Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042678 | XP_004511180.1 | 37.952 | 166 | 86 | 5 | 477 | 626 | 281 | 445 | 1.88e-18 | 101 |
MsaG042678 | XP_004511180.1 | 50.365 | 411 | 180 | 10 | 1 | 404 | 1 | 394 | 2.67e-113 | 360 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042678 | sp|O24606|EIN3_ARATH | 47.557 | 307 | 144 | 6 | 12 | 309 | 33 | 331 | 1.29e-83 | 278 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042678 | tr|A0A1S2YWS8|A0A1S2YWS8_CICAR | 37.952 | 166 | 86 | 5 | 477 | 626 | 281 | 445 | 8.99e-19 | 101 |
MsaG042678 | tr|A0A1S2YWS8|A0A1S2YWS8_CICAR | 50.365 | 411 | 180 | 10 | 1 | 404 | 1 | 394 | 1.28e-113 | 360 |
Gene ID | Type | Classification |
---|---|---|
MsaG042678 | TF | EIL |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG004566 | MsaG042678 | 0.936424 | 5.075533e-97 | 3.516693e-92 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042678 | MtrunA17_Chr5g0440591 | 45.938 | 320 | 150 | 5 | 5 | 312 | 26 | 334 | 4.34e-86 | 281 |
MsaG042678 | MtrunA17_Chr3g0118361 | 45.171 | 321 | 150 | 7 | 6 | 314 | 30 | 336 | 3.57e-80 | 266 |
MsaG042678 | MtrunA17_Chr2g0329151 | 42.378 | 328 | 149 | 7 | 21 | 324 | 31 | 342 | 3.97e-73 | 246 |
MsaG042678 | MtrunA17_Chr3g0124291 | 46.281 | 242 | 119 | 4 | 47 | 285 | 57 | 290 | 5.53e-70 | 233 |
MsaG042678 | MtrunA17_Chr8g0382561 | 46.053 | 228 | 117 | 4 | 52 | 278 | 52 | 274 | 6.84e-65 | 220 |
MsaG042678 | MtrunA17_Chr6g0476301 | 45.643 | 241 | 122 | 4 | 73 | 313 | 1 | 232 | 2.55e-63 | 214 |
MsaG042678 | MtrunA17_Chr3g0080401 | 42.308 | 260 | 134 | 6 | 73 | 327 | 1 | 249 | 6.22e-63 | 211 |
MsaG042678 | MtrunA17_Chr6g0473191 | 49.261 | 203 | 97 | 2 | 73 | 275 | 1 | 197 | 8.76e-63 | 209 |
MsaG042678 | MtrunA17_Chr6g0476291 | 49.261 | 203 | 97 | 2 | 73 | 275 | 1 | 197 | 4.54e-62 | 207 |
MsaG042678 | MtrunA17_Chr7g0260281 | 74.167 | 120 | 31 | 0 | 62 | 181 | 1 | 120 | 8.72e-50 | 169 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042678 | AT3G20770.1 | 47.557 | 307 | 144 | 6 | 12 | 309 | 33 | 331 | 1.31e-84 | 278 |
MsaG042678 | AT2G27050.1 | 49.057 | 265 | 119 | 4 | 21 | 275 | 42 | 300 | 6.48e-80 | 264 |
MsaG042678 | AT1G73730.2 | 42.006 | 319 | 151 | 7 | 21 | 319 | 19 | 323 | 3.92e-70 | 237 |
MsaG042678 | AT1G73730.1 | 42.006 | 319 | 151 | 7 | 21 | 319 | 31 | 335 | 5.40e-70 | 237 |
MsaG042678 | AT5G10120.1 | 47.556 | 225 | 114 | 2 | 55 | 279 | 59 | 279 | 2.24e-68 | 230 |
MsaG042678 | AT5G21120.2 | 45.076 | 264 | 126 | 6 | 55 | 308 | 94 | 348 | 3.95e-66 | 226 |
MsaG042678 | AT5G21120.3 | 45.076 | 264 | 126 | 6 | 55 | 308 | 87 | 341 | 4.14e-66 | 226 |
MsaG042678 | AT5G21120.1 | 45.076 | 264 | 126 | 6 | 55 | 308 | 87 | 341 | 4.14e-66 | 226 |
MsaG042678 | AT5G65100.1 | 46.667 | 225 | 113 | 3 | 54 | 277 | 88 | 306 | 1.78e-64 | 222 |
Find 148 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCACCTTGTGCACTTTC+TGG | 0.076552 | 8:+25841415 | None:intergenic |
CCTACCTCAATCTGCTAATT+TGG | 0.151109 | 8:-25838889 | MsaT042678.1:CDS |
CCTAGCTGGGTTTCATTCTT+TGG | 0.171554 | 8:-25838745 | MsaT042678.1:CDS |
GGAAACAAATCCAAACATTT+TGG | 0.194985 | 8:+25838951 | None:intergenic |
AACAGGTTTCCTTTAGAAAA+AGG | 0.204240 | 8:-25840019 | MsaT042678.1:intron |
CGGTTCCATGGACACTTTCT+TGG | 0.205051 | 8:+25839270 | None:intergenic |
CATTGAATTTGAATATTTCT+TGG | 0.208852 | 8:+25841038 | None:intergenic |
GGACTTCATTATAATGTTAA+TGG | 0.231962 | 8:-25841067 | MsaT042678.1:CDS |
GAATATAAGCATGGGTATTA+TGG | 0.267844 | 8:-25841353 | MsaT042678.1:CDS |
CTCATATATAAAATGGAAAT+TGG | 0.269046 | 8:-25841460 | None:intergenic |
GGCCTAATAACCTTGTTTCT+TGG | 0.269096 | 8:+25838846 | None:intergenic |
ACCACGTTGCTTTCATTTGC+TGG | 0.284522 | 8:+25839197 | None:intergenic |
CAACAATGAAGAAAGAAATT+TGG | 0.285533 | 8:-25841389 | MsaT042678.1:CDS |
ACCATGTTGCTTCCATTTGC+TGG | 0.285782 | 8:+25839059 | None:intergenic |
TGTACGTACCTTCTTTGATT+TGG | 0.287101 | 8:+25840923 | None:intergenic |
TCCACCTCATTGTGTTGATT+TGG | 0.292463 | 8:-25839582 | MsaT042678.1:CDS |
CATTTGGATTTGTTTCCATT+TGG | 0.311773 | 8:-25839014 | MsaT042678.1:CDS |
CAATAACCAACCAAAATGTT+TGG | 0.318257 | 8:-25838961 | MsaT042678.1:CDS |
AGATCATGAGGTTTCCTATA+GGG | 0.321543 | 8:+25839917 | None:intergenic |
TTGCTTTCATTTGCTGGAAA+TGG | 0.327853 | 8:+25839203 | None:intergenic |
CAATAATCAATGTCAACATT+TGG | 0.329717 | 8:-25839030 | MsaT042678.1:CDS |
TTAATAACCATGCTGCTTCC+AGG | 0.333225 | 8:+25839467 | None:intergenic |
CCAACCTCAACAATTGGATT+TGG | 0.333661 | 8:-25839162 | MsaT042678.1:CDS |
TTGCTTCCATTTGCTGGAAA+TGG | 0.337238 | 8:+25839065 | None:intergenic |
AGAGCTAGGTACGTGGTTAC+TGG | 0.338068 | 8:-25838810 | MsaT042678.1:CDS |
TTCTGTAAGGACAATTCATT+TGG | 0.339985 | 8:+25838706 | None:intergenic |
ACCATGGTGCTTCCATTTGA+TGG | 0.342571 | 8:+25839335 | None:intergenic |
TATGATGTTGATGGAAATAA+TGG | 0.343859 | 8:-25839641 | MsaT042678.1:CDS |
CCAACCTCAATGTATGGATT+TGG | 0.345365 | 8:-25839300 | MsaT042678.1:CDS |
CCAACCTCAATGTATGGATT+TGG | 0.345365 | 8:-25839438 | MsaT042678.1:CDS |
CAATAACCAACCTCAACAAT+TGG | 0.352736 | 8:-25839168 | MsaT042678.1:CDS |
CGTGCTGATGGATTTGTATA+TGG | 0.353695 | 8:-25841208 | MsaT042678.1:CDS |
TGGTTCCATGAACACTTTCT+TGG | 0.354407 | 8:+25839408 | None:intergenic |
CCAACGTCAATGTATGGATT+TGG | 0.355037 | 8:-25839090 | MsaT042678.1:CDS |
CCAACGTCAATGTATGGATT+TGG | 0.355037 | 8:-25839228 | MsaT042678.1:CDS |
CCAACGTCAATGTATGGATT+TGG | 0.355037 | 8:-25839366 | MsaT042678.1:CDS |
CCCTTCCAAGAAAGTGTTCA+TGG | 0.359580 | 8:-25839413 | MsaT042678.1:CDS |
GTGCTCCTATTGTTGTGTTT+AGG | 0.361123 | 8:+25840978 | None:intergenic |
TCTTGAACATTGTCTTTGAA+TGG | 0.363036 | 8:+25839557 | None:intergenic |
CTAGCTCTCCTGGTGGCAAT+TGG | 0.365390 | 8:+25838825 | None:intergenic |
CCAAATGGAAGCAATAATAA+TGG | 0.368258 | 8:-25839695 | MsaT042678.1:CDS |
CTCCAAGAAACAAGGTTATT+AGG | 0.373520 | 8:-25838848 | MsaT042678.1:CDS |
GAACTCCTAAACACAACAAT+AGG | 0.388891 | 8:-25840983 | MsaT042678.1:CDS |
CATTATAATGAAGTCCTTGT+TGG | 0.390991 | 8:+25841074 | None:intergenic |
TTGGTTCCATTTCCATCAAA+TGG | 0.392196 | 8:-25839347 | MsaT042678.1:CDS |
GTGCTTCCATTTGATGGAAA+TGG | 0.394257 | 8:+25839341 | None:intergenic |
TGTTTGGATTTGTTTCCATC+TGG | 0.396974 | 8:-25838945 | MsaT042678.1:CDS |
CTAGAAGAGTTATTTCTGTA+AGG | 0.397016 | 8:+25838693 | None:intergenic |
TTCCTATAGGGTGGAGGACC+TGG | 0.400683 | 8:+25839929 | None:intergenic |
CTATCATGTTCATTGTTGCC+TGG | 0.400918 | 8:+25841298 | None:intergenic |
CCATTATTATTGCTTCCATT+TGG | 0.403275 | 8:+25839695 | None:intergenic |
TTGGTTCCATTTCCAGCAAA+TGG | 0.410660 | 8:-25839071 | MsaT042678.1:CDS |
TCATTATAATGTTAATGGTT+CGG | 0.414528 | 8:-25841062 | MsaT042678.1:CDS |
CCTTATCATAGCCACCTAGC+TGG | 0.416024 | 8:-25838759 | MsaT042678.1:CDS |
GAGCGAAGTTAGTGGCCTCT+TGG | 0.417939 | 8:+25839777 | None:intergenic |
ACTCATAATTATGATGTTGA+TGG | 0.419818 | 8:-25839650 | MsaT042678.1:CDS |
CCCCTTGGCCACCATGGTGG+TGG | 0.420832 | 8:+25839992 | None:intergenic |
TAGATCATGAGGTTTCCTAT+AGG | 0.421514 | 8:+25839916 | None:intergenic |
CAATAACCAACGTCAATGTA+TGG | 0.424652 | 8:-25839096 | MsaT042678.1:CDS |
CAATAACCAACGTCAATGTA+TGG | 0.424652 | 8:-25839234 | MsaT042678.1:CDS |
TGGAAAATAGCTGTTCTAAC+AGG | 0.425327 | 8:-25839884 | MsaT042678.1:CDS |
TAATAACCAACGTCAATGTA+TGG | 0.431013 | 8:-25839372 | MsaT042678.1:CDS |
CAATAACCAACCTCAATGTA+TGG | 0.431840 | 8:-25839306 | MsaT042678.1:CDS |
TTGTCATGTCTTATGACATT+TGG | 0.434470 | 8:-25840953 | MsaT042678.1:CDS |
AAATAACCAACCTCAATGTA+TGG | 0.435118 | 8:-25839444 | MsaT042678.1:CDS |
CCATGGACACTTTCTTGGAA+TGG | 0.437818 | 8:+25839275 | None:intergenic |
AGCGAAGTTAGTGGCCTCTT+GGG | 0.440264 | 8:+25839778 | None:intergenic |
CCAGGAACACTTGCTTGAAA+AGG | 0.440379 | 8:+25839485 | None:intergenic |
TTCCACCACCATGGTGGCCA+AGG | 0.449334 | 8:-25839994 | MsaT042678.1:CDS |
CCAGCTAGGTGGCTATGATA+AGG | 0.457593 | 8:+25838759 | None:intergenic |
CACCATTCTTCATCTCCCCT+TGG | 0.458151 | 8:+25839977 | None:intergenic |
CTGAAAATCTTCAACATTGG+TGG | 0.458620 | 8:-25841147 | MsaT042678.1:CDS |
AGCTGGGTTTCATTCTTTGG+AGG | 0.464728 | 8:-25838742 | MsaT042678.1:CDS |
TCAAATGAGTTACCACCAAA+TGG | 0.472512 | 8:-25839710 | MsaT042678.1:CDS |
TTATTATTGCTTCCATTTGG+TGG | 0.472616 | 8:+25839698 | None:intergenic |
ATGCACAAGTTGGTAGATCT+TGG | 0.474850 | 8:-25841232 | MsaT042678.1:CDS |
CCAAATCCAATTGTTGAGGT+TGG | 0.477182 | 8:+25839162 | None:intergenic |
ATCCAGGTCCTCCACCCTAT+AGG | 0.477367 | 8:-25839931 | MsaT042678.1:CDS |
AAAGTGAAGTTTGATAGAAA+TGG | 0.479002 | 8:-25841118 | MsaT042678.1:CDS |
GTAGATCTTGGTCGTGCTGA+TGG | 0.482508 | 8:-25841220 | MsaT042678.1:CDS |
GTTGTAATCCAAATCAAAGA+AGG | 0.482832 | 8:-25840931 | MsaT042678.1:intron |
GACCAGGTAGTTCAAGTAAT+GGG | 0.486798 | 8:-25839616 | MsaT042678.1:CDS |
CAGCTAGGTGGCTATGATAA+GGG | 0.488469 | 8:+25838760 | None:intergenic |
CTTATCATAGCCACCTAGCT+GGG | 0.489975 | 8:-25838758 | MsaT042678.1:CDS |
TCATCTCCCCTTGGCCACCA+TGG | 0.490729 | 8:+25839986 | None:intergenic |
GGAACCAAATTAGCAGATTG+AGG | 0.500479 | 8:+25838885 | None:intergenic |
AATAACAAGAGCGAAGTTAG+TGG | 0.507267 | 8:+25839769 | None:intergenic |
TGGTACTTCACTATTGCAGC+AGG | 0.513940 | 8:+25841094 | None:intergenic |
TCCATGAACACTTTCTTGGA+AGG | 0.525416 | 8:+25839412 | None:intergenic |
CCAAATCCATACATTGAGGT+TGG | 0.529172 | 8:+25839300 | None:intergenic |
CCAAATCCATACATTGAGGT+TGG | 0.529172 | 8:+25839438 | None:intergenic |
CCATGAACACTTTCTTGGAA+GGG | 0.530268 | 8:+25839413 | None:intergenic |
TGCCCATTACTTGAACTACC+TGG | 0.531064 | 8:+25839614 | None:intergenic |
CAATTGCCACCAGGAGAGCT+AGG | 0.534808 | 8:-25838824 | MsaT042678.1:CDS |
TTGTGTTATCGAAAGGATCC+AGG | 0.537060 | 8:-25839947 | MsaT042678.1:CDS |
TTCAAAGACAATGTTCAAGA+AGG | 0.537403 | 8:-25839554 | MsaT042678.1:CDS |
CATCTGAAAATCTTCAACAT+TGG | 0.541776 | 8:-25841150 | MsaT042678.1:CDS |
CCAAATTAGCAGATTGAGGT+AGG | 0.544542 | 8:+25838889 | None:intergenic |
AACCACGTACCTAGCTCTCC+TGG | 0.545227 | 8:+25838815 | None:intergenic |
TCCACCACCATGGTGGCCAA+GGG | 0.545349 | 8:-25839993 | MsaT042678.1:CDS |
GAAATTTGGAGGAATATGAA+AGG | 0.546481 | 8:-25841375 | MsaT042678.1:CDS |
CCATTCCAAGAAAGTGTCCA+TGG | 0.548559 | 8:-25839275 | MsaT042678.1:CDS |
AGATAAAATGTCTGCCCAAG+AGG | 0.559954 | 8:-25839792 | MsaT042678.1:CDS |
GGAACCAAATCCAATTGTTG+AGG | 0.562432 | 8:+25839158 | None:intergenic |
CCATTCCAAGAAAATGTCCA+TGG | 0.563991 | 8:-25839137 | MsaT042678.1:CDS |
TTGGTTATTGTTAACAACCA+TGG | 0.564781 | 8:+25839319 | None:intergenic |
ATATGAAAGGAATATAAGCA+TGG | 0.566014 | 8:-25841362 | MsaT042678.1:CDS |
GGCCAAGGGGAGATGAAGAA+TGG | 0.566706 | 8:-25839979 | MsaT042678.1:CDS |
GGACCAGGTAGTTCAAGTAA+TGG | 0.567507 | 8:-25839617 | MsaT042678.1:CDS |
CAATGAAGAAAGAAATTTGG+AGG | 0.568734 | 8:-25841386 | MsaT042678.1:CDS |
TTATTAGGCCAATTGCCACC+AGG | 0.570900 | 8:-25838833 | MsaT042678.1:CDS |
GCCGCTATTGTGTTATCGAA+AGG | 0.571370 | 8:-25839954 | MsaT042678.1:CDS |
TATGAAAGGAATATAAGCAT+GGG | 0.585257 | 8:-25841361 | MsaT042678.1:CDS |
ATTGAAGAGTATGCACAAGT+TGG | 0.591118 | 8:-25841242 | MsaT042678.1:CDS |
GATGGAAATAATGGAGGACC+AGG | 0.593292 | 8:-25839632 | MsaT042678.1:CDS |
AAATCTTCAACATTGGTGGA+AGG | 0.602303 | 8:-25841143 | MsaT042678.1:CDS |
TCTCCCCTTGGCCACCATGG+TGG | 0.603176 | 8:+25839989 | None:intergenic |
TGAGGTTTCCTATAGGGTGG+AGG | 0.603546 | 8:+25839923 | None:intergenic |
CAATGTTCAAGAAGGCAACA+TGG | 0.603751 | 8:-25839546 | MsaT042678.1:CDS |
CCAAAGAATGAAACCCAGCT+AGG | 0.605751 | 8:+25838745 | None:intergenic |
CCAAATCCATACATTGACGT+TGG | 0.608283 | 8:+25839090 | None:intergenic |
CCAAATCCATACATTGACGT+TGG | 0.608283 | 8:+25839228 | None:intergenic |
CCAAATCCATACATTGACGT+TGG | 0.608283 | 8:+25839366 | None:intergenic |
GGAACCAAATCCATACATTG+AGG | 0.608410 | 8:+25839296 | None:intergenic |
TCCAGCAAATGGAAGCAACA+TGG | 0.615255 | 8:-25839060 | MsaT042678.1:CDS |
TCATGAGGTTTCCTATAGGG+TGG | 0.619245 | 8:+25839920 | None:intergenic |
ACCAAATCAACACAATGAGG+TGG | 0.621822 | 8:+25839581 | None:intergenic |
AAGTGTTCATGGAACCAACA+TGG | 0.623776 | 8:-25839402 | MsaT042678.1:CDS |
GGAACCAAATCCATACATTG+AGG | 0.626872 | 8:+25839434 | None:intergenic |
CCACCACCATGGTGGCCAAG+GGG | 0.638555 | 8:-25839992 | MsaT042678.1:CDS |
AAATGTCCATGGAACCAACA+TGG | 0.644962 | 8:-25839126 | MsaT042678.1:CDS |
AAGTGTCCATGGAACCGACA+TGG | 0.646793 | 8:-25839264 | MsaT042678.1:CDS |
TCCATCAAATGGAAGCACCA+TGG | 0.648218 | 8:-25839336 | MsaT042678.1:CDS |
AAGTGTTCCTGGAAGCAGCA+TGG | 0.648471 | 8:-25839474 | MsaT042678.1:CDS |
CAAAATCTATACATTGACGT+TGG | 0.654969 | 8:+25839510 | None:intergenic |
GATGTTGATGGAAATAATGG+AGG | 0.666614 | 8:-25839638 | MsaT042678.1:CDS |
CAAGGGGAGATGAAGAATGG+TGG | 0.668606 | 8:-25839976 | MsaT042678.1:CDS |
TCCTTTCGATAACACAATAG+CGG | 0.668694 | 8:+25839953 | None:intergenic |
AAGAATGAAACCCAGCTAGG+TGG | 0.679661 | 8:+25838748 | None:intergenic |
GGAACCAAATCAACACAATG+AGG | 0.681148 | 8:+25839578 | None:intergenic |
TGGCTATGATAAGGGCAATG+TGG | 0.683056 | 8:+25838768 | None:intergenic |
CACCAGGAGAGCTAGGTACG+TGG | 0.686873 | 8:-25838817 | MsaT042678.1:CDS |
AAATCACCAGAAAGTGCACA+AGG | 0.687654 | 8:-25841421 | MsaT042678.1:CDS |
GCAATAGTGAAGTACCAACA+AGG | 0.715198 | 8:-25841088 | MsaT042678.1:CDS |
CACGTACCTAGCTCTCCTGG+TGG | 0.720148 | 8:+25838818 | None:intergenic |
ATTGAGTAACACTATAGACA+AGG | 0.724328 | 8:-25841266 | MsaT042678.1:CDS |
AAGGTGTTCCACCACCATGG+TGG | 0.732712 | 8:-25840000 | MsaT042678.1:CDS |
TCCAGCAAATGAAAGCAACG+TGG | 0.752814 | 8:-25839198 | MsaT042678.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 25838686 | 25841470 | 25838686 | ID=MsaG042678 |
Chr8 | mRNA | 25838686 | 25841470 | 25838686 | ID=MsaT042678.1;Parent=MsaG042678 |
Chr8 | exon | 25838686 | 25840036 | 25838686 | ID=MsaT042678.1.exon2;Parent=MsaT042678.1 |
Chr8 | CDS | 25838686 | 25840036 | 25838686 | ID=cds.MsaT042678.1;Parent=MsaT042678.1 |
Chr8 | exon | 25840932 | 25841470 | 25840932 | ID=MsaT042678.1.exon1;Parent=MsaT042678.1 |
Chr8 | CDS | 25840932 | 25841470 | 25840932 | ID=cds.MsaT042678.1;Parent=MsaT042678.1 |
Gene Sequence |
Protein sequence |