 465 | 24 | 472 | 0.0 | 561 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042562 | tr|G7LGW2|G7LGW2_MEDTR | 98.498 | 466 | 6 | 1 | 1 | 465 | 1 | 466 | 0.0 | 940 |
Gene ID | Type | Classification |
---|---|---|
MsaG042562 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042562 | MtrunA17_Chr8g0353501 | 98.498 | 466 | 6 | 1 | 1 | 465 | 1 | 466 | 0.0 | 940 |
MsaG042562 | MtrunA17_Chr7g0256211 | 67.591 | 469 | 131 | 9 | 1 | 465 | 1 | 452 | 0.0 | 590 |
MsaG042562 | MtrunA17_Chr5g0422771 | 66.667 | 303 | 98 | 3 | 165 | 465 | 163 | 464 | 4.26e-142 | 415 |
MsaG042562 | MtrunA17_Chr1g0210151 | 60.519 | 347 | 115 | 6 | 134 | 465 | 1 | 340 | 4.06e-136 | 395 |
MsaG042562 | MtrunA17_Chr1g0174701 | 60.586 | 307 | 108 | 4 | 167 | 464 | 203 | 505 | 7.04e-130 | 385 |
MsaG042562 | MtrunA17_Chr7g0258321 | 53.109 | 386 | 158 | 9 | 97 | 464 | 82 | 462 | 9.85e-130 | 384 |
MsaG042562 | MtrunA17_Chr2g0321431 | 63.194 | 288 | 96 | 3 | 178 | 465 | 192 | 469 | 7.88e-125 | 372 |
MsaG042562 | MtrunA17_Chr3g0124601 | 56.575 | 327 | 124 | 4 | 149 | 465 | 43 | 361 | 1.51e-118 | 351 |
MsaG042562 | MtrunA17_Chr4g0026401 | 58.419 | 291 | 102 | 3 | 178 | 465 | 187 | 461 | 2.67e-113 | 342 |
MsaG042562 | MtrunA17_Chr3g0115371 | 50.987 | 304 | 136 | 3 | 168 | 465 | 53 | 349 | 2.55e-95 | 291 |
MsaG042562 | MtrunA17_Chr8g0382861 | 52.027 | 296 | 128 | 4 | 175 | 465 | 70 | 356 | 4.82e-95 | 291 |
MsaG042562 | MtrunA17_Chr5g0424861 | 52.778 | 288 | 124 | 4 | 180 | 462 | 67 | 347 | 2.26e-90 | 279 |
MsaG042562 | MtrunA17_Chr3g0093451 | 58.824 | 187 | 64 | 4 | 159 | 332 | 23 | 209 | 2.12e-73 | 230 |
MsaG042562 | MtrunA17_Chr5g0424851 | 49.091 | 220 | 104 | 3 | 244 | 462 | 10 | 222 | 5.41e-60 | 202 |
MsaG042562 | MtrunA17_Chr5g0424851 | 46.602 | 206 | 103 | 2 | 248 | 453 | 228 | 426 | 1.63e-55 | 191 |
MsaG042562 | MtrunA17_Chr1g0196951 | 33.333 | 207 | 108 | 5 | 257 | 458 | 59 | 240 | 2.70e-23 | 98.2 |
MsaG042562 | MtrunA17_Chr8g0384821 | 28.333 | 240 | 144 | 4 | 241 | 452 | 8 | 247 | 3.77e-18 | 84.3 |
MsaG042562 | MtrunA17_Chr7g0242651 | 24.171 | 211 | 157 | 2 | 248 | 455 | 9 | 219 | 1.60e-12 | 67.0 |
MsaG042562 | MtrunA17_Chr2g0315631 | 22.581 | 217 | 127 | 3 | 248 | 444 | 4 | 199 | 4.08e-12 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042562 | AT3G12250.6 | 80.422 | 332 | 63 | 2 | 134 | 465 | 1 | 330 | 0.0 | 526 |
MsaG042562 | AT3G12250.2 | 80.422 | 332 | 63 | 2 | 134 | 465 | 1 | 330 | 0.0 | 526 |
MsaG042562 | AT3G12250.7 | 80.422 | 332 | 63 | 2 | 134 | 465 | 1 | 330 | 0.0 | 526 |
MsaG042562 | AT3G12250.1 | 80.422 | 332 | 63 | 2 | 134 | 465 | 1 | 330 | 0.0 | 526 |
MsaG042562 | AT3G12250.4 | 75.070 | 357 | 62 | 3 | 134 | 465 | 1 | 355 | 0.0 | 514 |
MsaG042562 | AT3G12250.5 | 82.237 | 304 | 53 | 1 | 162 | 465 | 1 | 303 | 1.86e-177 | 499 |
MsaG042562 | AT5G06950.2 | 75.510 | 343 | 60 | 3 | 134 | 465 | 1 | 330 | 2.96e-177 | 499 |
MsaG042562 | AT5G06950.4 | 75.510 | 343 | 60 | 3 | 134 | 465 | 1 | 330 | 2.96e-177 | 499 |
MsaG042562 | AT5G06950.1 | 75.510 | 343 | 60 | 3 | 134 | 465 | 1 | 330 | 2.96e-177 | 499 |
MsaG042562 | AT5G06950.5 | 75.510 | 343 | 60 | 3 | 134 | 465 | 1 | 330 | 2.96e-177 | 499 |
MsaG042562 | AT5G06950.3 | 75.510 | 343 | 60 | 3 | 134 | 465 | 1 | 330 | 2.96e-177 | 499 |
MsaG042562 | AT3G12250.3 | 82.237 | 304 | 53 | 1 | 162 | 465 | 22 | 324 | 3.17e-177 | 499 |
MsaG042562 | AT5G06960.2 | 77.410 | 332 | 73 | 2 | 134 | 465 | 1 | 330 | 7.20e-173 | 488 |
MsaG042562 | AT5G06960.1 | 77.410 | 332 | 73 | 2 | 134 | 465 | 1 | 330 | 7.20e-173 | 488 |
MsaG042562 | AT5G06960.3 | 80.208 | 288 | 56 | 1 | 178 | 465 | 24 | 310 | 3.73e-162 | 460 |
MsaG042562 | AT1G68640.1 | 69.552 | 335 | 99 | 2 | 133 | 465 | 119 | 452 | 1.81e-145 | 424 |
MsaG042562 | AT1G08320.2 | 64.583 | 288 | 92 | 2 | 178 | 465 | 52 | 329 | 5.78e-131 | 383 |
MsaG042562 | AT1G08320.5 | 64.583 | 288 | 92 | 2 | 178 | 465 | 52 | 329 | 5.78e-131 | 383 |
MsaG042562 | AT1G08320.1 | 64.583 | 288 | 92 | 2 | 178 | 465 | 176 | 453 | 8.00e-130 | 385 |
MsaG042562 | AT1G08320.4 | 64.583 | 288 | 92 | 2 | 178 | 465 | 176 | 453 | 8.00e-130 | 385 |
MsaG042562 | AT1G08320.3 | 64.583 | 288 | 92 | 2 | 178 | 465 | 176 | 453 | 8.00e-130 | 385 |
MsaG042562 | AT5G06839.2 | 61.290 | 310 | 106 | 4 | 169 | 464 | 106 | 415 | 3.35e-127 | 375 |
MsaG042562 | AT5G06839.3 | 61.290 | 310 | 105 | 5 | 169 | 464 | 149 | 457 | 7.04e-127 | 376 |
MsaG042562 | AT5G06839.1 | 61.290 | 310 | 105 | 5 | 169 | 464 | 106 | 414 | 8.33e-127 | 375 |
MsaG042562 | AT1G22070.1 | 54.328 | 335 | 139 | 4 | 135 | 465 | 58 | 382 | 7.50e-115 | 343 |
MsaG042562 | AT5G10030.5 | 58.054 | 298 | 112 | 3 | 173 | 465 | 73 | 362 | 1.47e-113 | 339 |
MsaG042562 | AT5G10030.3 | 58.054 | 298 | 112 | 3 | 173 | 465 | 73 | 362 | 1.47e-113 | 339 |
MsaG042562 | AT5G10030.1 | 58.054 | 298 | 112 | 3 | 173 | 465 | 73 | 362 | 1.47e-113 | 339 |
MsaG042562 | AT5G10030.4 | 58.054 | 298 | 112 | 3 | 173 | 465 | 73 | 362 | 1.47e-113 | 339 |
MsaG042562 | AT5G10030.2 | 58.054 | 298 | 112 | 3 | 173 | 465 | 73 | 362 | 1.47e-113 | 339 |
MsaG042562 | AT1G77920.1 | 53.666 | 341 | 135 | 5 | 136 | 465 | 38 | 366 | 8.33e-112 | 335 |
MsaG042562 | AT5G65210.6 | 56.376 | 298 | 117 | 3 | 173 | 465 | 7 | 296 | 1.87e-108 | 323 |
MsaG042562 | AT5G65210.5 | 50.279 | 358 | 150 | 6 | 127 | 465 | 18 | 366 | 2.02e-108 | 326 |
MsaG042562 | AT5G65210.7 | 50.279 | 358 | 150 | 6 | 127 | 465 | 18 | 366 | 2.02e-108 | 326 |
MsaG042562 | AT5G65210.3 | 50.279 | 358 | 150 | 6 | 127 | 465 | 18 | 366 | 2.02e-108 | 326 |
MsaG042562 | AT5G65210.1 | 50.279 | 358 | 150 | 6 | 127 | 465 | 18 | 366 | 2.02e-108 | 326 |
MsaG042562 | AT5G65210.2 | 50.279 | 358 | 150 | 6 | 127 | 465 | 18 | 366 | 2.02e-108 | 326 |
MsaG042562 | AT5G65210.4 | 50.279 | 358 | 150 | 6 | 127 | 465 | 18 | 366 | 2.02e-108 | 326 |
MsaG042562 | AT3G14880.2 | 22.791 | 215 | 124 | 3 | 255 | 444 | 17 | 214 | 4.69e-12 | 66.2 |
MsaG042562 | AT1G58330.1 | 25.116 | 215 | 153 | 4 | 248 | 455 | 10 | 223 | 6.73e-12 | 65.5 |
MsaG042562 | AT3G14880.1 | 24.390 | 205 | 140 | 3 | 255 | 444 | 17 | 221 | 3.42e-11 | 63.9 |
Find 123 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTGTATGAACACTTAATA+TGG | 0.220209 | 8:-24176801 | None:intergenic |
CTGCTGAAAGGTGTTTCTTA+TGG | 0.270813 | 8:+24179393 | MsaT042562.1:CDS |
AACGACTACTTTCCAATTGT+TGG | 0.295766 | 8:-24178377 | None:intergenic |
CGGCCATGGCAAATTCTTCC+TGG | 0.301627 | 8:-24176826 | None:intergenic |
CAATGCATCTTCTGCTTGTT+GGG | 0.319617 | 8:-24179866 | None:intergenic |
GGCTCTGTTTGGTTCGTCAA+TGG | 0.323135 | 8:-24176728 | None:intergenic |
TAGTCAACCATATCGCTTAG+AGG | 0.358339 | 8:+24175879 | MsaT042562.1:CDS |
ACCTTCCTCATCTGGTTCCT+CGG | 0.368179 | 8:+24179945 | MsaT042562.1:CDS |
GCTGAAGCTCTTGCTCTAGT+TGG | 0.368756 | 8:-24178410 | None:intergenic |
TCCTTACTTTCTTTCTCAAC+CGG | 0.370751 | 8:-24177585 | None:intergenic |
ACAGCTTCTGGTAAATCAAT+TGG | 0.378865 | 8:+24179792 | MsaT042562.1:intron |
GCAACCTATGTGGCTCTGTT+TGG | 0.379874 | 8:-24176739 | None:intergenic |
CCTTCCTCATCTGGTTCCTC+GGG | 0.387610 | 8:+24179946 | MsaT042562.1:CDS |
ACTGGTGCACCTTCCTCATC+TGG | 0.390580 | 8:+24179937 | MsaT042562.1:CDS |
GCTCTGTTTGGTTCGTCAAT+GGG | 0.395776 | 8:-24176727 | None:intergenic |
TCAAGAGAACTGGTATGAAC+AGG | 0.403786 | 8:-24176566 | None:intergenic |
CAGGGCCAGGAGAAATTGTT+TGG | 0.403898 | 8:-24176547 | None:intergenic |
ATAGGCCTATGTCCAACAAT+TGG | 0.407086 | 8:+24178365 | MsaT042562.1:intron |
ACAATGCATCTTCTGCTTGT+TGG | 0.407137 | 8:-24179867 | None:intergenic |
ACACATTCACTGAGTGGAAA+TGG | 0.409133 | 8:+24178618 | MsaT042562.1:CDS |
AGCAAGAGCTTCAGCGAGCC+AGG | 0.410136 | 8:+24178418 | MsaT042562.1:CDS |
TCCACATGCCAGACAACAAA+TGG | 0.411800 | 8:-24179364 | None:intergenic |
ACAGCATCCTCTAAGCGATA+TGG | 0.415546 | 8:-24175886 | None:intergenic |
CACTACAATCATTAATCCCT+TGG | 0.416890 | 8:-24180414 | None:intergenic |
ATTGTCGTGTTGTCAATATT+CGG | 0.418451 | 8:-24180317 | None:intergenic |
CTTAATATGGTACCGCTACC+TGG | 0.419828 | 8:-24176788 | None:intergenic |
CGCTCTCAGCTCTCTCTGGT+TGG | 0.422468 | 8:+24180386 | MsaT042562.1:CDS |
AGCAGAAGATGCATTGTCTC+AGG | 0.422669 | 8:+24179873 | MsaT042562.1:CDS |
TCTCACTGAGCAGCAGTTGA+TGG | 0.427305 | 8:+24179819 | MsaT042562.1:CDS |
TCATACCAGTTCTCTTGATA+AGG | 0.433339 | 8:+24176571 | MsaT042562.1:CDS |
AATATTGACAACACGACAAT+CGG | 0.436484 | 8:+24180320 | MsaT042562.1:CDS |
GCTTCAGCGAGCCAGGCAAC+AGG | 0.437362 | 8:+24178425 | MsaT042562.1:CDS |
TGCGCGCTCTCAGCTCTCTC+TGG | 0.437796 | 8:+24180382 | MsaT042562.1:CDS |
CTCTCTGGTTGGCTCGTCCA+AGG | 0.444712 | 8:+24180397 | MsaT042562.1:CDS |
TTTAACTCACTTAAAGTAAG+TGG | 0.445667 | 8:+24176524 | MsaT042562.1:CDS |
CTGAAGCTCTTGCTCTAGTT+GGG | 0.454588 | 8:-24178409 | None:intergenic |
GAACTTCGCATGATTGTTGA+TGG | 0.456225 | 8:+24179278 | MsaT042562.1:CDS |
GCATTTGTTGTAGTGTCTGC+TGG | 0.459312 | 8:-24180293 | None:intergenic |
ACTCACCTTATCAAGAGAAC+TGG | 0.460871 | 8:-24176576 | None:intergenic |
TTTATCCTTTGATCTGTCAC+TGG | 0.461119 | 8:-24177407 | None:intergenic |
CTTGCAGAGACGCTGTCCAC+TGG | 0.462489 | 8:+24179919 | MsaT042562.1:CDS |
GGCAAATTACATGGGTCAAA+TGG | 0.469208 | 8:+24179975 | MsaT042562.1:CDS |
ATCAACAATCATGCGAAGTT+CGG | 0.473485 | 8:-24179276 | None:intergenic |
GATGAGAAGGGAGCAGAAAG+AGG | 0.473605 | 8:+24174680 | MsaT042562.1:CDS |
GGGGAATGTGGCAAATTACA+TGG | 0.473681 | 8:+24179966 | MsaT042562.1:CDS |
GAAAGGTGTTTCTTATGGCT+TGG | 0.475014 | 8:+24179398 | MsaT042562.1:CDS |
GGGTCAAATGGCTATGGCCA+TGG | 0.476020 | 8:+24179987 | MsaT042562.1:CDS |
AGTTGGTGTTGAAGATGAGA+AGG | 0.478818 | 8:+24174667 | MsaT042562.1:CDS |
GCTATGGCCATGGGTAAACT+TGG | 0.487827 | 8:+24179997 | MsaT042562.1:CDS |
GCTGAAAGGTGTTGCAGCTA+AGG | 0.488277 | 8:+24179331 | MsaT042562.1:CDS |
TGCAGAATATGCAAGGTGGC+TGG | 0.488727 | 8:+24179193 | MsaT042562.1:CDS |
AGATGCATTGTCTCAGGGTA+TGG | 0.491210 | 8:+24179879 | MsaT042562.1:CDS |
CCATGGCCGATGCCAGTCCT+AGG | 0.497921 | 8:+24176840 | MsaT042562.1:CDS |
TCGGTCATCTGAACTTCTCA+AGG | 0.499364 | 8:+24179427 | MsaT042562.1:CDS |
ATGAGAAGGGAGCAGAAAGA+GGG | 0.507949 | 8:+24174681 | MsaT042562.1:CDS |
TCTCTGGTTGGCTCGTCCAA+GGG | 0.513960 | 8:+24180398 | MsaT042562.1:CDS |
CACCCGCTGATTCTTGTCAT+CGG | 0.514566 | 8:-24176888 | None:intergenic |
TCTGTCGAAATATCAGTCCT+AGG | 0.517561 | 8:-24176857 | None:intergenic |
ATCTGGTTCCTCGGGGAATG+TGG | 0.518894 | 8:+24179954 | MsaT042562.1:CDS |
GGGAGTCTTCATATCAAGCT+CGG | 0.529762 | 8:+24178587 | MsaT042562.1:intron |
CCTAGGACTGGCATCGGCCA+TGG | 0.532193 | 8:-24176840 | None:intergenic |
CTCACTGAGCAGCAGTTGAT+GGG | 0.536958 | 8:+24179820 | MsaT042562.1:CDS |
GAACTGGTATGAACAGGGCC+AGG | 0.537901 | 8:-24176560 | None:intergenic |
AGGACTGATATTTCGACAGA+TGG | 0.538631 | 8:+24176860 | MsaT042562.1:CDS |
TCCATTTGTTGTCTGGCATG+TGG | 0.541899 | 8:+24179363 | MsaT042562.1:CDS |
CGAACCAAACAGAGCCACAT+AGG | 0.549458 | 8:+24176735 | MsaT042562.1:CDS |
ACTTTCCAATTGTTGGACAT+AGG | 0.549896 | 8:-24178370 | None:intergenic |
AAAGGATAAATCAGATCAGA+AGG | 0.550838 | 8:+24177420 | MsaT042562.1:CDS |
TGCATCTTCTGCTTGTTGGG+AGG | 0.551942 | 8:-24179863 | None:intergenic |
GGTCAAATGGCTATGGCCAT+GGG | 0.552555 | 8:+24179988 | MsaT042562.1:CDS |
ATCAGTCCTAGGACTGGCAT+CGG | 0.552732 | 8:-24176846 | None:intergenic |
TTAGTTAATTGCAACCTATG+TGG | 0.552953 | 8:-24176749 | None:intergenic |
GGAGTCTTCATATCAAGCTC+GGG | 0.556167 | 8:+24178588 | MsaT042562.1:CDS |
CGAAATATCAGTCCTAGGAC+TGG | 0.557940 | 8:-24176852 | None:intergenic |
AGGTGTTTCTTATGGCTTGG+TGG | 0.558392 | 8:+24179401 | MsaT042562.1:CDS |
AAGCTTCAATCATCAAATCC+AGG | 0.559884 | 8:+24176770 | MsaT042562.1:CDS |
CATAAGAAACACCTTTCAGC+AGG | 0.562302 | 8:-24179392 | None:intergenic |
CGAGCTTCACTTCCGATGCA+TGG | 0.564803 | 8:+24174708 | MsaT042562.1:CDS |
TTACATGGGTCAAATGGCTA+TGG | 0.565231 | 8:+24179981 | MsaT042562.1:CDS |
CAGTGGACAGCGTCTCTGCA+AGG | 0.565845 | 8:-24179918 | None:intergenic |
CACGATTCTGAGCGAGCCTG+CGG | 0.566544 | 8:-24177546 | None:intergenic |
ACTGAATCTAACCTGTTGCC+TGG | 0.566777 | 8:-24178436 | None:intergenic |
AGTGGCCAAACAATTTCTCC+TGG | 0.570700 | 8:+24176542 | MsaT042562.1:CDS |
ATGGATTTCAGCTATACAGA+TGG | 0.574550 | 8:+24175814 | MsaT042562.1:intron |
TTGGGAGGATTGTTGCAAGT+TGG | 0.576668 | 8:-24179848 | None:intergenic |
CCGCGAAAAGTAATCATGGA+TGG | 0.583482 | 8:-24180358 | None:intergenic |
ACTCGAGGGCTTCATTCGAC+AGG | 0.590463 | 8:+24180023 | MsaT042562.1:CDS |
ATCAACTGCTGCTCAGTGAG+AGG | 0.591227 | 8:-24179817 | None:intergenic |
AAAAGTAATCATGGATGGCA+AGG | 0.593869 | 8:-24180353 | None:intergenic |
AGTGGACAGCGTCTCTGCAA+GGG | 0.594409 | 8:-24179917 | None:intergenic |
GAGGATGCTGTTGCTCTGAG+TGG | 0.595978 | 8:+24175898 | MsaT042562.1:CDS |
TATTATTGTAGACTCTCCGC+AGG | 0.596692 | 8:+24177530 | MsaT042562.1:intron |
CAATCATCAAATCCAGGTAG+CGG | 0.596748 | 8:+24176776 | MsaT042562.1:CDS |
CACCGATGACAAGAATCAGC+GGG | 0.600003 | 8:+24176886 | MsaT042562.1:CDS |
GAGTGTTCCAAGTTTACCCA+TGG | 0.600742 | 8:-24180004 | None:intergenic |
AGAAGAAATATACCATGCAT+CGG | 0.603289 | 8:-24174720 | None:intergenic |
TGACTCCAGTGACAGATCAA+AGG | 0.603790 | 8:+24177402 | MsaT042562.1:CDS |
AAGTGTTCATACAGAAAACC+AGG | 0.608836 | 8:+24176808 | MsaT042562.1:CDS |
ATTCCCCGAGGAACCAGATG+AGG | 0.609365 | 8:-24179950 | None:intergenic |
GCAGAAGATGCATTGTCTCA+GGG | 0.610171 | 8:+24179874 | MsaT042562.1:CDS |
CATGATTGTTGATGGTGTAG+TGG | 0.611316 | 8:+24179286 | MsaT042562.1:CDS |
TGGATTTCAGCTATACAGAT+GGG | 0.613061 | 8:+24175815 | MsaT042562.1:intron |
GCAGCCGCGAAAAGTAATCA+TGG | 0.613549 | 8:-24180362 | None:intergenic |
AGATGAGGAAGGTGCACCAG+TGG | 0.616659 | 8:-24179935 | None:intergenic |
GTTGGTGTTGAAGATGAGAA+GGG | 0.617547 | 8:+24174668 | MsaT042562.1:CDS |
GGTAAACTTGGAACACTCGA+GGG | 0.626928 | 8:+24180009 | MsaT042562.1:CDS |
CATGCATCGGAAGTGAAGCT+CGG | 0.629593 | 8:-24174707 | None:intergenic |
CAAGAGAACTGGTATGAACA+GGG | 0.632120 | 8:-24176565 | None:intergenic |
TGTGGAAAACACCTGCTGAA+AGG | 0.636597 | 8:+24179381 | MsaT042562.1:CDS |
GGGTAAACTTGGAACACTCG+AGG | 0.640334 | 8:+24180008 | MsaT042562.1:CDS |
ATGGGAAGTAGAATCAGAGT+TGG | 0.641548 | 8:+24174650 | MsaT042562.1:CDS |
CCCGAGGAACCAGATGAGGA+AGG | 0.644618 | 8:-24179946 | None:intergenic |
CAGGCTCGCTCAGAATCGTG+AGG | 0.649410 | 8:+24177549 | MsaT042562.1:CDS |
AAACCAGGAAGAATTTGCCA+TGG | 0.653768 | 8:+24176823 | MsaT042562.1:CDS |
AATTCGATGCAGAATATGCA+AGG | 0.654839 | 8:+24179186 | MsaT042562.1:CDS |
TCTGATTATAGATTCAAACT+CGG | 0.655868 | 8:+24176499 | MsaT042562.1:intron |
GGGAATGTGGCAAATTACAT+GGG | 0.666390 | 8:+24179967 | MsaT042562.1:CDS |
CTTCCTCATCTGGTTCCTCG+GGG | 0.671637 | 8:+24179947 | MsaT042562.1:CDS |
GAACAAACACATTCACTGAG+TGG | 0.681277 | 8:+24178612 | MsaT042562.1:CDS |
ACACCGATGACAAGAATCAG+CGG | 0.687622 | 8:+24176885 | MsaT042562.1:CDS |
GCTCGCTCAGAATCGTGAGG+CGG | 0.692281 | 8:+24177552 | MsaT042562.1:CDS |
GTAATTTGCCACATTCCCCG+AGG | 0.720922 | 8:-24179962 | None:intergenic |
TCGATGCAGAATATGCAAGG+TGG | 0.769831 | 8:+24179189 | MsaT042562.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 24174650 | 24180425 | 24174650 | ID=MsaG042562 |
Chr8 | mRNA | 24174650 | 24180425 | 24174650 | ID=MsaT042562.1;Parent=MsaG042562 |
Chr8 | exon | 24174650 | 24174729 | 24174650 | ID=MsaT042562.1.exon1;Parent=MsaT042562.1 |
Chr8 | CDS | 24174650 | 24174729 | 24174650 | ID=cds.MsaT042562.1;Parent=MsaT042562.1 |
Chr8 | exon | 24175825 | 24175922 | 24175825 | ID=MsaT042562.1.exon2;Parent=MsaT042562.1 |
Chr8 | CDS | 24175825 | 24175922 | 24175825 | ID=cds.MsaT042562.1;Parent=MsaT042562.1 |
Chr8 | exon | 24176510 | 24176592 | 24176510 | ID=MsaT042562.1.exon3;Parent=MsaT042562.1 |
Chr8 | CDS | 24176510 | 24176592 | 24176510 | ID=cds.MsaT042562.1;Parent=MsaT042562.1 |
Chr8 | exon | 24176704 | 24176907 | 24176704 | ID=MsaT042562.1.exon4;Parent=MsaT042562.1 |
Chr8 | CDS | 24176704 | 24176907 | 24176704 | ID=cds.MsaT042562.1;Parent=MsaT042562.1 |
Chr8 | exon | 24177367 | 24177441 | 24177367 | ID=MsaT042562.1.exon5;Parent=MsaT042562.1 |
Chr8 | CDS | 24177367 | 24177441 | 24177367 | ID=cds.MsaT042562.1;Parent=MsaT042562.1 |
Chr8 | exon | 24177541 | 24177600 | 24177541 | ID=MsaT042562.1.exon6;Parent=MsaT042562.1 |
Chr8 | CDS | 24177541 | 24177600 | 24177541 | ID=cds.MsaT042562.1;Parent=MsaT042562.1 |
Chr8 | exon | 24178369 | 24178446 | 24178369 | ID=MsaT042562.1.exon7;Parent=MsaT042562.1 |
Chr8 | CDS | 24178369 | 24178446 | 24178369 | ID=cds.MsaT042562.1;Parent=MsaT042562.1 |
Chr8 | exon | 24178588 | 24178639 | 24178588 | ID=MsaT042562.1.exon8;Parent=MsaT042562.1 |
Chr8 | CDS | 24178588 | 24178639 | 24178588 | ID=cds.MsaT042562.1;Parent=MsaT042562.1 |
Chr8 | exon | 24179177 | 24179448 | 24179177 | ID=MsaT042562.1.exon9;Parent=MsaT042562.1 |
Chr8 | CDS | 24179177 | 24179448 | 24179177 | ID=cds.MsaT042562.1;Parent=MsaT042562.1 |
Chr8 | exon | 24179796 | 24180044 | 24179796 | ID=MsaT042562.1.exon10;Parent=MsaT042562.1 |
Chr8 | CDS | 24179796 | 24180044 | 24179796 | ID=cds.MsaT042562.1;Parent=MsaT042562.1 |
Chr8 | exon | 24180279 | 24180425 | 24180279 | ID=MsaT042562.1.exon11;Parent=MsaT042562.1 |
Chr8 | CDS | 24180279 | 24180425 | 24180279 | ID=cds.MsaT042562.1;Parent=MsaT042562.1 |
Gene Sequence |
Protein sequence |