AlfalfaGEDB | MsaG042710

M. sativa ssp. caerulea / MsaG042710

KEGG: K14432
GO: -
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042710	XP_003628123.1	92.857	322	14	1	1	322	1	313	0.0	591

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042710	sp\|Q9LES3\|AI5L2_ARATH	53.055	311	107	8	23	322	15	297	5.37e-89	271

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042710	tr\|G7L6Z1\|G7L6Z1_MEDTR	92.857	322	14	1	1	322	1	313	0.0	591

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TFs/TRs:

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Gene ID	Type	Classification
MsaG042710	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000605	MsaG042710	0.815331	1.690706e-51	3.295756e-49
MsaG001371	MsaG042710	0.815494	1.555441e-51	3.044579e-49
MsaG001878	MsaG042710	0.846429	4.111482e-59	1.975073e-56
MsaG002225	MsaG042710	0.817941	4.425193e-52	9.222389e-50
MsaG003384	MsaG042710	0.832191	1.967378e-55	6.065745e-53
MsaG004324	MsaG042710	0.808337	5.542038e-50	9.092018e-48
MsaG004514	MsaG042710	0.841901	6.663453e-58	2.762443e-55
MsaG004656	MsaG042710	0.828527	1.531564e-54	4.250852e-52
MsaG004918	MsaG042710	0.817992	4.309644e-52	8.993495e-50
MsaG005601	MsaG042710	0.813076	5.291878e-51	9.747525e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042710	MtrunA17_Chr8g0355121	92.857	322	14	1	1	322	1	313	0.0	591
MsaG042710	MtrunA17_Chr3g0080341	64.087	323	109	4	6	322	1	322	5.80e-143	406
MsaG042710	MtrunA17_Chr7g0254991	47.006	334	146	8	6	322	1	320	1.48e-86	263
MsaG042710	MtrunA17_Chr6g0460301	49.398	332	142	7	6	322	1	321	3.05e-83	254
MsaG042710	MtrunA17_Chr4g0044771	36.337	344	144	13	23	301	17	350	2.59e-42	150
MsaG042710	MtrunA17_Chr5g0440841	54.967	151	61	3	1	148	1	147	6.15e-35	128
MsaG042710	MtrunA17_Chr5g0440841	61.364	88	33	1	235	322	183	269	3.08e-24	99.8
MsaG042710	MtrunA17_Chr7g0266211	34.682	346	143	11	30	294	45	388	4.77e-34	129
MsaG042710	MtrunA17_Chr2g0321411	35.587	281	130	12	27	294	11	253	3.69e-30	115
MsaG042710	MtrunA17_Chr2g0321381	37.589	282	142	10	26	294	24	284	4.76e-30	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042710	AT3G56850.1	53.055	311	107	8	23	322	15	297	5.46e-90	271
MsaG042710	AT2G41070.3	49.007	302	94	9	23	320	15	260	1.06e-74	231
MsaG042710	AT2G41070.1	49.007	302	94	9	23	320	15	260	1.06e-74	231
MsaG042710	AT2G41070.2	49.007	302	94	9	23	320	15	260	1.06e-74	231
MsaG042710	AT2G41070.4	49.007	302	94	9	23	320	24	269	1.41e-74	231
MsaG042710	AT2G41070.5	49.281	278	81	9	23	296	15	236	5.14e-66	208
MsaG042710	AT2G36270.1	33.092	414	156	15	23	322	36	442	5.37e-38	140
MsaG042710	AT2G36270.2	33.092	414	156	15	23	322	36	442	5.37e-38	140
MsaG042710	AT2G36270.3	33.508	382	140	12	23	297	36	410	8.58e-37	137
MsaG042710	AT1G49720.1	43.407	182	83	5	1	167	1	177	1.38e-31	122

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Find 82 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAATTAGGTGACTTA+GGG	0.436185	8:+26253352	MsaT042710.1:CDS
AAATGGGAACTCAGACAATG+GGG	0.712282	8:+26253235	None:intergenic
AAGAGGAAAATGAAATGCTG+AGG	0.635284	8:+26254200	MsaT042710.1:CDS
AAGGATCACTCCAGAGGATA+TGG	0.352037	8:+26253950	MsaT042710.1:CDS
ACAATGGGGTCTCAAGGTGG+TGG	0.565619	8:+26253249	MsaT042710.1:CDS
ACACCAGACCCCATGTGTAA+CGG	0.609930	8:-26253837	None:intergenic
ACCTCTTATGGGAACTGTGT+CGG	0.579301	8:+26253905	MsaT042710.1:CDS
ACTCAGACAATGGGGTCTCA+AGG	0.525496	8:+26253243	MsaT042710.1:CDS
AGAAAAGGATGATCAAGAAT+CGG	0.457820	8:+26253997	MsaT042710.1:CDS
AGAGGACTGTGGATGAGGTT+TGG	0.422682	8:+26253532	MsaT042710.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	26253237	26255136	26253237	ID=MsaG042710
Chr8	mRNA	26253237	26255136	26253237	ID=MsaT042710.1;Parent=MsaG042710
Chr8	exon	26253237	26254052	26253237	ID=MsaT042710.1.exon1;Parent=MsaT042710.1
Chr8	CDS	26253237	26254052	26253237	ID=cds.MsaT042710.1;Parent=MsaT042710.1
Chr8	exon	26254160	26254231	26254160	ID=MsaT042710.1.exon2;Parent=MsaT042710.1
Chr8	CDS	26254160	26254231	26254160	ID=cds.MsaT042710.1;Parent=MsaT042710.1
Chr8	exon	26255056	26255136	26255056	ID=MsaT042710.1.exon3;Parent=MsaT042710.1
Chr8	CDS	26255056	26255136	26255056	ID=cds.MsaT042710.1;Parent=MsaT042710.1

Gene Sequence

>MsaT042710.1

ATGGGAACTCAGACAATGGGGTCTCAAGGTGGTGGAGATGGTAGTGGAAGACGGTCACAACTCCACTCTCTTGTGAGGCAAAATTCAGTGTACAGTCTCACACTAGATGAAGTTCAAAATCAATTAGGTGACTTAGGGAAGCCACTAAGCAGTATGAACCTAGACGAGCTTCTGAAAAATGTATGGACTGTTGAAGTGAACCAGTCCACGAATACGGACAATGAAGGCACAACGCAATCTAGTGAAGCTTCTCTACAACGTCAAGCTAGTCTGGCATTAAAAGCTGCATTCAGCAAGAGGACTGTGGATGAGGTTTGGAGAGATATCCAACAAAAGAAAGACAACGAGGAAAAGAAGTCACGAGAGAGACAAACTACTTTAGGAGAGATGACATTGGAGGATTTCTTGGTGAAAGCAGGTATTGTTGCAGAAGCATCTTCTAATAAAAAGAATACTGATACTACGGCTGCGGCCGATTCAAATGTGGCAGTATCACAGTTTCCTCTGCAGGGTCAGTGGTTACAGTATCCGCAACCACAATATCAGCATCTACAACAAAGTTCCATGGGGATTTATATGCCTAGCCAGGGTATAGCACAGCCGTTACACATGGGGTCTGGTGTTTCGATGGAGATTCCGTTTGCAGATAGTCATATGGCATTGGGTGCACCTCTTATGGGAACTGTGTCGGATACGCAGATGCCTGGAAGAAAAAGGATCACTCCAGAGGATATGGTGGAGAAGACTGTTGAGAGAAGGCAGAAAAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCAAGAGCACGGAAACAGGCTTACACAAATGAATTGGAGATTAAAGTTTCACGCCTGGAAGAGGAAAATGAAATGCTGAGGAAACGAAAGGAGCTAGAGAGTATGTTGCCATGTACACCAATTGCTGAACCTAAATATCAGCTACGTCGAATAGCATCTTGTCCATTCTGA

Protein sequence

>MsaT042710.1

MGTQTMGSQGGGDGSGRRSQLHSLVRQNSVYSLTLDEVQNQLGDLGKPLSSMNLDELLKNVWTVEVNQSTNTDNEGTTQSSEASLQRQASLALKAAFSKRTVDEVWRDIQQKKDNEEKKSRERQTTLGEMTLEDFLVKAGIVAEASSNKKNTDTTAAADSNVAVSQFPLQGQWLQYPQPQYQHLQQSSMGIYMPSQGIAQPLHMGSGVSMEIPFADSHMALGAPLMGTVSDTQMPGRKRITPEDMVEKTVERRQKRMIKNRESAARSRARKQAYTNELEIKVSRLEEENEMLRKRKELESMLPCTPIAEPKYQLRRIASCPF*