AlfalfaGEDB | MsaG042702

M. sativa ssp. caerulea / MsaG042702

KEGG: K04454 K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042702	BBN69862.1	46.535	101	38	2	2	86	151	251	2.46e-16	82.8

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042702	sp\|Q9FKK2\|AGL62_ARATH	35.036	137	41	4	2	90	18	154	2.48e-13	66.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042702	tr\|G7L6X5\|G7L6X5_MEDTR	47.368	133	25	3	2	89	20	152	6.07e-24	100

TFs/TRs:

Gene ID	Type	Classification
MsaG042702	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000143	MsaG042702	0.851191	1.990944e-60	1.124236e-57
MsaG001363	MsaG042702	0.835675	2.668344e-56	9.120020e-54
MsaG002050	MsaG042702	0.825379	8.592414e-54	2.184072e-51
MsaG002113	MsaG042702	0.847380	2.264698e-59	1.123211e-56
MsaG002225	MsaG042702	0.810835	1.619774e-50	2.823066e-48
MsaG003809	MsaG042702	0.825537	7.890131e-54	2.014333e-51
MsaG003997	MsaG042702	0.842919	3.589630e-58	1.537357e-55
MsaG004531	MsaG042702	0.831534	2.852288e-55	8.627515e-53
MsaG004716	MsaG042702	0.866869	4.181286e-65	4.260011e-62
MsaG004889	MsaG042702	0.859840	6.145084e-63	4.748860e-60
MsaG005541	MsaG042702	0.852480	8.613514e-61	5.088089e-58
MsaG006034	MsaG042702	0.821953	5.400917e-53	1.250935e-50
MsaG005924	MsaG042702	0.851898	1.258045e-60	7.282144e-58
MsaG007137	MsaG042702	0.840149	1.911655e-57	7.497541e-55
MsaG007237	MsaG042702	0.838058	6.618291e-57	2.431712e-54
MsaG007255	MsaG042702	0.834502	5.255007e-56	1.734224e-53
MsaG007571	MsaG042702	0.872717	5.267723e-67	6.854802e-64
MsaG011531	MsaG042702	0.815272	1.742084e-51	3.390894e-49
MsaG012173	MsaG042702	0.831787	2.472515e-55	7.534831e-53
MsaG012333	MsaG042702	0.822913	3.239523e-53	7.699707e-51
MsaG012469	MsaG042702	0.869737	5.025943e-66	5.760481e-63
MsaG042702	MsaG043755	0.862443	1.000400e-63	8.542457e-61
MsaG042702	MsaG045030	0.831421	3.041256e-55	9.168531e-53
MsaG042702	MsaG045598	0.805941	1.771905e-49	2.745959e-47
MsaG042702	MsaG046652	0.843959	1.899712e-58	8.411424e-56
MsaG042702	MsaG046927	0.821381	7.313969e-53	1.668463e-50
MsaG042702	MsaG046943	0.841322	9.452538e-58	3.846878e-55
MsaG042702	MsaG047049	0.834485	5.305482e-56	1.749999e-53
MsaG042702	MsaG002256	0.831567	2.799308e-55	8.475482e-53
MsaG042702	MsaG001975	0.833412	9.817598e-56	3.137026e-53
MsaG042702	MsaG002349	0.815106	1.895771e-51	3.674430e-49
MsaG042702	MsaG008957	0.814828	2.184108e-51	4.203791e-49
MsaG042702	MsaG008556	0.883152	1.221402e-70	2.558461e-67
MsaG042702	MsaG011732	0.805593	2.095791e-49	3.221374e-47
MsaG042702	MsaG023461	0.807145	9.902117e-50	1.578781e-47
MsaG042702	MsaG028857	0.850028	4.210125e-60	2.283807e-57
MsaG042702	MsaG030577	0.850912	2.383554e-60	1.333146e-57
MsaG042702	MsaG033422	0.835471	3.001834e-56	1.019802e-53
MsaG042702	MsaG035322	0.824189	1.634963e-53	4.022626e-51
MsaG017137	MsaG042702	0.816007	1.197354e-51	2.374341e-49
MsaG017440	MsaG042702	0.872045	8.802874e-67	1.112890e-63
MsaG017530	MsaG042702	0.845810	6.049197e-59	2.847007e-56
MsaG018527	MsaG042702	0.853927	3.329855e-61	2.070352e-58
MsaG018582	MsaG042702	0.860359	4.292128e-63	3.383876e-60
MsaG018652	MsaG042702	0.808434	5.285178e-50	8.691037e-48
MsaG018662	MsaG042702	0.834327	5.811669e-56	1.907966e-53
MsaG018701	MsaG042702	0.839861	2.271589e-57	8.829422e-55
MsaG019728	MsaG042702	0.836832	1.359798e-56	4.812455e-54
MsaG019974	MsaG042702	0.858655	1.388127e-62	1.025669e-59
MsaG020381	MsaG042702	0.833491	9.383018e-56	3.005094e-53
MsaG020660	MsaG042702	0.872943	4.428917e-67	5.820399e-64
MsaG021588	MsaG042702	0.809119	3.778941e-50	6.317591e-48
MsaG022399	MsaG042702	0.806951	1.087757e-49	1.726386e-47
MsaG023618	MsaG042702	0.841013	1.138726e-57	4.589110e-55
MsaG023694	MsaG042702	0.869145	7.811805e-66	8.734030e-63
MsaG024094	MsaG042702	0.863734	4.007511e-64	3.600162e-61
MsaG026607	MsaG042702	0.806412	1.411845e-49	2.212576e-47
MsaG027083	MsaG042702	0.883574	8.556851e-71	1.829524e-67
MsaG027864	MsaG042702	0.859658	6.970655e-63	5.349382e-60
MsaG028062	MsaG042702	0.872178	7.954870e-67	1.011498e-63
MsaG028106	MsaG042702	0.855464	1.200220e-61	7.885233e-59
MsaG028119	MsaG042702	0.819346	2.131147e-52	4.607229e-50
MsaG028191	MsaG042702	0.805305	2.406166e-49	3.673797e-47
MsaG028276	MsaG042702	0.862938	7.049830e-64	6.137792e-61
MsaG028814	MsaG042702	0.803296	6.278534e-49	9.149985e-47
MsaG028861	MsaG042702	0.862956	6.961185e-64	6.064667e-61
MsaG028877	MsaG042702	0.834347	5.743764e-56	1.886827e-53
MsaG029072	MsaG042702	0.875743	5.027193e-68	7.472149e-65
MsaG029250	MsaG042702	0.851390	1.749950e-60	9.949920e-58
MsaG030112	MsaG042702	0.908809	2.734712e-81	2.392646e-77
MsaG034783	MsaG042702	0.859263	9.147589e-63	6.916284e-60
MsaG036058	MsaG042702	0.861251	2.308079e-63	1.882020e-60
MsaG040389	MsaG042702	0.827381	2.881055e-54	7.742999e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042702	MtrunA17_Chr8g0355091	47.368	133	25	3	2	89	20	152	1.17e-27	100
MsaG042702	MtrunA17_Chr1g0206691	44.361	133	29	2	2	89	3	135	9.58e-27	97.8
MsaG042702	MtrunA17_Chr1g0206701	45.113	133	28	2	2	89	20	152	1.24e-26	97.8
MsaG042702	MtrunA17_Chr1g0206721	45.255	137	29	4	2	92	20	156	1.44e-26	97.4
MsaG042702	MtrunA17_Chr2g0292791	45.865	133	27	4	2	89	20	152	2.06e-25	94.7
MsaG042702	MtrunA17_Chr1g0149391	45.113	133	28	3	2	89	20	152	4.65e-25	93.6
MsaG042702	MtrunA17_Chr3g0099421	45.113	133	28	4	2	89	45	177	2.02e-24	92.4
MsaG042702	MtrunA17_Chr1g0206991	41.791	134	33	3	2	90	20	153	7.23e-23	86.7
MsaG042702	MtrunA17_Chr3g0089141	40.602	133	34	3	2	89	20	152	1.49e-21	84.3
MsaG042702	MtrunA17_Chr1g0208561	39.850	133	35	3	2	89	20	152	8.16e-21	82.4
MsaG042702	MtrunA17_Chr2g0325971	39.850	133	35	3	2	89	20	152	1.23e-19	79.3
MsaG042702	MtrunA17_Chr1g0208581	39.098	133	36	3	2	89	20	152	8.48e-19	77.0
MsaG042702	MtrunA17_Chr1g0188671	36.567	134	40	2	2	90	58	191	1.21e-18	77.4
MsaG042702	MtrunA17_Chr5g0419601	39.535	129	33	3	2	85	20	148	1.49e-17	73.9
MsaG042702	MtrunA17_Chr2g0317481	36.090	133	40	2	2	89	20	152	1.03e-16	72.0
MsaG042702	MtrunA17_Chr2g0317451	36.090	133	40	2	2	89	20	152	1.11e-16	71.6
MsaG042702	MtrunA17_Chr1g0187361	37.984	129	35	4	2	85	20	148	2.30e-16	70.9
MsaG042702	MtrunA17_Chr5g0422421	35.385	130	39	2	2	86	20	149	3.65e-16	70.5
MsaG042702	MtrunA17_Chr3g0119901	36.508	126	33	3	3	81	21	146	5.46e-16	69.3
MsaG042702	MtrunA17_Chr3g0085241	36.029	136	36	4	3	90	53	185	8.81e-16	69.7
MsaG042702	MtrunA17_Chr3g0099411	77.500	40	9	0	2	41	20	59	2.63e-14	65.1
MsaG042702	MtrunA17_Chr3g0111841	69.231	39	12	0	3	41	8	46	1.89e-11	54.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042702	AT5G60440.1	35.036	137	41	4	2	90	18	154	2.52e-14	66.6
MsaG042702	AT4G36590.1	69.231	39	12	0	2	40	18	56	1.79e-11	58.2

Find 18 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCGACCGAGGCTCAATTT+TGG	0.310911	8:-26144693	MsaT042702.1:CDS
TGGTGGGCTGGTCCCGTTGA+TGG	0.316276	8:-26144673	MsaT042702.1:CDS
GTCCCGTTGATGGGATGAAT+AGG	0.432754	8:-26144663	MsaT042702.1:CDS
CCTCGGTCGCTTTGCGCAAG+TGG	0.449815	8:+26144704	None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG	0.452333	8:-26144672	MsaT042702.1:CDS
TCCCGTTGATGGGATGAATA+GGG	0.453040	8:-26144662	MsaT042702.1:CDS
GCCCTATTCATCCCATCAAC+GGG	0.481029	8:+26144661	None:intergenic
ACTGAGAGTGCAAAGCTCAC+TGG	0.526727	8:+26144960	None:intergenic
GGCCCTATTCATCCCATCAA+CGG	0.536262	8:+26144660	None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG	0.553366	8:-26144996	MsaT042702.1:CDS
CCACTTGCGCAAAGCGACCG+AGG	0.571740	8:-26144704	MsaT042702.1:CDS
ACTTTCTCGAAGCGCCGTAG+TGG	0.571963	8:-26144997	MsaT042702.1:CDS
AATGAAAATACCTTCTCCCC+AGG	0.587583	8:+26144909	None:intergenic
AGCCCACCAAAATTGAGCCT+CGG	0.589062	8:+26144687	None:intergenic
GATCAACGATTCATCGGACA+TGG	0.593206	8:-26144754	MsaT042702.1:CDS
GACTCAGATCAACGATTCAT+CGG	0.601432	8:-26144760	MsaT042702.1:CDS
AGTGAGCTTTGCACTCTCAG+TGG	0.609659	8:-26144958	MsaT042702.1:CDS
CTTTCTTGAAGAGCCCACTA+CGG	0.610979	8:+26144983	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	26144630	26145043	26144630	ID=MsaG042702
Chr8	mRNA	26144630	26145043	26144630	ID=MsaT042702.1;Parent=MsaG042702
Chr8	exon	26144630	26144784	26144630	ID=MsaT042702.1.exon2;Parent=MsaT042702.1
Chr8	CDS	26144630	26144784	26144630	ID=cds.MsaT042702.1;Parent=MsaT042702.1
Chr8	exon	26144920	26145043	26144920	ID=MsaT042702.1.exon1;Parent=MsaT042702.1
Chr8	CDS	26144920	26145043	26144920	ID=cds.MsaT042702.1;Parent=MsaT042702.1

Gene Sequence	>MsaT042702.1 ATGAGCAAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCAGTGGTGCAGATGTTGCTCGTTGTTTTCTCACCTGGGGAGAAGCTGACTCAGATCAACGATTCATCGGACATGGAGAAGAAAGCGTCTTTGAAGAGCTGAACCACTTGCGCAAAGCGACCGAGGCTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGATTTTTCAAAAGGCTTTGGATGA
Protein sequence	>MsaT042702.1 MSKSNLQVTFSKRRSGLFKKASELCTLSGADVARCFLTWGEADSDQRFIGHGEESVFEELNHLRKATEAQFWWAGPVDGMNRAQLDFSKGFG*