AlfalfaGEDB | MsaG042594

M. sativa ssp. caerulea / MsaG042594

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042594	XP_013445108.1	95.175	228	6	2	1	223	1	228	7.47e-156	441

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042594	sp\|O04479\|AS2_ARATH	59.912	227	55	5	2	223	4	199	2.28e-74	226

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042594	tr\|V5RG59\|V5RG59_MEDTR	95.175	228	6	2	1	223	1	228	3.57e-156	441

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TFs/TRs:

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Gene ID	Type	Classification
MsaG042594	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042594	MtrunA17_Chr8g0353981	95.175	228	6	2	1	223	1	228	6.87e-160	441
MsaG042594	MtrunA17_Chr4g0058651	66.929	127	42	0	5	131	9	135	2.72e-59	185
MsaG042594	MtrunA17_Chr3g0117121	75.221	113	25	1	1	110	1	113	3.77e-58	182
MsaG042594	MtrunA17_Chr7g0227511	56.024	166	59	3	2	153	6	171	2.57e-57	179
MsaG042594	MtrunA17_Chr5g0402611	73.394	109	29	0	2	110	3	111	5.23e-54	175
MsaG042594	MtrunA17_Chr6g0449641	69.643	112	32	1	1	110	1	112	9.74e-54	169
MsaG042594	MtrunA17_Chr6g0449651	68.750	112	33	1	1	110	59	170	1.24e-52	168
MsaG042594	MtrunA17_Chr3g0097221	69.091	110	34	0	1	110	1	110	5.98e-51	167
MsaG042594	MtrunA17_Chr3g0115431	67.568	111	35	1	1	110	2	112	3.74e-48	157
MsaG042594	MtrunA17_Chr5g0437571	65.049	103	36	0	5	107	4	106	9.74e-47	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042594	AT1G65620.1	59.912	227	55	5	2	223	4	199	2.32e-75	226
MsaG042594	AT1G65620.4	59.912	227	55	5	2	223	4	199	2.32e-75	226
MsaG042594	AT1G65620.3	59.912	227	55	5	2	223	4	199	2.32e-75	226
MsaG042594	AT1G65620.5	59.912	227	55	5	2	223	4	199	2.32e-75	226
MsaG042594	AT1G65620.2	59.912	227	55	5	2	223	4	199	2.32e-75	226
MsaG042594	AT5G63090.4	69.291	127	34	2	1	123	1	126	7.63e-57	179
MsaG042594	AT5G63090.3	69.291	127	34	2	1	123	1	126	7.63e-57	179
MsaG042594	AT5G63090.2	69.291	127	34	2	1	123	1	126	7.63e-57	179
MsaG042594	AT5G63090.1	69.291	127	34	2	1	123	1	126	7.63e-57	179
MsaG042594	AT5G66870.1	75.455	110	27	0	1	110	1	110	1.05e-55	180

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Find 46 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGAGCATCGCAGCAG+CGG	0.588874	8:+24600079	MsaT042594.1:CDS
AATCAACTTCAACATGGTGG+TGG	0.618002	8:+24600362	MsaT042594.1:CDS
AATTAACAGCATCTTCACGT+TGG	0.680722	8:-24599920	None:intergenic
ACACCAACACAACCATAAAC+AGG	0.455574	8:-24599978	None:intergenic
ACAGCATCTTCACGTTGGTG+AGG	0.580209	8:-24599915	None:intergenic
ACGCAGAATACTGGTGGTGG+TGG	0.591657	8:+24600176	MsaT042594.1:CDS
AGAAACTTGCATGCTGCACA+TGG	0.636607	8:-24599765	None:intergenic
AGGAGCGGTTAACAGTACGG+AGG	0.803339	8:-24600394	None:intergenic
ATCAATCAACTTCAACATGG+TGG	0.690801	8:+24600359	MsaT042594.1:CDS
ATCGCAGCAGCGGCTACCGC+CGG	0.464845	8:+24600089	MsaT042594.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	24599747	24600418	24599747	ID=MsaG042594
Chr8	mRNA	24599747	24600418	24599747	ID=MsaT042594.1;Parent=MsaG042594
Chr8	exon	24599747	24600418	24599747	ID=MsaT042594.1.exon1;Parent=MsaT042594.1
Chr8	CDS	24599747	24600418	24599747	ID=cds.MsaT042594.1;Parent=MsaT042594.1

Gene Sequence

>MsaT042594.1

ATGGCATCCTCAAATTCACCATGTGCAGCATGCAAGTTTCTACGCCGCAAATGCCAACCAGAATGTGCATTTGCACCTTATTTTCCACCTGATCAGCCACAAAAATTTGCAAATGTTCATAGAATTTTTGGAGCAAGTAATGTTACAAAGCTTCTCAATGATTTACACCCTCACCAACGTGAAGATGCTGTTAATTCACTTGCTTATGAAGCTGAGATGCGACTTCGCGATCCTGTTTATGGTTGTGTTGGTGTAATTTCTCTCCTTCAACACCAACTTCGTCAGCTTCAAATGGATCTTTATTGTGCTAAATCCGAACTTTCTCGGTTTCAAAACTTGAGCATCGCAGCAGCGGCTACCGCCGGTCATGGACTCATAACCGGCATGACAGGTGAATCTGTCACGGCCGCTGCAAGTAATTACCACCACACGCAGAATACTGGTGGTGGTGGTAATAACAGTAACGGCCGTCAACATCATCATCAACATCATCAGTTTTTTCCAAGGGATCAACATCAACAACATAATTTGGTAAGAAATTTTGATGGTGGAATTGGGAACAACTATGATGCTAGTCTCTTGGCTATGAATATTTCTGCTAGCTTAGGACAGATCAATCAACTTCAACATGGTGGTGGTGGTGACGACCTCCGTACTGTTAACCGCTCCTAG

Protein sequence

>MsaT042594.1

MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRFQNLSIAAAATAGHGLITGMTGESVTAAASNYHHTQNTGGGGNNSNGRQHHHQHHQFFPRDQHQQHNLVRNFDGGIGNNYDASLLAMNISASLGQINQLQHGGGGDDLRTVNRS*