AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG042708

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042708 MtrunA17_Chr8g0355091 92.405 237 18 0 1 237 1 237 4.15e-165 455
MsaG042708 MtrunA17_Chr1g0206701 90.717 237 22 0 1 237 1 237 5.15e-153 424
MsaG042708 MtrunA17_Chr1g0206721 89.041 219 24 0 1 219 1 219 3.75e-148 412
MsaG042708 MtrunA17_Chr1g0149391 89.030 237 26 0 1 237 1 237 9.74e-145 404
MsaG042708 MtrunA17_Chr2g0292791 86.076 237 33 0 1 237 1 237 4.62e-144 402
MsaG042708 MtrunA17_Chr3g0099421 84.932 219 33 0 1 219 26 244 8.19e-140 392
MsaG042708 MtrunA17_Chr1g0206691 82.727 220 38 0 18 237 1 220 2.06e-135 379
MsaG042708 MtrunA17_Chr3g0099411 78.539 219 28 1 1 219 1 200 2.72e-122 346
MsaG042708 MtrunA17_Chr5g0422941 67.511 237 77 0 1 237 1 237 4.96e-118 336
MsaG042708 MtrunA17_Chr2g0300441 70.042 237 70 1 1 237 1 236 2.10e-117 334
MsaG042708 MtrunA17_Chr3g0089141 71.915 235 48 3 1 225 1 227 5.85e-117 333
MsaG042708 MtrunA17_Chr1g0208561 71.915 235 48 3 1 225 1 227 2.90e-116 331
MsaG042708 MtrunA17_Chr2g0317451 66.949 236 78 0 1 236 1 236 2.92e-116 332
MsaG042708 MtrunA17_Chr1g0206991 85.714 182 26 0 1 182 1 182 5.08e-116 329
MsaG042708 MtrunA17_Chr2g0317481 66.949 236 78 0 1 236 1 236 8.25e-116 330
MsaG042708 MtrunA17_Chr5g0419601 70.042 237 71 0 1 237 1 237 6.49e-113 323
MsaG042708 MtrunA17_Chr1g0188671 68.889 225 70 0 1 225 39 263 6.74e-113 325
MsaG042708 MtrunA17_Chr2g0325971 70.638 235 51 3 1 225 1 227 2.51e-112 321
MsaG042708 MtrunA17_Chr1g0187361 68.889 225 70 0 1 225 1 225 3.46e-112 321
MsaG042708 MtrunA17_Chr1g0208581 69.787 235 53 3 1 225 1 227 1.74e-111 319
MsaG042708 MtrunA17_Chr5g0422421 67.556 225 73 0 1 225 1 225 6.02e-108 310
MsaG042708 MtrunA17_Chr7g0238991 64.126 223 78 2 16 237 27 248 3.91e-97 283
MsaG042708 MtrunA17_Chr2g0300421 63.804 163 58 1 1 162 1 163 1.11e-65 201
MsaG042708 MtrunA17_Chr3g0085241 49.206 189 86 1 3 191 35 213 2.19e-62 195
MsaG042708 MtrunA17_Chr3g0089151 71.212 132 38 0 1 132 1 132 6.00e-62 190
MsaG042708 MtrunA17_Chr3g0119901 50.270 185 82 1 7 191 7 181 1.57e-61 192
MsaG042708 MtrunA17_Chr3g0111931 67.647 102 33 0 21 122 2 103 3.02e-44 144
MsaG042708 MtrunA17_Chr8g0379021 41.566 166 87 2 5 167 8 166 6.02e-39 133
MsaG042708 MtrunA17_Chr2g0333981 39.181 171 94 2 5 172 8 171 1.03e-38 132
MsaG042708 MtrunA17_Chr4g0018951 43.226 155 76 3 5 159 8 150 1.24e-32 116
MsaG042708 MtrunA17_Chr1g0187351 80.303 66 13 0 18 83 1 66 4.01e-31 109
MsaG042708 MtrunA17_Chr3g0111841 86.441 59 8 0 15 73 2 60 1.30e-29 105
MsaG042708 MtrunA17_Chr4g0071601 38.122 181 92 4 5 172 8 181 1.81e-29 108
MsaG042708 MtrunA17_Chr3g0111831 72.131 61 17 0 16 76 11 71 9.44e-24 91.3
MsaG042708 MtrunA17_Chr1g0175601 44.144 111 59 2 9 118 2 110 1.44e-22 90.9
MsaG042708 MtrunA17_Chr1g0169761 57.971 69 29 0 9 77 2 70 7.72e-22 89.0
MsaG042708 MtrunA17_Chr8g0376821 57.971 69 29 0 9 77 2 70 1.49e-21 88.2
MsaG042708 MtrunA17_Chr4g0074101 38.793 116 56 3 9 109 2 117 3.79e-21 87.4
MsaG042708 MtrunA17_Chr1g0180591 43.750 112 58 3 9 118 2 110 6.72e-21 86.3
MsaG042708 MtrunA17_Chr1g0175611 43.564 101 55 1 9 109 2 100 7.13e-21 86.3
MsaG042708 MtrunA17_Chr8g0357771 43.564 101 55 1 9 109 2 100 1.23e-20 85.9
MsaG042708 MtrunA17_Chr8g0356071 43.299 97 50 1 9 105 2 93 2.29e-19 82.0
MsaG042708 MtrunA17_Chr4g0052061 39.623 106 62 1 9 114 2 105 1.87e-18 79.3
MsaG042708 MtrunA17_Chr4g0049901 32.948 173 89 4 10 161 29 195 2.17e-18 81.3
MsaG042708 MtrunA17_Chr3g0097101 41.509 106 52 1 3 108 11 106 1.45e-17 79.0
MsaG042708 MtrunA17_Chr4g0057151 52.055 73 35 0 10 82 3 75 1.69e-17 78.2
MsaG042708 MtrunA17_Chr4g0052081 40.566 106 62 1 9 113 2 107 3.13e-17 76.6
MsaG042708 MtrunA17_Chr3g0077501 51.471 68 33 0 9 76 2 69 3.83e-17 77.4
MsaG042708 MtrunA17_Chr8g0351051 34.132 167 96 4 9 167 2 162 4.03e-17 77.8
MsaG042708 MtrunA17_Chr6g0474371 50.725 69 33 1 9 76 2 70 9.89e-17 75.9
MsaG042708 MtrunA17_Chr3g0134451 43.269 104 56 3 9 111 2 103 2.20e-16 76.6
MsaG042708 MtrunA17_Chr8g0380021 52.941 68 32 0 9 76 18 85 2.42e-16 75.5
MsaG042708 MtrunA17_Chr5g0412271 29.858 211 129 6 9 201 2 211 2.64e-16 75.1
MsaG042708 MtrunA17_Chr2g0284911 29.730 185 101 4 9 167 17 198 2.76e-16 75.9
MsaG042708 MtrunA17_Chr8g0351041 48.718 78 40 0 10 87 3 80 2.87e-16 73.6
MsaG042708 MtrunA17_Chr5g0412461 28.972 214 126 7 9 201 2 210 3.56e-16 74.7
MsaG042708 MtrunA17_Chr4g0061691 49.275 69 34 1 9 76 2 70 6.67e-16 74.3
MsaG042708 MtrunA17_Chr2g0279821 50.000 68 34 0 9 76 2 69 8.63e-16 73.9
MsaG042708 MtrunA17_Chr5g0427401 48.529 68 35 0 9 76 2 69 8.87e-16 73.9
MsaG042708 MtrunA17_Chr1g0204111 51.471 68 33 0 9 76 18 85 9.37e-16 74.3
MsaG042708 MtrunA17_Chr7g0246431 39.091 110 65 1 10 119 3 110 1.13e-15 73.2
MsaG042708 MtrunA17_Chr8g0351031 48.718 78 40 0 10 87 3 80 1.72e-15 72.8
MsaG042708 MtrunA17_Chr8g0366231 42.169 83 45 1 9 91 2 81 6.58e-15 71.6
MsaG042708 MtrunA17_Chr4g0049541 48.529 68 35 0 9 76 2 69 7.68e-15 71.2
MsaG042708 MtrunA17_Chr4g0020221 42.683 82 47 0 9 90 2 83 1.02e-14 71.2
MsaG042708 MtrunA17_Chr7g0220121 26.761 213 142 5 9 207 2 214 1.09e-14 71.2
MsaG042708 MtrunA17_Chr5g0420081 46.479 71 35 1 9 79 2 69 1.56e-14 70.5
MsaG042708 MtrunA17_Chr8g0345001 32.278 158 94 3 8 159 17 167 1.78e-14 69.3
MsaG042708 MtrunA17_Chr5g0411691 47.059 68 36 0 9 76 2 69 2.75e-14 70.1
MsaG042708 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 3.47e-14 66.6
MsaG042708 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 3.84e-14 65.9
MsaG042708 MtrunA17_Chr3g0093131 33.566 143 78 4 26 159 36 170 4.07e-14 68.6
MsaG042708 MtrunA17_Chr5g0420091 49.275 69 34 1 9 76 2 70 4.62e-14 68.9
MsaG042708 MtrunA17_Chr6g0455511 47.826 69 35 1 9 76 2 70 8.42e-14 68.6
MsaG042708 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 9.04e-14 65.1
MsaG042708 MtrunA17_Chr7g0220111 47.826 69 35 1 9 76 2 70 9.66e-14 68.6
MsaG042708 MtrunA17_Chr1g0164791 48.571 70 34 1 9 76 2 71 1.15e-13 68.2
MsaG042708 MtrunA17_Chr5g0404951 35.897 117 65 2 9 125 2 108 1.20e-13 68.2
MsaG042708 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 1.29e-13 65.5
MsaG042708 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.54e-13 64.7
MsaG042708 MtrunA17_Chr3g0122251 41.237 97 54 1 9 105 2 95 2.65e-13 67.4
MsaG042708 MtrunA17_Chr1g0159661 44.286 70 37 1 9 76 2 71 4.65e-13 65.5
MsaG042708 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 5.78e-13 65.5
MsaG042708 MtrunA17_Chr7g0246381 52.632 57 27 0 9 65 2 58 8.99e-13 62.0
MsaG042708 MtrunA17_Chr5g0427921 47.368 57 30 0 9 65 2 58 1.37e-12 60.8
MsaG042708 MtrunA17_Chr4g0025531 30.864 162 96 4 5 164 5 152 2.68e-12 64.3
MsaG042708 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 3.19e-12 63.9
MsaG042708 MtrunA17_Chr3g0125241 42.857 70 38 1 9 76 27 96 3.35e-12 63.5
MsaG042708 MtrunA17_Chr5g0417661 40.580 69 35 1 9 77 57 119 4.78e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042708 AT5G60440.1 53.723 188 80 3 5 189 3 186 6.57e-60 191
MsaG042708 AT2G24840.1 48.780 164 73 4 6 163 60 218 1.79e-41 142
MsaG042708 AT4G36590.1 46.914 162 80 2 5 160 3 164 1.93e-39 137
MsaG042708 AT1G01530.1 41.667 192 100 4 4 192 2 184 1.38e-38 134
MsaG042708 AT1G65360.1 38.326 227 125 6 5 225 3 220 1.57e-37 131
MsaG042708 AT2G34440.1 41.985 131 66 3 9 134 2 127 3.57e-25 97.8
MsaG042708 AT3G66656.1 40.157 127 72 1 9 131 2 128 2.91e-24 95.5
MsaG042708 AT3G04100.1 32.237 152 99 3 2 149 7 158 1.09e-22 92.4
MsaG042708 AT1G72350.1 54.795 73 31 1 9 81 43 113 4.59e-20 85.9
MsaG042708 AT1G28460.1 31.792 173 108 3 5 174 4 169 1.05e-19 83.6
MsaG042708 AT4G09960.2 47.674 86 44 1 9 93 2 87 1.83e-18 81.3
MsaG042708 AT4G09960.1 47.674 86 44 1 9 93 2 87 2.31e-18 81.3
MsaG042708 AT4G09960.6 47.674 86 44 1 9 93 3 88 2.48e-18 81.3
MsaG042708 AT1G29962.1 30.233 172 113 4 5 169 4 175 3.17e-18 79.7
MsaG042708 AT4G09960.5 47.674 86 44 1 9 93 12 97 3.37e-18 80.9
MsaG042708 AT4G09960.3 47.674 86 44 1 9 93 28 113 4.58e-18 80.9
MsaG042708 AT2G45650.1 54.412 68 31 0 9 76 2 69 6.27e-18 80.5
MsaG042708 AT4G22950.2 48.684 76 39 0 10 85 3 78 8.68e-18 78.6
MsaG042708 AT4G09960.4 47.674 86 44 1 9 93 97 182 1.38e-17 80.9
MsaG042708 AT4G22950.3 48.684 76 39 0 10 85 3 78 3.59e-17 77.8
MsaG042708 AT4G22950.1 48.684 76 39 0 10 85 3 78 3.59e-17 77.8
MsaG042708 AT2G22540.3 38.462 143 68 5 9 137 2 138 8.06e-17 77.4
MsaG042708 AT2G22540.1 38.462 143 68 5 9 137 2 138 8.06e-17 77.4
MsaG042708 AT4G18960.1 43.269 104 48 2 5 108 15 107 9.37e-17 77.4
MsaG042708 AT2G45660.2 51.471 68 33 0 10 77 3 70 1.45e-16 74.7
MsaG042708 AT4G24540.1 37.162 148 76 5 9 156 2 132 2.91e-16 75.5
MsaG042708 AT2G45660.1 51.471 68 33 0 10 77 3 70 3.84e-16 75.1
MsaG042708 AT3G57230.2 48.529 68 35 0 9 76 2 69 3.84e-16 73.2
MsaG042708 AT3G61120.1 52.941 68 32 0 9 76 2 69 3.92e-16 75.5
MsaG042708 AT5G62165.14 50.746 67 33 0 10 76 3 69 6.59e-16 71.6
MsaG042708 AT2G42830.1 49.296 71 36 0 6 76 14 84 1.05e-15 74.3
MsaG042708 AT3G58780.1 49.296 71 36 0 6 76 14 84 1.11e-15 74.3
MsaG042708 AT1G22130.1 37.143 105 65 1 9 112 2 106 1.17e-15 75.5
MsaG042708 AT2G42830.2 49.296 71 36 0 6 76 14 84 1.18e-15 74.3
MsaG042708 AT3G58780.5 49.296 71 36 0 6 76 20 90 1.20e-15 74.3
MsaG042708 AT5G62165.6 50.746 67 33 0 10 76 3 69 1.27e-15 72.0
MsaG042708 AT5G62165.9 50.746 67 33 0 10 76 3 69 1.27e-15 72.0
MsaG042708 AT5G62165.7 50.746 67 33 0 10 76 3 69 1.27e-15 72.0
MsaG042708 AT5G62165.8 50.746 67 33 0 10 76 3 69 1.27e-15 72.0
MsaG042708 AT5G62165.13 50.746 67 33 0 10 76 3 69 1.27e-15 72.0
MsaG042708 AT5G62165.17 50.746 67 33 0 10 76 3 69 1.46e-15 72.0
MsaG042708 AT5G62165.12 50.746 67 33 0 10 76 3 69 1.46e-15 72.0
MsaG042708 AT5G62165.11 50.746 67 33 0 10 76 3 69 1.46e-15 72.0
MsaG042708 AT3G57230.1 48.529 68 35 0 9 76 2 69 1.62e-15 73.6
MsaG042708 AT3G57230.4 48.529 68 35 0 9 76 2 69 1.62e-15 73.6
MsaG042708 AT3G58780.4 49.296 71 36 0 6 76 14 84 1.64e-15 74.3
MsaG042708 AT1G77950.3 46.053 76 39 2 9 83 2 76 1.88e-15 73.6
MsaG042708 AT1G77950.2 46.053 76 39 2 9 83 2 76 1.88e-15 73.6
MsaG042708 AT1G77950.1 46.053 76 39 2 9 83 2 76 1.88e-15 73.6
MsaG042708 AT1G77950.4 46.053 76 39 2 9 83 2 76 1.88e-15 73.6
MsaG042708 AT3G57390.3 50.000 68 34 0 9 76 2 69 2.49e-15 72.8
MsaG042708 AT1G77980.1 37.143 105 65 1 9 112 2 106 2.72e-15 74.3
MsaG042708 AT5G51870.2 52.239 67 32 0 10 76 3 69 3.16e-15 71.6
MsaG042708 AT4G11880.2 50.000 72 35 1 10 80 3 74 3.25e-15 71.6
MsaG042708 AT4G11880.3 50.000 72 35 1 10 80 3 74 3.25e-15 71.6
MsaG042708 AT2G22630.1 48.529 68 35 0 9 76 2 69 3.38e-15 72.8
MsaG042708 AT2G22630.2 48.529 68 35 0 9 76 2 69 3.38e-15 72.8
MsaG042708 AT5G60910.1 50.704 71 32 1 9 79 2 69 3.74e-15 72.8
MsaG042708 AT3G57390.1 50.000 68 34 0 9 76 2 69 4.42e-15 72.8
MsaG042708 AT5G62165.10 50.746 67 33 0 10 76 3 69 4.54e-15 71.6
MsaG042708 AT5G62165.4 50.746 67 33 0 10 76 3 69 4.54e-15 71.6
MsaG042708 AT5G51870.1 52.239 67 32 0 10 76 3 69 4.97e-15 71.6
MsaG042708 AT5G51870.5 48.611 72 37 0 5 76 21 92 5.19e-15 71.6
MsaG042708 AT5G62165.3 50.746 67 33 0 10 76 3 69 5.45e-15 71.6
MsaG042708 AT5G62165.1 50.746 67 33 0 10 76 3 69 5.45e-15 71.6
MsaG042708 AT5G62165.2 50.746 67 33 0 10 76 3 69 5.45e-15 71.6
MsaG042708 AT5G13790.2 43.011 93 44 1 9 101 2 85 5.51e-15 72.8
MsaG042708 AT1G17310.1 51.899 79 36 1 8 86 47 123 6.24e-15 71.6
MsaG042708 AT5G13790.1 51.471 68 33 0 9 76 2 69 6.24e-15 72.4
MsaG042708 AT1G26310.1 49.275 69 34 1 9 76 2 70 6.78e-15 72.4
MsaG042708 AT4G11880.4 50.000 72 35 1 10 80 3 74 7.28e-15 71.6
MsaG042708 AT4G11880.1 50.000 72 35 1 10 80 3 74 7.28e-15 71.6
MsaG042708 AT1G17310.2 51.899 79 36 1 8 86 58 134 7.40e-15 71.6
MsaG042708 AT1G69120.2 39.560 91 52 1 9 99 2 89 8.59e-15 71.6
MsaG042708 AT5G51870.4 52.239 67 32 0 10 76 3 69 8.73e-15 71.2
MsaG042708 AT5G51870.3 52.239 67 32 0 10 76 13 79 9.97e-15 71.2
MsaG042708 AT5G51860.2 50.746 67 33 0 10 76 3 69 1.20e-14 70.5
MsaG042708 AT5G51860.1 50.746 67 33 0 10 76 3 69 1.34e-14 70.5
MsaG042708 AT4G37940.4 47.059 68 36 0 9 76 2 69 1.35e-14 70.9
MsaG042708 AT4G37940.3 47.059 68 36 0 9 76 2 69 1.46e-14 69.7
MsaG042708 AT1G69120.1 39.560 91 52 1 9 99 2 89 1.50e-14 71.2
MsaG042708 AT4G37940.1 47.059 68 36 0 9 76 2 69 1.63e-14 70.9
MsaG042708 AT5G10140.2 47.826 69 35 1 9 76 2 70 1.64e-14 69.3
MsaG042708 AT5G10140.4 47.826 69 35 1 9 76 2 70 2.34e-14 69.3
MsaG042708 AT5G10140.1 47.826 69 35 1 9 76 2 70 2.67e-14 69.7
MsaG042708 AT5G10140.3 47.826 69 35 1 9 76 2 70 2.68e-14 69.3
MsaG042708 AT2G22540.2 37.762 143 64 6 9 137 2 133 2.91e-14 70.1
MsaG042708 AT2G14210.1 47.826 69 35 1 9 76 2 70 5.63e-14 69.3
MsaG042708 AT2G14210.2 47.826 69 35 1 9 76 2 70 6.37e-14 69.3
MsaG042708 AT1G28450.1 29.371 143 95 3 5 141 4 146 7.08e-14 68.2
MsaG042708 AT3G02310.2 49.275 69 34 1 9 76 2 70 9.77e-14 68.2
MsaG042708 AT3G54340.1 49.206 63 32 0 9 71 2 64 1.02e-13 68.6
MsaG042708 AT3G30260.1 28.485 165 100 4 9 172 2 149 1.03e-13 68.9
MsaG042708 AT5G20240.2 50.000 62 31 0 9 70 2 63 1.15e-13 66.6
MsaG042708 AT5G23260.4 43.299 97 47 3 2 90 9 105 1.55e-13 68.6
MsaG042708 AT5G23260.1 43.299 97 47 3 2 90 9 105 1.71e-13 68.6
MsaG042708 AT5G15800.1 47.826 69 35 1 9 76 2 70 1.99e-13 68.2
MsaG042708 AT3G02310.1 49.275 69 34 1 9 76 2 70 2.33e-13 67.8
MsaG042708 AT5G23260.3 44.318 88 43 2 9 90 2 89 2.74e-13 67.4
MsaG042708 AT5G23260.2 44.318 88 43 2 9 90 2 89 2.88e-13 67.8
MsaG042708 AT5G15800.2 47.826 69 35 1 9 76 2 70 2.88e-13 67.8
MsaG042708 AT5G20240.1 50.000 62 31 0 9 70 2 63 3.81e-13 66.6
MsaG042708 AT1G24260.3 41.237 97 54 1 9 105 2 95 6.30e-13 66.6
MsaG042708 AT1G24260.1 47.826 69 35 1 9 76 2 70 6.60e-13 66.6
MsaG042708 AT1G24260.2 47.826 69 35 1 9 76 2 70 6.60e-13 66.6
MsaG042708 AT3G58780.2 50.000 60 30 0 6 65 14 73 7.92e-13 66.2
MsaG042708 AT1G47760.1 34.483 116 61 3 9 123 2 103 8.03e-13 65.1
MsaG042708 AT3G58780.3 50.000 60 30 0 6 65 14 73 9.67e-13 66.6
MsaG042708 AT2G03710.3 51.786 56 27 0 9 64 2 57 1.07e-12 65.1
MsaG042708 AT2G03710.2 51.786 56 27 0 9 64 2 57 2.88e-12 65.1
MsaG042708 AT2G03710.1 51.786 56 27 0 9 64 2 57 3.03e-12 64.7
MsaG042708 AT5G65050.2 43.478 69 38 1 9 76 2 70 5.97e-12 62.8
MsaG042708 AT5G65070.4 42.029 69 39 1 9 76 2 70 6.37e-12 62.0
MsaG042708 AT5G65050.5 43.478 69 38 1 9 76 2 70 8.73e-12 62.4
MsaG042708 AT5G65050.3 43.478 69 38 1 9 76 2 70 9.04e-12 62.8
MsaG042708 AT5G65050.1 43.478 69 38 1 9 76 2 70 9.28e-12 62.4
MsaG042708 AT1G46408.1 36.975 119 66 4 10 119 5 123 1.26e-11 63.2
MsaG042708 AT5G65070.1 42.029 69 39 1 9 76 2 70 1.52e-11 62.0
MsaG042708 AT5G65070.5 42.029 69 39 1 9 76 2 70 2.18e-11 61.6
MsaG042708 AT5G65070.2 42.029 69 39 1 9 76 2 70 2.49e-11 62.0
MsaG042708 AT1G71692.1 40.000 70 41 1 9 77 2 71 2.56e-11 61.6
MsaG042708 AT5G65060.3 42.029 69 39 1 9 76 2 70 3.71e-11 60.8
MsaG042708 AT5G65060.2 42.029 69 39 1 9 76 2 70 3.85e-11 60.5
MsaG042708 AT5G65060.1 42.029 69 39 1 9 76 2 70 4.79e-11 60.5

Find 53 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTAGTTTCAACAATA+TGG 0.214738 8:-26188411 MsaT042708.1:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 8:+26188476 None:intergenic
TGGTGGGTTGGTCCCGTTGA+TGG 0.316276 8:-26188662 MsaT042708.1:CDS
AGGCGACCGAGGCTCAATTT+TGG 0.319875 8:-26188682 MsaT042708.1:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 8:+26188819 None:intergenic
TGCTGATAGGCTTGTTATCC+AGG 0.360030 8:-26188570 MsaT042708.1:CDS
TTGTTTAGTTTCAACAATAT+GGG 0.373512 8:-26188410 MsaT042708.1:CDS
CCTCGGTCGCCTTGCGTAAG+TGG 0.412707 8:+26188693 None:intergenic
TCTTCTCCATGTCTAGTAGC+TGG 0.428165 8:+26188735 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 8:-26188652 MsaT042708.1:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 8:+26188486 None:intergenic
TTTGGAGGAGACTAAGAAAC+TGG 0.447124 8:-26188603 MsaT042708.1:CDS
GGTGGGTTGGTCCCGTTGAT+GGG 0.452333 8:-26188661 MsaT042708.1:CDS
TGGTTGCACATCATGCTGAT+AGG 0.453644 8:-26188583 MsaT042708.1:CDS
TCCCGTTGATGGGATGAATA+GGG 0.472863 8:-26188651 MsaT042708.1:CDS
CTCTATGACTGTATCAACAT+TGG 0.473205 8:+26188865 None:intergenic
AACAAATGAGATTGCAACAT+AGG 0.480998 8:+26188428 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 8:+26188650 None:intergenic
GCTGGAAACATTTGAGTTTG+CGG 0.497653 8:+26188467 None:intergenic
ATGATGGAGAGGCATGTTAG+AGG 0.501643 8:+26188502 None:intergenic
TCTATGACTGTATCAACATT+GGG 0.506825 8:+26188866 None:intergenic
TGTTTAGTTTCAACAATATG+GGG 0.522195 8:-26188409 MsaT042708.1:CDS
ACTGAGAGTGCAAAGCTCAC+TGG 0.526727 8:+26188949 None:intergenic
AGTATTGAGCTCGCGCACGT+TGG 0.531885 8:+26188775 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 8:+26188783 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 8:+26188649 None:intergenic
GGGCTCGGATCAAAAGAATC+CGG 0.538178 8:+26188364 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 8:-26188985 MsaT042708.1:CDS
ACAAATGAGATTGCAACATA+GGG 0.555620 8:+26188429 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 8:-26188383 MsaT042708.1:CDS
ATTCAACCATGTCGAGTGGA+AGG 0.567884 8:-26189072 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 8:-26188986 MsaT042708.1:CDS
CCACTTACGCAAGGCGACCG+AGG 0.585405 8:-26188693 MsaT042708.1:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 8:+26188896 None:intergenic
GCTGATAGGCTTGTTATCCA+GGG 0.594644 8:-26188569 MsaT042708.1:CDS
AACCCACCAAAATTGAGCCT+CGG 0.597830 8:+26188676 None:intergenic
TGACTGTATCAACATTGGGT+TGG 0.602923 8:+26188870 None:intergenic
GATCAACCAGCTACTAGACA+TGG 0.605381 8:-26188741 MsaT042708.1:CDS
AGTGAGCTTTGCACTCTCAG+TGG 0.609659 8:-26188947 MsaT042708.1:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 8:+26188972 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 8:+26188491 None:intergenic
GTTTAGTTTCAACAATATGG+GGG 0.615633 8:-26188408 MsaT042708.1:CDS
TTTAGTTTCAACAATATGGG+GGG 0.617072 8:-26188407 MsaT042708.1:CDS
TGTGATTCAACCATGTCGAG+TGG 0.620546 8:-26189076 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.630101 8:+26188552 None:intergenic
TGGTACCATGCAATTCATTG+AGG 0.638950 8:-26188810 MsaT042708.1:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 8:-26188830 MsaT042708.1:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 8:+26188805 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 8:+26188470 None:intergenic
AGAGCTGAACCACTTACGCA+AGG 0.653927 8:-26188702 MsaT042708.1:CDS
CTCGGATCAAAAGAATCCGG+AGG 0.655674 8:+26188367 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.678771 8:+26188368 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 8:-26189061 MsaT042708.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 26188373 26189086 26188373 ID=MsaG042708
Chr8 mRNA 26188373 26189086 26188373 ID=MsaT042708.1;Parent=MsaG042708
Chr8 exon 26188373 26189086 26188373 ID=MsaT042708.1.exon1;Parent=MsaT042708.1
Chr8 CDS 26188373 26189086 26188373 ID=cds.MsaT042708.1;Parent=MsaT042708.1
Gene Sequence

>MsaT042708.1

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCAGTGGTGCAGATGTTGCTCTCATTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACAGTCATAGAGCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTAGACATGGAGAAGAAACGTGCTAAAGAGCTGAACCACTTACGCAAGGCGACCGAGGCTCAATTTTGGTGGGTTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGACTAAGAAACTGGTTGCACATCATGCTGATAGGCTTGTTATCCAGGGTGCTCCTACTCAAACCATTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAGCACAGTTTTTTCAGAACCCTATGTTGCAATCTCATTTGTTTAGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MsaT042708.1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLSGADVALIVFSPGEKVFSFGQPNVDTVIERYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAKELNHLRKATEAQFWWVGPVDGMNRAQLEFFKKALEETKKLVAHHADRLVIQGAPTQTIPFFVGNGSSSNMPLHHQPNPPQTQMFPAQFFQNPMLQSHLFSFNNMGGGGGYGPSGFF*