AlfalfaGEDB | MsaG042708

M. sativa ssp. caerulea / MsaG042708

KEGG: K04454 K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042708	XP_003628107.1	92.405	237	18	0	1	237	1	237	4.51e-161	455

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042708	sp\|Q9FKK2\|AGL62_ARATH	53.723	188	80	3	5	189	3	186	6.47e-59	191

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042708	tr\|G7L6X5\|G7L6X5_MEDTR	92.405	237	18	0	1	237	1	237	2.15e-161	455

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG042708	TF	MADS-M-type

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042708	MtrunA17_Chr8g0355091	92.405	237	18	0	1	237	1	237	4.15e-165	455
MsaG042708	MtrunA17_Chr1g0206701	90.717	237	22	0	1	237	1	237	5.15e-153	424
MsaG042708	MtrunA17_Chr1g0206721	89.041	219	24	0	1	219	1	219	3.75e-148	412
MsaG042708	MtrunA17_Chr1g0149391	89.030	237	26	0	1	237	1	237	9.74e-145	404
MsaG042708	MtrunA17_Chr2g0292791	86.076	237	33	0	1	237	1	237	4.62e-144	402
MsaG042708	MtrunA17_Chr3g0099421	84.932	219	33	0	1	219	26	244	8.19e-140	392
MsaG042708	MtrunA17_Chr1g0206691	82.727	220	38	0	18	237	1	220	2.06e-135	379
MsaG042708	MtrunA17_Chr3g0099411	78.539	219	28	1	1	219	1	200	2.72e-122	346
MsaG042708	MtrunA17_Chr5g0422941	67.511	237	77	0	1	237	1	237	4.96e-118	336
MsaG042708	MtrunA17_Chr2g0300441	70.042	237	70	1	1	237	1	236	2.10e-117	334

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042708	AT5G60440.1	53.723	188	80	3	5	189	3	186	6.57e-60	191
MsaG042708	AT2G24840.1	48.780	164	73	4	6	163	60	218	1.79e-41	142
MsaG042708	AT4G36590.1	46.914	162	80	2	5	160	3	164	1.93e-39	137
MsaG042708	AT1G01530.1	41.667	192	100	4	4	192	2	184	1.38e-38	134
MsaG042708	AT1G65360.1	38.326	227	125	6	5	225	3	220	1.57e-37	131
MsaG042708	AT2G34440.1	41.985	131	66	3	9	134	2	127	3.57e-25	97.8
MsaG042708	AT3G66656.1	40.157	127	72	1	9	131	2	128	2.91e-24	95.5
MsaG042708	AT3G04100.1	32.237	152	99	3	2	149	7	158	1.09e-22	92.4
MsaG042708	AT1G72350.1	54.795	73	31	1	9	81	43	113	4.59e-20	85.9
MsaG042708	AT1G28460.1	31.792	173	108	3	5	174	4	169	1.05e-19	83.6

Showing 1 to 10 of 124 entries

Previous1 2 3 4 5…13Next

Find 53 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAATGAGATTGCAACAT+AGG	0.480998	8:+26188428	None:intergenic
AACCCACCAAAATTGAGCCT+CGG	0.597830	8:+26188676	None:intergenic
AATGAAAATACCTTCTCCCC+AGG	0.587583	8:+26188896	None:intergenic
ACAAATGAGATTGCAACATA+GGG	0.555620	8:+26188429	None:intergenic
ACTGAGAGTGCAAAGCTCAC+TGG	0.526727	8:+26188949	None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG	0.571963	8:-26188986	MsaT042708.1:CDS
AGAGCTGAACCACTTACGCA+AGG	0.653927	8:-26188702	MsaT042708.1:CDS
AGGCGACCGAGGCTCAATTT+TGG	0.319875	8:-26188682	MsaT042708.1:CDS
AGTATTGAGCTCGCGCACGT+TGG	0.531885	8:+26188775	None:intergenic
AGTGAGCTTTGCACTCTCAG+TGG	0.609659	8:-26188947	MsaT042708.1:CDS

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	26188373	26189086	26188373	ID=MsaG042708
Chr8	mRNA	26188373	26189086	26188373	ID=MsaT042708.1;Parent=MsaG042708
Chr8	exon	26188373	26189086	26188373	ID=MsaT042708.1.exon1;Parent=MsaT042708.1
Chr8	CDS	26188373	26189086	26188373	ID=cds.MsaT042708.1;Parent=MsaT042708.1

Gene Sequence

>MsaT042708.1

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCAGTGGTGCAGATGTTGCTCTCATTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACAGTCATAGAGCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTAGACATGGAGAAGAAACGTGCTAAAGAGCTGAACCACTTACGCAAGGCGACCGAGGCTCAATTTTGGTGGGTTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGACTAAGAAACTGGTTGCACATCATGCTGATAGGCTTGTTATCCAGGGTGCTCCTACTCAAACCATTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAGCACAGTTTTTTCAGAACCCTATGTTGCAATCTCATTTGTTTAGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA

Protein sequence

>MsaT042708.1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLSGADVALIVFSPGEKVFSFGQPNVDTVIERYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAKELNHLRKATEAQFWWVGPVDGMNRAQLEFFKKALEETKKLVAHHADRLVIQGAPTQTIPFFVGNGSSSNMPLHHQPNPPQTQMFPAQFFQNPMLQSHLFSFNNMGGGGGYGPSGFF*