Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042713 | XP_024628686.1 | 88.966 | 145 | 16 | 0 | 22 | 166 | 5 | 149 | 1.26e-77 | 275 |
MsaG042713 | XP_024628686.1 | 89.613 | 491 | 39 | 5 | 156 | 645 | 341 | 820 | 0.0 | 860 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042713 | sp|Q9ZVC9|FRS3_ARATH | 49.585 | 482 | 225 | 8 | 168 | 645 | 367 | 834 | 7.26e-155 | 470 |
MsaG042713 | sp|Q9ZVC9|FRS3_ARATH | 41.270 | 126 | 70 | 3 | 20 | 142 | 32 | 156 | 3.14e-15 | 83.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042713 | tr|A0A1S2YWR7|A0A1S2YWR7_CICAR | 60.335 | 179 | 54 | 2 | 2 | 163 | 1 | 179 | 8.65e-55 | 211 |
MsaG042713 | tr|A0A1S2YWR7|A0A1S2YWR7_CICAR | 69.520 | 479 | 136 | 3 | 167 | 645 | 386 | 854 | 0.0 | 679 |
Gene ID | Type | Classification |
---|---|---|
MsaG042713 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042713 | MtrunA17_Chr3g0118611 | 52.905 | 482 | 210 | 7 | 168 | 645 | 289 | 757 | 1.10e-169 | 503 |
MsaG042713 | MtrunA17_Chr5g0440451 | 44.549 | 532 | 236 | 8 | 168 | 645 | 392 | 918 | 3.60e-145 | 445 |
MsaG042713 | MtrunA17_Chr5g0440451 | 44.697 | 132 | 63 | 4 | 25 | 146 | 25 | 156 | 4.94e-21 | 98.2 |
MsaG042713 | MtrunA17_Chr5g0448761 | 46.795 | 312 | 159 | 3 | 168 | 474 | 411 | 720 | 5.79e-90 | 296 |
MsaG042713 | MtrunA17_Chr5g0448511 | 48.936 | 282 | 135 | 4 | 170 | 445 | 185 | 463 | 5.54e-87 | 282 |
MsaG042713 | MtrunA17_Chr1g0202341 | 35.316 | 269 | 166 | 3 | 170 | 432 | 397 | 663 | 5.10e-48 | 179 |
MsaG042713 | MtrunA17_Chr3g0080351 | 33.673 | 294 | 184 | 4 | 171 | 461 | 413 | 698 | 1.67e-47 | 179 |
MsaG042713 | MtrunA17_Chr2g0329031 | 34.035 | 285 | 178 | 4 | 171 | 452 | 352 | 629 | 3.51e-47 | 177 |
MsaG042713 | MtrunA17_Chr1g0207551 | 35.273 | 275 | 157 | 6 | 171 | 436 | 379 | 641 | 1.21e-42 | 164 |
MsaG042713 | MtrunA17_Chr2g0287061 | 35.636 | 275 | 165 | 5 | 167 | 436 | 488 | 755 | 1.66e-42 | 164 |
MsaG042713 | MtrunA17_Chr2g0291581 | 30.903 | 288 | 178 | 5 | 170 | 442 | 402 | 683 | 2.50e-37 | 148 |
MsaG042713 | MtrunA17_Chr5g0441581 | 31.579 | 285 | 181 | 6 | 173 | 449 | 369 | 647 | 3.44e-37 | 147 |
MsaG042713 | MtrunA17_Chr1g0203721 | 30.935 | 278 | 180 | 4 | 171 | 441 | 413 | 685 | 3.38e-33 | 136 |
MsaG042713 | MtrunA17_Chr6g0477261 | 27.742 | 310 | 205 | 6 | 172 | 474 | 229 | 526 | 1.30e-32 | 133 |
MsaG042713 | MtrunA17_Chr3g0082121 | 31.900 | 279 | 171 | 8 | 172 | 441 | 384 | 652 | 5.15e-32 | 132 |
MsaG042713 | MtrunA17_Chr2g0296781 | 27.419 | 310 | 206 | 6 | 172 | 474 | 340 | 637 | 1.07e-30 | 128 |
MsaG042713 | MtrunA17_Chr6g0458391 | 33.641 | 217 | 138 | 2 | 168 | 381 | 552 | 765 | 9.28e-30 | 125 |
MsaG042713 | MtrunA17_Chr1g0196541 | 30.415 | 217 | 144 | 4 | 172 | 381 | 340 | 556 | 6.62e-28 | 119 |
MsaG042713 | MtrunA17_Chr2g0294841 | 28.025 | 314 | 203 | 8 | 158 | 458 | 388 | 691 | 2.19e-27 | 117 |
MsaG042713 | MtrunA17_Chr8g0363841 | 29.661 | 236 | 155 | 6 | 166 | 395 | 359 | 589 | 1.16e-26 | 115 |
MsaG042713 | MtrunA17_Chr2g0308841 | 27.092 | 251 | 139 | 7 | 170 | 392 | 14 | 248 | 1.26e-25 | 106 |
MsaG042713 | MtrunA17_Chr2g0276841 | 27.018 | 285 | 188 | 5 | 158 | 433 | 410 | 683 | 4.42e-25 | 110 |
MsaG042713 | MtrunA17_Chr2g0287651 | 30.268 | 261 | 153 | 7 | 171 | 412 | 420 | 670 | 5.41e-24 | 107 |
MsaG042713 | MtrunA17_Chr1g0203051 | 29.778 | 225 | 151 | 5 | 150 | 369 | 400 | 622 | 5.47e-24 | 107 |
MsaG042713 | MtrunA17_Chr2g0290391 | 25.430 | 291 | 195 | 8 | 157 | 442 | 398 | 671 | 2.45e-22 | 102 |
MsaG042713 | MtrunA17_Chr2g0324011 | 25.909 | 220 | 156 | 3 | 172 | 387 | 358 | 574 | 5.56e-21 | 97.4 |
MsaG042713 | MtrunA17_Chr1g0198761 | 28.774 | 212 | 140 | 4 | 171 | 378 | 405 | 609 | 9.52e-21 | 97.1 |
MsaG042713 | MtrunA17_Chr2g0291591 | 36.719 | 128 | 78 | 1 | 170 | 294 | 405 | 532 | 3.13e-19 | 91.7 |
MsaG042713 | MtrunA17_Chr7g0254601 | 45.161 | 62 | 34 | 0 | 535 | 596 | 206 | 267 | 2.70e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042713 | AT2G27110.3 | 49.585 | 482 | 225 | 8 | 168 | 645 | 222 | 689 | 1.09e-157 | 471 |
MsaG042713 | AT2G27110.2 | 49.585 | 482 | 225 | 8 | 168 | 645 | 367 | 834 | 7.38e-156 | 470 |
MsaG042713 | AT2G27110.2 | 41.270 | 126 | 70 | 3 | 20 | 142 | 32 | 156 | 3.19e-16 | 83.2 |
MsaG042713 | AT2G27110.1 | 49.585 | 482 | 225 | 8 | 168 | 645 | 367 | 834 | 7.38e-156 | 470 |
MsaG042713 | AT2G27110.1 | 41.270 | 126 | 70 | 3 | 20 | 142 | 32 | 156 | 3.19e-16 | 83.2 |
MsaG042713 | AT4G38180.1 | 46.405 | 306 | 152 | 4 | 168 | 463 | 420 | 723 | 1.58e-82 | 276 |
MsaG042713 | AT4G38170.1 | 47.099 | 293 | 141 | 5 | 168 | 456 | 185 | 467 | 6.92e-82 | 269 |
MsaG042713 | AT4G15090.1 | 33.333 | 306 | 187 | 4 | 171 | 469 | 399 | 694 | 4.36e-52 | 193 |
MsaG042713 | AT4G15090.5 | 33.333 | 306 | 187 | 4 | 171 | 469 | 399 | 694 | 4.36e-52 | 193 |
MsaG042713 | AT4G15090.3 | 33.333 | 306 | 187 | 4 | 171 | 469 | 399 | 694 | 4.36e-52 | 193 |
MsaG042713 | AT4G15090.2 | 33.333 | 306 | 187 | 4 | 171 | 469 | 399 | 694 | 4.36e-52 | 193 |
MsaG042713 | AT4G15090.4 | 33.333 | 306 | 187 | 4 | 171 | 469 | 399 | 694 | 4.36e-52 | 193 |
MsaG042713 | AT3G22170.2 | 36.538 | 260 | 155 | 3 | 171 | 427 | 408 | 660 | 4.39e-51 | 190 |
MsaG042713 | AT3G22170.1 | 36.538 | 260 | 155 | 3 | 171 | 427 | 408 | 660 | 4.39e-51 | 190 |
MsaG042713 | AT3G06250.2 | 35.338 | 266 | 167 | 3 | 172 | 436 | 497 | 758 | 2.77e-45 | 172 |
MsaG042713 | AT3G06250.1 | 35.338 | 266 | 167 | 3 | 172 | 436 | 497 | 758 | 2.77e-45 | 172 |
MsaG042713 | AT3G06250.3 | 35.338 | 266 | 167 | 3 | 172 | 436 | 497 | 758 | 2.77e-45 | 172 |
MsaG042713 | AT1G76320.3 | 33.948 | 271 | 164 | 5 | 171 | 436 | 336 | 596 | 2.85e-45 | 171 |
MsaG042713 | AT1G76320.1 | 33.948 | 271 | 164 | 5 | 171 | 436 | 336 | 596 | 3.47e-45 | 172 |
MsaG042713 | AT1G76320.4 | 33.948 | 271 | 164 | 5 | 171 | 436 | 336 | 596 | 3.47e-45 | 172 |
MsaG042713 | AT1G76320.2 | 33.948 | 271 | 164 | 5 | 171 | 436 | 336 | 596 | 3.83e-45 | 172 |
MsaG042713 | AT5G18960.2 | 34.444 | 270 | 172 | 3 | 168 | 436 | 517 | 782 | 4.96e-45 | 172 |
MsaG042713 | AT5G18960.1 | 34.444 | 270 | 172 | 3 | 168 | 436 | 517 | 782 | 4.96e-45 | 172 |
MsaG042713 | AT4G19990.1 | 34.767 | 279 | 169 | 7 | 166 | 437 | 285 | 557 | 1.06e-42 | 164 |
MsaG042713 | AT4G19990.5 | 34.767 | 279 | 169 | 7 | 166 | 437 | 342 | 614 | 1.56e-42 | 164 |
MsaG042713 | AT4G19990.6 | 34.767 | 279 | 169 | 7 | 166 | 437 | 342 | 614 | 1.63e-42 | 164 |
MsaG042713 | AT4G19990.2 | 34.767 | 279 | 169 | 7 | 166 | 437 | 342 | 614 | 1.63e-42 | 164 |
MsaG042713 | AT4G19990.3 | 34.767 | 279 | 169 | 7 | 166 | 437 | 342 | 614 | 1.73e-42 | 164 |
MsaG042713 | AT4G19990.4 | 34.767 | 279 | 169 | 7 | 166 | 437 | 342 | 614 | 1.73e-42 | 164 |
MsaG042713 | AT4G19990.7 | 34.767 | 279 | 169 | 7 | 166 | 437 | 356 | 628 | 2.33e-42 | 164 |
MsaG042713 | AT2G32250.7 | 31.599 | 269 | 175 | 4 | 171 | 436 | 302 | 564 | 1.61e-39 | 155 |
MsaG042713 | AT2G32250.8 | 31.599 | 269 | 175 | 4 | 171 | 436 | 302 | 564 | 1.67e-39 | 155 |
MsaG042713 | AT2G32250.5 | 31.599 | 269 | 175 | 4 | 171 | 436 | 343 | 605 | 1.75e-39 | 155 |
MsaG042713 | AT2G32250.2 | 32.830 | 265 | 166 | 5 | 171 | 432 | 343 | 598 | 1.82e-39 | 155 |
MsaG042713 | AT2G32250.4 | 32.830 | 265 | 166 | 5 | 171 | 432 | 343 | 598 | 1.82e-39 | 155 |
MsaG042713 | AT2G32250.6 | 32.830 | 265 | 166 | 5 | 171 | 432 | 343 | 598 | 2.07e-39 | 155 |
MsaG042713 | AT2G32250.1 | 32.830 | 265 | 166 | 5 | 171 | 432 | 343 | 598 | 2.07e-39 | 155 |
MsaG042713 | AT2G32250.3 | 32.830 | 265 | 166 | 5 | 171 | 432 | 343 | 598 | 2.07e-39 | 155 |
MsaG042713 | AT1G52520.1 | 30.634 | 284 | 186 | 5 | 170 | 443 | 418 | 700 | 5.74e-37 | 147 |
MsaG042713 | AT1G80010.1 | 30.282 | 284 | 188 | 6 | 166 | 441 | 439 | 720 | 8.34e-35 | 141 |
MsaG042713 | AT1G10240.2 | 26.042 | 288 | 198 | 5 | 168 | 447 | 398 | 678 | 1.92e-24 | 108 |
MsaG042713 | AT1G10240.1 | 26.042 | 288 | 198 | 5 | 168 | 447 | 398 | 678 | 1.92e-24 | 108 |
MsaG042713 | AT5G28530.5 | 31.481 | 216 | 131 | 7 | 167 | 378 | 349 | 551 | 4.47e-22 | 101 |
MsaG042713 | AT5G28530.3 | 31.481 | 216 | 131 | 7 | 167 | 378 | 412 | 614 | 6.52e-22 | 100 |
MsaG042713 | AT5G28530.2 | 31.481 | 216 | 131 | 7 | 167 | 378 | 412 | 614 | 6.52e-22 | 100 |
MsaG042713 | AT5G28530.4 | 31.193 | 218 | 133 | 7 | 167 | 378 | 349 | 555 | 8.39e-22 | 100 |
MsaG042713 | AT5G28530.1 | 31.193 | 218 | 133 | 7 | 167 | 378 | 412 | 618 | 1.26e-21 | 100 |
Find 129 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTTCTTCTGCAAGCTTAA+TGG | 0.102031 | 8:+26285419 | None:intergenic |
GTGTCGGTTCAATTGAATTT+TGG | 0.150656 | 8:-26287024 | MsaT042713.1:CDS |
TACTCGAAGTGTCTGAGTTC+TGG | 0.187399 | 8:+26284938 | None:intergenic |
ATGGACTTGAAACAAGAAAT+AGG | 0.244365 | 8:+26284979 | None:intergenic |
TTCTCTAGCTTCCTCTAAAA+TGG | 0.262504 | 8:-26286879 | MsaT042713.1:CDS |
AGTGTTCCGTTAGATATTTC+TGG | 0.290008 | 8:-26285666 | MsaT042713.1:CDS |
GACATGGAACTTCCCGTTAA+TGG | 0.294952 | 8:-26285168 | MsaT042713.1:CDS |
GTTTCTATGAAGGGCAAATA+TGG | 0.301059 | 8:-26286773 | MsaT042713.1:CDS |
TCATACTGCTTAAAGAATAA+AGG | 0.303355 | 8:+26285942 | None:intergenic |
GCAGGAGCAGGCGCAGGAGC+AGG | 0.307404 | 8:+26285123 | None:intergenic |
GAACCGATTGGTGCAGAAAA+TGG | 0.311388 | 8:-26286749 | MsaT042713.1:intron |
AGTTTGCAACCCTGTATTTA+CGG | 0.313411 | 8:+26285718 | None:intergenic |
CCTTAAGAGAGAGTACTAAA+TGG | 0.318366 | 8:-26285359 | MsaT042713.1:CDS |
ATAAAGATGGTAATGGAAAT+AGG | 0.318910 | 8:-26287153 | MsaT042713.1:CDS |
GATTTCAGCCAAAGTTCTTC+AGG | 0.323202 | 8:-26284571 | MsaT042713.1:CDS |
TAGAGAGAAAAGATAAATAT+TGG | 0.333709 | 8:-26286934 | MsaT042713.1:CDS |
AGAAACATTGCAATCGTTAC+TGG | 0.334251 | 8:+26286790 | None:intergenic |
ACTCGAAGTGTCTGAGTTCT+GGG | 0.351435 | 8:+26284939 | None:intergenic |
GTTTATATAGCCATTGAAAA+AGG | 0.353171 | 8:+26285980 | None:intergenic |
CTGTCGAATGTTTGAATACT+CGG | 0.365193 | 8:-26285625 | MsaT042713.1:CDS |
CTAGATAAATATGGTCTTGA+AGG | 0.368386 | 8:-26286107 | MsaT042713.1:CDS |
CATTAAATCCAGTGAATCTC+TGG | 0.388918 | 8:+26284247 | None:intergenic |
TGCTCCTGCTCCTGTTCATC+GGG | 0.389637 | 8:-26285109 | MsaT042713.1:CDS |
CTGCTCCTGCTCCTGTTCAT+CGG | 0.389820 | 8:-26285110 | MsaT042713.1:CDS |
CCATTTAGTACTCTCTCTTA+AGG | 0.394406 | 8:+26285359 | None:intergenic |
CTTGTTTCAAGTCCATGACT+TGG | 0.394433 | 8:-26284972 | MsaT042713.1:CDS |
GGTGCCGGAGTCTTCAATAA+TGG | 0.401344 | 8:+26285855 | None:intergenic |
CACCTCCAACTCCGAGCACT+CGG | 0.409119 | 8:-26285302 | MsaT042713.1:CDS |
GCCATTAAGCTTGCAGAAGA+AGG | 0.411113 | 8:-26285420 | MsaT042713.1:CDS |
ACAAGAGCAGTTCTATTAAC+AGG | 0.417935 | 8:+26284460 | None:intergenic |
TGGTACTTATCTTTGTATCC+TGG | 0.419017 | 8:+26284297 | None:intergenic |
CTGTCTCTCCTGAAGAACTT+TGG | 0.422776 | 8:+26284563 | None:intergenic |
AAAATGTCTCGAACATTCAT+TGG | 0.423897 | 8:-26285919 | MsaT042713.1:CDS |
GGGCCATTGTCCCGATGAAC+AGG | 0.435468 | 8:+26285099 | None:intergenic |
CGCATCAGTTATCAGCTCAT+TGG | 0.437287 | 8:-26284484 | MsaT042713.1:CDS |
CCGTCCCATCATGGTGGTCC+TGG | 0.437514 | 8:-26285224 | MsaT042713.1:CDS |
CGATTGCAATGTTTCTATGA+AGG | 0.442454 | 8:-26286783 | MsaT042713.1:CDS |
ATGGTGTGGTCCGTAAATAC+AGG | 0.442656 | 8:-26285728 | MsaT042713.1:CDS |
AGGATGATTCAGACCATTAA+CGG | 0.446292 | 8:+26285155 | None:intergenic |
CCCCGAGTGCTCGGAGTTGG+AGG | 0.451753 | 8:+26285300 | None:intergenic |
AAGTCTCTTCTAGATAAATA+TGG | 0.462546 | 8:-26286116 | MsaT042713.1:CDS |
CCGAGTTACCAGAGATTCAC+TGG | 0.463863 | 8:-26284255 | MsaT042713.1:CDS |
TTCTTCATCTGTTCCAACAC+TGG | 0.469300 | 8:+26285503 | None:intergenic |
ATGGTCTTGAAGGAAATGAT+TGG | 0.470229 | 8:-26286097 | MsaT042713.1:CDS |
GAATTTCAGCTCCGTTTCCC+TGG | 0.472074 | 8:+26284277 | None:intergenic |
CTTAAGAGAGAGTACTAAAT+GGG | 0.478228 | 8:-26285358 | MsaT042713.1:CDS |
GAAGTTAAAGCAATGTATGA+AGG | 0.480096 | 8:-26287229 | MsaT042713.1:CDS |
GTGAATGATAAAGATGGTAA+TGG | 0.485465 | 8:-26287160 | MsaT042713.1:CDS |
AACTGCTCTTGTTAGTCTAA+AGG | 0.488581 | 8:-26284449 | MsaT042713.1:intron |
GTTCTAGTGAAGAATTCAAA+AGG | 0.489336 | 8:-26286991 | MsaT042713.1:CDS |
CGATGAACAGGAGCAGGAGC+AGG | 0.492829 | 8:+26285111 | None:intergenic |
ATCTTGCTATTATCTTCTTG+AGG | 0.494005 | 8:+26285270 | None:intergenic |
TTGTTTCAAGTCCATGACTT+GGG | 0.494299 | 8:-26284971 | MsaT042713.1:CDS |
ACAGGAGCAGGAGCAGGCGC+AGG | 0.497313 | 8:+26285117 | None:intergenic |
TGTATAATGCTCGCAAACAA+TGG | 0.501011 | 8:-26286064 | MsaT042713.1:CDS |
TGGACTTGAAACAAGAAATA+GGG | 0.506722 | 8:+26284980 | None:intergenic |
GATTGCAATGTTTCTATGAA+GGG | 0.507419 | 8:-26286782 | MsaT042713.1:CDS |
GGCAAATATGGCGAACCGAT+TGG | 0.509429 | 8:-26286761 | MsaT042713.1:CDS |
GTACCCCGAGTGCTCGGAGT+TGG | 0.515967 | 8:+26285297 | None:intergenic |
GTATAATGCTCGCAAACAAT+GGG | 0.516805 | 8:-26286063 | MsaT042713.1:CDS |
AAAGATAAGTACCAGGGAAA+CGG | 0.517063 | 8:-26284288 | MsaT042713.1:CDS |
ATTGCAATCGTTACTGGCAT+CGG | 0.519700 | 8:+26286796 | None:intergenic |
CAAGTTGCAATGCAATGCTT+CGG | 0.521228 | 8:-26286958 | MsaT042713.1:CDS |
CGGAGTCTTCAATAATGGTT+CGG | 0.523865 | 8:+26285860 | None:intergenic |
GCAAATAAAATTGAAGATGA+TGG | 0.524082 | 8:-26285747 | MsaT042713.1:CDS |
GGCATAGTACCCCGAGTGCT+CGG | 0.527077 | 8:+26285291 | None:intergenic |
CCATTAAGCTTGCAGAAGAA+GGG | 0.530542 | 8:-26285419 | MsaT042713.1:CDS |
TTGTCCCGATGAACAGGAGC+AGG | 0.530575 | 8:+26285105 | None:intergenic |
CCAGTGAATCTCTGGTAACT+CGG | 0.535044 | 8:+26284255 | None:intergenic |
GGATGATTCAGACCATTAAC+GGG | 0.536892 | 8:+26285156 | None:intergenic |
GTTAGATATTTCTGGAGCAA+AGG | 0.542829 | 8:-26285658 | MsaT042713.1:CDS |
AGTGCATATGCAAGACATGT+AGG | 0.545661 | 8:-26287076 | MsaT042713.1:CDS |
GCTCCTGTTCATCGGGACAA+TGG | 0.548971 | 8:-26285102 | MsaT042713.1:CDS |
ACCTCCAACTCCGAGCACTC+GGG | 0.549197 | 8:-26285301 | MsaT042713.1:CDS |
ATTGAAGACTCCGGCACCAA+TGG | 0.552402 | 8:-26285850 | MsaT042713.1:CDS |
AGACAAGTGAATGATAAAGA+TGG | 0.560491 | 8:-26287166 | MsaT042713.1:CDS |
ATAAAGGCACGGTTGTCTGT+TGG | 0.563043 | 8:+26285958 | None:intergenic |
GACAGTGACAAAGTTTGTTG+AGG | 0.563191 | 8:-26286912 | MsaT042713.1:CDS |
CAATAATGGTTCGGTACGAA+TGG | 0.563427 | 8:+26285869 | None:intergenic |
CAGATCAATACAACGCTATG+TGG | 0.567741 | 8:+26285075 | None:intergenic |
GTAGGTTCTAAAAGAAACGT+TGG | 0.567855 | 8:-26286827 | MsaT042713.1:CDS |
GCAAATTATGACTGCGAACG+CGG | 0.571222 | 8:-26287194 | MsaT042713.1:CDS |
CGAGTCATTGACTCCAACAT+GGG | 0.573093 | 8:+26284505 | None:intergenic |
AGGCAATACTGAATGTGGCC+AGG | 0.576214 | 8:+26285206 | None:intergenic |
AGGATACAAAGATAAGTACC+AGG | 0.577332 | 8:-26284295 | MsaT042713.1:CDS |
CGTTTCAAAATGTAGTGTGA+TGG | 0.580804 | 8:+26285546 | None:intergenic |
GCTGCTTTAACTTCAAAACA+TGG | 0.582573 | 8:-26286011 | MsaT042713.1:CDS |
GGTTTCAATAACCCAAGTCA+TGG | 0.587419 | 8:+26284960 | None:intergenic |
CATTAAGCTTGCAGAAGAAG+GGG | 0.587853 | 8:-26285418 | MsaT042713.1:CDS |
GCTTGCAGAAGAAGGGGCAG+TGG | 0.589232 | 8:-26285412 | MsaT042713.1:CDS |
ATCAATACAACGCTATGTGG+AGG | 0.590416 | 8:+26285078 | None:intergenic |
GCAGGAGCAGGAGCAATACA+AGG | 0.591029 | 8:+26285135 | None:intergenic |
AGATAATAGCGAGGCAAACA+CGG | 0.591414 | 8:-26285691 | MsaT042713.1:CDS |
TCAGTTTAGTATTTATGACA+TGG | 0.595312 | 8:-26285184 | MsaT042713.1:CDS |
AAGAATGTAAAATCCAGTGT+TGG | 0.595851 | 8:-26285516 | MsaT042713.1:CDS |
GCGAGTCATTGACTCCAACA+TGG | 0.596353 | 8:+26284504 | None:intergenic |
TGTGGCCAGGACCACCATGA+TGG | 0.597132 | 8:+26285219 | None:intergenic |
TGTCGAATGTTTGAATACTC+GGG | 0.598617 | 8:-26285624 | MsaT042713.1:CDS |
AAGTTAAAGCAATGTATGAA+GGG | 0.599193 | 8:-26287228 | MsaT042713.1:CDS |
AGTTGCAGTGATCAACATGA+AGG | 0.600270 | 8:-26284914 | MsaT042713.1:intron |
GTGGCCAGGACCACCATGAT+GGG | 0.600744 | 8:+26285220 | None:intergenic |
TCAATACAACGCTATGTGGA+GGG | 0.608118 | 8:+26285079 | None:intergenic |
AACTGAGGCAATACTGAATG+TGG | 0.609579 | 8:+26285201 | None:intergenic |
ATGTGTCACGAAAGTACGCA+GGG | 0.613235 | 8:+26286039 | None:intergenic |
CCAGGACCACCATGATGGGA+CGG | 0.613267 | 8:+26285224 | None:intergenic |
GGAAATAGGAAACCACGAGT+TGG | 0.619283 | 8:-26287139 | MsaT042713.1:CDS |
TTAAAGATCATGCCAACTCG+TGG | 0.622820 | 8:+26287127 | None:intergenic |
AGGAAGCTAGAGAATGGCTG+TGG | 0.625262 | 8:+26286888 | None:intergenic |
AGAATTCAAAAGGAAGAATG+TGG | 0.627047 | 8:-26286981 | MsaT042713.1:CDS |
CCTCCAACTCCGAGCACTCG+GGG | 0.631921 | 8:-26285300 | MsaT042713.1:CDS |
AGAGACTTATAACGCTGCAA+AGG | 0.632049 | 8:-26285385 | MsaT042713.1:CDS |
AGTGCAGTTCAGAGTGACGA+AGG | 0.632715 | 8:-26284539 | MsaT042713.1:CDS |
AATGTGTCACGAAAGTACGC+AGG | 0.636959 | 8:+26286038 | None:intergenic |
CGAACCATTATTGAAGACTC+CGG | 0.639988 | 8:-26285859 | MsaT042713.1:CDS |
CTGCTTAAAGAATAAAGGCA+CGG | 0.648678 | 8:+26285947 | None:intergenic |
TTTGCTCCAGAAATATCTAA+CGG | 0.651687 | 8:+26285660 | None:intergenic |
AGACATGTAGGATTTAGCAT+CGG | 0.652385 | 8:-26287064 | MsaT042713.1:CDS |
TTGAAGCCGTCCCATCATGG+TGG | 0.658753 | 8:-26285230 | MsaT042713.1:CDS |
TAAAATTGAAGATGATGGTG+TGG | 0.664944 | 8:-26285742 | MsaT042713.1:CDS |
AAACTTTCAAGATAATAGCG+AGG | 0.667294 | 8:-26285700 | MsaT042713.1:CDS |
CTAAAATGGAGAAACACAGT+CGG | 0.679548 | 8:-26286865 | MsaT042713.1:CDS |
ATGTCATAAATACTAAACTG+AGG | 0.681727 | 8:+26285186 | None:intergenic |
GGATACAAAGATAAGTACCA+GGG | 0.686354 | 8:-26284294 | MsaT042713.1:CDS |
GAAGAAATACCAGATCCACT+CGG | 0.707182 | 8:-26285486 | MsaT042713.1:CDS |
TGGTGTGGTCCGTAAATACA+GGG | 0.707876 | 8:-26285727 | MsaT042713.1:CDS |
AGAAACACAGTCGGCCACGT+AGG | 0.710052 | 8:-26286856 | MsaT042713.1:CDS |
AATGTATGAAGGGAAAAGCG+AGG | 0.719118 | 8:-26287218 | MsaT042713.1:CDS |
GAACCTACAAAATGCCTACG+TGG | 0.727883 | 8:+26286842 | None:intergenic |
TGTGTCACGAAAGTACGCAG+GGG | 0.770272 | 8:+26286040 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 26284211 | 26287257 | 26284211 | ID=MsaG042713 |
Chr8 | mRNA | 26284211 | 26287257 | 26284211 | ID=MsaT042713.1;Parent=MsaG042713 |
Chr8 | exon | 26284211 | 26284321 | 26284211 | ID=MsaT042713.1.exon5;Parent=MsaT042713.1 |
Chr8 | CDS | 26284211 | 26284321 | 26284211 | ID=cds.MsaT042713.1;Parent=MsaT042713.1 |
Chr8 | exon | 26284450 | 26284599 | 26284450 | ID=MsaT042713.1.exon4;Parent=MsaT042713.1 |
Chr8 | CDS | 26284450 | 26284599 | 26284450 | ID=cds.MsaT042713.1;Parent=MsaT042713.1 |
Chr8 | exon | 26284915 | 26285007 | 26284915 | ID=MsaT042713.1.exon3;Parent=MsaT042713.1 |
Chr8 | CDS | 26284915 | 26285007 | 26284915 | ID=cds.MsaT042713.1;Parent=MsaT042713.1 |
Chr8 | exon | 26285086 | 26286161 | 26285086 | ID=MsaT042713.1.exon2;Parent=MsaT042713.1 |
Chr8 | CDS | 26285086 | 26286161 | 26285086 | ID=cds.MsaT042713.1;Parent=MsaT042713.1 |
Chr8 | exon | 26286750 | 26287257 | 26286750 | ID=MsaT042713.1.exon1;Parent=MsaT042713.1 |
Chr8 | CDS | 26286750 | 26287257 | 26286750 | ID=cds.MsaT042713.1;Parent=MsaT042713.1 |
Gene Sequence |
Protein sequence |