Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042728 | XP_003628145.1 | 90.819 | 403 | 26 | 2 | 1 | 403 | 48 | 439 | 0.0 | 751 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042728 | sp|Q93ZL5|CDF2_ARATH | 36.816 | 402 | 192 | 13 | 27 | 402 | 91 | 456 | 1.12e-59 | 203 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042728 | tr|G8A1Q8|G8A1Q8_MEDTR | 90.819 | 403 | 26 | 2 | 1 | 403 | 48 | 439 | 0.0 | 751 |
Gene ID | Type | Classification |
---|---|---|
MsaG042728 | TF | C2C2-Dof |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042728 | MtrunA17_Chr8g0355261 | 90.819 | 403 | 26 | 2 | 1 | 403 | 48 | 439 | 0.0 | 751 |
MsaG042728 | MtrunA17_Chr6g0453321 | 37.000 | 400 | 179 | 13 | 56 | 402 | 115 | 494 | 1.51e-64 | 214 |
MsaG042728 | MtrunA17_Chr4g0042481 | 36.483 | 381 | 170 | 14 | 65 | 401 | 111 | 463 | 4.86e-61 | 204 |
MsaG042728 | MtrunA17_Chr7g0217581 | 36.364 | 385 | 181 | 14 | 62 | 402 | 218 | 582 | 1.50e-60 | 206 |
MsaG042728 | MtrunA17_Chr7g0254161 | 36.772 | 378 | 165 | 9 | 61 | 403 | 86 | 424 | 3.42e-59 | 198 |
MsaG042728 | MtrunA17_Chr3g0092111 | 35.225 | 423 | 202 | 16 | 22 | 402 | 72 | 464 | 4.53e-58 | 196 |
MsaG042728 | MtrunA17_Chr5g0417551 | 32.344 | 337 | 139 | 14 | 70 | 403 | 121 | 371 | 2.14e-41 | 150 |
MsaG042728 | MtrunA17_Chr6g0460721 | 34.035 | 285 | 137 | 9 | 24 | 275 | 32 | 298 | 9.89e-39 | 141 |
MsaG042728 | MtrunA17_Chr6g0460731 | 30.619 | 307 | 131 | 9 | 64 | 311 | 84 | 367 | 2.29e-36 | 136 |
MsaG042728 | MtrunA17_Chr2g0283811 | 78.333 | 60 | 13 | 0 | 70 | 129 | 41 | 100 | 2.69e-32 | 119 |
MsaG042728 | MtrunA17_Chr5g0417571 | 64.557 | 79 | 28 | 0 | 51 | 129 | 113 | 191 | 2.95e-31 | 121 |
MsaG042728 | MtrunA17_Chr5g0417601 | 62.338 | 77 | 29 | 0 | 53 | 129 | 117 | 193 | 1.18e-29 | 118 |
MsaG042728 | MtrunA17_Chr5g0417601 | 38.393 | 112 | 52 | 3 | 302 | 403 | 277 | 381 | 5.59e-13 | 69.7 |
MsaG042728 | MtrunA17_Chr5g0417561 | 61.446 | 83 | 27 | 2 | 52 | 129 | 90 | 172 | 7.68e-29 | 115 |
MsaG042728 | MtrunA17_Chr5g0417561 | 39.000 | 100 | 52 | 3 | 306 | 403 | 271 | 363 | 6.58e-11 | 63.5 |
MsaG042728 | MtrunA17_Chr4g0010151 | 67.797 | 59 | 19 | 0 | 72 | 130 | 78 | 136 | 2.45e-25 | 105 |
MsaG042728 | MtrunA17_Chr8g0346551 | 62.903 | 62 | 23 | 0 | 71 | 132 | 19 | 80 | 3.89e-25 | 103 |
MsaG042728 | MtrunA17_Chr2g0308011 | 74.000 | 50 | 13 | 0 | 75 | 124 | 36 | 85 | 9.84e-25 | 100 |
MsaG042728 | MtrunA17_Chr3g0127201 | 65.517 | 58 | 20 | 0 | 73 | 130 | 24 | 81 | 1.51e-24 | 102 |
MsaG042728 | MtrunA17_Chr8g0374111 | 62.121 | 66 | 24 | 1 | 76 | 141 | 29 | 93 | 1.98e-24 | 100 |
MsaG042728 | MtrunA17_Chr8g0367161 | 50.000 | 82 | 41 | 0 | 50 | 131 | 6 | 87 | 2.72e-24 | 102 |
MsaG042728 | MtrunA17_Chr2g0328021 | 61.194 | 67 | 26 | 0 | 64 | 130 | 50 | 116 | 2.78e-24 | 101 |
MsaG042728 | MtrunA17_Chr4g0031411 | 67.797 | 59 | 19 | 0 | 72 | 130 | 71 | 129 | 2.80e-24 | 102 |
MsaG042728 | MtrunA17_Chr4g0061761 | 71.698 | 53 | 15 | 0 | 74 | 126 | 38 | 90 | 2.83e-24 | 102 |
MsaG042728 | MtrunA17_Chr8g0374251 | 54.795 | 73 | 33 | 0 | 76 | 148 | 68 | 140 | 4.38e-24 | 102 |
MsaG042728 | MtrunA17_Chr2g0326001 | 63.333 | 60 | 22 | 0 | 71 | 130 | 35 | 94 | 1.17e-23 | 99.8 |
MsaG042728 | MtrunA17_Chr8g0341671 | 69.231 | 52 | 16 | 0 | 76 | 127 | 20 | 71 | 5.15e-23 | 96.3 |
MsaG042728 | MtrunA17_Chr1g0188851 | 59.016 | 61 | 25 | 0 | 70 | 130 | 37 | 97 | 6.62e-23 | 97.8 |
MsaG042728 | MtrunA17_Chr7g0237921 | 69.811 | 53 | 16 | 0 | 78 | 130 | 78 | 130 | 7.65e-23 | 98.6 |
MsaG042728 | MtrunA17_Chr4g0047001 | 68.519 | 54 | 17 | 0 | 78 | 131 | 57 | 110 | 9.51e-23 | 99.0 |
MsaG042728 | MtrunA17_Chr7g0223311 | 71.698 | 53 | 15 | 0 | 78 | 130 | 79 | 131 | 1.11e-22 | 98.6 |
MsaG042728 | MtrunA17_Chr5g0411951 | 65.455 | 55 | 19 | 0 | 72 | 126 | 39 | 93 | 6.71e-22 | 95.9 |
MsaG042728 | MtrunA17_Chr4g0030051 | 60.000 | 65 | 25 | 1 | 65 | 128 | 29 | 93 | 4.95e-21 | 92.4 |
MsaG042728 | MtrunA17_Chr3g0126201 | 64.151 | 53 | 19 | 0 | 78 | 130 | 53 | 105 | 5.90e-21 | 92.8 |
MsaG042728 | MtrunA17_Chr4g0047761 | 64.286 | 56 | 19 | 1 | 76 | 131 | 72 | 126 | 6.59e-21 | 92.8 |
MsaG042728 | MtrunA17_Chr3g0117601 | 53.521 | 71 | 32 | 1 | 57 | 126 | 41 | 111 | 8.06e-21 | 92.8 |
MsaG042728 | MtrunA17_Chr2g0282051 | 64.815 | 54 | 18 | 1 | 78 | 131 | 48 | 100 | 1.04e-20 | 91.3 |
MsaG042728 | MtrunA17_Chr2g0282511 | 68.000 | 50 | 16 | 0 | 75 | 124 | 44 | 93 | 1.13e-20 | 91.7 |
MsaG042728 | MtrunA17_Chr1g0177251 | 64.151 | 53 | 19 | 0 | 78 | 130 | 14 | 66 | 1.29e-20 | 91.3 |
MsaG042728 | MtrunA17_Chr2g0282441 | 68.000 | 50 | 16 | 0 | 78 | 127 | 27 | 76 | 1.41e-20 | 92.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042728 | AT5G39660.3 | 36.816 | 402 | 192 | 13 | 27 | 402 | 91 | 456 | 1.14e-60 | 203 |
MsaG042728 | AT5G39660.1 | 36.816 | 402 | 192 | 13 | 27 | 402 | 91 | 456 | 1.14e-60 | 203 |
MsaG042728 | AT5G39660.2 | 36.816 | 402 | 192 | 13 | 27 | 402 | 91 | 456 | 1.14e-60 | 203 |
MsaG042728 | AT3G47500.1 | 36.292 | 383 | 176 | 16 | 63 | 403 | 92 | 448 | 2.69e-57 | 194 |
MsaG042728 | AT1G69570.1 | 31.281 | 406 | 175 | 12 | 27 | 403 | 67 | 397 | 1.67e-44 | 159 |
MsaG042728 | AT1G26790.1 | 29.282 | 362 | 170 | 15 | 53 | 403 | 86 | 372 | 1.17e-34 | 132 |
MsaG042728 | AT1G29160.1 | 80.000 | 60 | 12 | 0 | 70 | 129 | 56 | 115 | 4.23e-34 | 125 |
MsaG042728 | AT5G62430.1 | 62.921 | 89 | 32 | 1 | 41 | 129 | 20 | 107 | 5.80e-34 | 128 |
MsaG042728 | AT5G62430.1 | 42.308 | 104 | 40 | 4 | 308 | 403 | 207 | 298 | 3.94e-12 | 67.0 |
MsaG042728 | AT2G34140.1 | 76.667 | 60 | 14 | 0 | 70 | 129 | 52 | 111 | 2.19e-32 | 120 |
MsaG042728 | AT5G60850.1 | 65.217 | 69 | 22 | 1 | 76 | 144 | 51 | 117 | 6.88e-26 | 106 |
MsaG042728 | AT3G55370.1 | 67.797 | 59 | 19 | 0 | 72 | 130 | 72 | 130 | 9.41e-25 | 103 |
MsaG042728 | AT3G55370.2 | 67.797 | 59 | 19 | 0 | 72 | 130 | 72 | 130 | 1.00e-24 | 104 |
MsaG042728 | AT1G51700.1 | 67.273 | 55 | 18 | 0 | 76 | 130 | 33 | 87 | 1.21e-24 | 100 |
MsaG042728 | AT2G37590.1 | 66.102 | 59 | 20 | 0 | 72 | 130 | 85 | 143 | 1.44e-24 | 103 |
MsaG042728 | AT3G55370.3 | 67.797 | 59 | 19 | 0 | 72 | 130 | 117 | 175 | 1.46e-24 | 104 |
MsaG042728 | AT2G28810.2 | 69.643 | 56 | 17 | 0 | 72 | 127 | 73 | 128 | 2.87e-24 | 102 |
MsaG042728 | AT3G50410.1 | 52.500 | 80 | 28 | 1 | 61 | 130 | 5 | 84 | 3.96e-24 | 100 |
MsaG042728 | AT2G28810.1 | 69.643 | 56 | 17 | 0 | 72 | 127 | 90 | 145 | 5.00e-24 | 102 |
MsaG042728 | AT1G07640.1 | 70.909 | 55 | 16 | 0 | 76 | 130 | 21 | 75 | 5.81e-24 | 100 |
MsaG042728 | AT1G07640.2 | 70.909 | 55 | 16 | 0 | 76 | 130 | 77 | 131 | 9.98e-24 | 101 |
MsaG042728 | AT3G45610.1 | 50.000 | 78 | 34 | 1 | 58 | 130 | 17 | 94 | 1.08e-23 | 99.4 |
MsaG042728 | AT1G07640.3 | 70.909 | 55 | 16 | 0 | 76 | 130 | 85 | 139 | 1.25e-23 | 101 |
MsaG042728 | AT4G00940.1 | 52.564 | 78 | 37 | 0 | 71 | 148 | 63 | 140 | 1.31e-23 | 100 |
MsaG042728 | AT4G00940.3 | 52.564 | 78 | 37 | 0 | 71 | 148 | 63 | 140 | 1.31e-23 | 100 |
MsaG042728 | AT4G00940.2 | 52.564 | 78 | 37 | 0 | 71 | 148 | 63 | 140 | 1.31e-23 | 100 |
MsaG042728 | AT5G65590.1 | 52.273 | 88 | 39 | 1 | 43 | 130 | 11 | 95 | 1.47e-23 | 100 |
MsaG042728 | AT5G60200.1 | 61.017 | 59 | 23 | 0 | 72 | 130 | 51 | 109 | 2.21e-23 | 98.6 |
MsaG042728 | AT3G21270.1 | 69.811 | 53 | 16 | 0 | 76 | 128 | 29 | 81 | 2.51e-23 | 97.1 |
MsaG042728 | AT5G02460.1 | 66.102 | 59 | 20 | 0 | 72 | 130 | 91 | 149 | 3.29e-23 | 100 |
MsaG042728 | AT3G61850.2 | 50.588 | 85 | 40 | 1 | 71 | 153 | 57 | 141 | 4.26e-23 | 98.6 |
MsaG042728 | AT3G61850.3 | 50.588 | 85 | 40 | 1 | 71 | 153 | 57 | 141 | 4.26e-23 | 98.6 |
MsaG042728 | AT4G38000.1 | 68.966 | 58 | 17 | 1 | 75 | 132 | 40 | 96 | 4.30e-23 | 97.8 |
MsaG042728 | AT3G61850.1 | 50.588 | 85 | 40 | 1 | 71 | 153 | 69 | 153 | 4.75e-23 | 98.6 |
MsaG042728 | AT4G24060.1 | 62.069 | 58 | 22 | 0 | 73 | 130 | 50 | 107 | 5.99e-23 | 99.4 |
MsaG042728 | AT3G61850.4 | 50.588 | 85 | 40 | 1 | 71 | 153 | 69 | 153 | 7.12e-23 | 98.6 |
MsaG042728 | AT3G61850.5 | 50.588 | 85 | 40 | 1 | 71 | 153 | 57 | 141 | 7.43e-23 | 98.6 |
MsaG042728 | AT1G64620.1 | 69.231 | 52 | 16 | 0 | 73 | 124 | 46 | 97 | 1.82e-22 | 98.2 |
MsaG042728 | AT4G21050.1 | 46.067 | 89 | 46 | 1 | 63 | 149 | 11 | 99 | 2.56e-22 | 94.7 |
MsaG042728 | AT5G66940.1 | 55.072 | 69 | 23 | 1 | 62 | 130 | 26 | 86 | 3.01e-22 | 94.7 |
MsaG042728 | AT1G28310.1 | 64.286 | 56 | 20 | 0 | 76 | 131 | 27 | 82 | 7.09e-22 | 95.5 |
MsaG042728 | AT2G28510.1 | 67.925 | 53 | 17 | 0 | 78 | 130 | 50 | 102 | 1.02e-21 | 94.7 |
MsaG042728 | AT1G28310.2 | 64.286 | 56 | 20 | 0 | 76 | 131 | 51 | 106 | 1.17e-21 | 95.5 |
MsaG042728 | AT1G47655.1 | 69.388 | 49 | 15 | 0 | 76 | 124 | 29 | 77 | 1.45e-21 | 92.4 |
MsaG042728 | AT2G46590.1 | 64.151 | 53 | 19 | 0 | 71 | 123 | 63 | 115 | 1.31e-20 | 92.8 |
MsaG042728 | AT2G46590.2 | 64.151 | 53 | 19 | 0 | 71 | 123 | 75 | 127 | 1.44e-20 | 92.8 |
MsaG042728 | AT3G52440.1 | 62.264 | 53 | 20 | 0 | 78 | 130 | 27 | 79 | 1.92e-20 | 90.1 |
MsaG042728 | AT3G52440.2 | 62.264 | 53 | 20 | 0 | 78 | 130 | 46 | 98 | 2.14e-20 | 90.5 |
MsaG042728 | AT1G21340.1 | 60.377 | 53 | 21 | 0 | 78 | 130 | 40 | 92 | 7.90e-20 | 89.0 |
MsaG042728 | AT5G62940.1 | 53.125 | 64 | 30 | 0 | 63 | 126 | 60 | 123 | 1.81e-19 | 89.7 |
MsaG042728 | AT4G21040.1 | 67.347 | 49 | 16 | 0 | 78 | 126 | 27 | 75 | 4.14e-18 | 83.2 |
MsaG042728 | AT4G21080.1 | 65.306 | 49 | 17 | 0 | 78 | 126 | 27 | 75 | 2.35e-17 | 81.6 |
MsaG042728 | AT4G21030.1 | 61.364 | 44 | 17 | 0 | 78 | 121 | 23 | 66 | 2.30e-12 | 65.9 |
Find 96 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTCGCTACGGATCCTTTC+AGG | 0.149043 | 8:+26447287 | MsaT042728.1:CDS |
ATACAGTGAAGCAGAATATT+TGG | 0.207890 | 8:+26447070 | MsaT042728.1:CDS |
ACTGGAGCTGTATGCCAAAT+TGG | 0.208206 | 8:+26446914 | MsaT042728.1:CDS |
AAAACACTTCCTTTCATAAT+AGG | 0.219092 | 8:-26447183 | None:intergenic |
TCCATTTGGCCAACCCAATT+TGG | 0.234208 | 8:-26446928 | None:intergenic |
GAACTCTTAGCAGCCTCTTC+TGG | 0.248749 | 8:-26447120 | None:intergenic |
GGACTTGAAGTTATGTTATC+AGG | 0.270788 | 8:-26446850 | None:intergenic |
GGTAATAGGTCACCAACTTT+AGG | 0.303102 | 8:+26447012 | MsaT042728.1:CDS |
TTGATTGTCAGTATCTCTTT+TGG | 0.303295 | 8:-26446281 | None:intergenic |
GGACAGCTGGTGGAGTAATT+AGG | 0.315052 | 8:+26446437 | MsaT042728.1:CDS |
TTTCTTATTTCTACGCTTAC+CGG | 0.334208 | 8:-26446476 | None:intergenic |
AGCTGTTGAGTCCGGGGAAA+TGG | 0.365374 | 8:+26446690 | MsaT042728.1:CDS |
GTGGTACTTGTTCCGGTAAT+AGG | 0.368265 | 8:+26446998 | MsaT042728.1:CDS |
TTGTGGATTAGCTTGTTTGC+TGG | 0.369067 | 8:-26446167 | None:intergenic |
TCCGTGAGAGCTGTTGAGTC+CGG | 0.375755 | 8:+26446682 | MsaT042728.1:CDS |
CATTCCATCCCCTTCATCTT+CGG | 0.385022 | 8:+26446969 | MsaT042728.1:CDS |
GCTAGCAGTGGTACTTGTTC+CGG | 0.387977 | 8:+26446991 | MsaT042728.1:CDS |
GCCAAATTGGGTTGGCCAAA+TGG | 0.399878 | 8:+26446927 | MsaT042728.1:CDS |
GTACCGGTATTGTACATGTT+TGG | 0.410276 | 8:-26446208 | None:intergenic |
GTAATTAGGAATGTTCCTAT+TGG | 0.410965 | 8:+26446451 | MsaT042728.1:CDS |
GGTACTGCATCAAGGGTAAC+AGG | 0.411943 | 8:-26446523 | None:intergenic |
CGAGAACTTGCATTTGACTT+AGG | 0.412589 | 8:-26447219 | None:intergenic |
CTACGCTTACCGGCTCCAAT+AGG | 0.417710 | 8:-26446466 | None:intergenic |
TAAAGTTGGTGACCTATTAC+CGG | 0.424336 | 8:-26447010 | None:intergenic |
TCTACAGCCATCATGGTTGC+AGG | 0.425416 | 8:-26446871 | None:intergenic |
GGACACGGCAGAACCTTGTC+TGG | 0.427129 | 8:-26446322 | None:intergenic |
TACAGTGAAGCAGAATATTT+GGG | 0.435846 | 8:+26447071 | MsaT042728.1:CDS |
ATTAGTTCTATGAACCGCTT+TGG | 0.437435 | 8:-26446245 | None:intergenic |
TACCGATGACACCTTCATAC+TGG | 0.440474 | 8:+26446896 | MsaT042728.1:CDS |
CTAACGATAATTCCTCCATT+TGG | 0.444218 | 8:-26446942 | None:intergenic |
CCGTGAGAGCTGTTGAGTCC+GGG | 0.446769 | 8:+26446683 | MsaT042728.1:CDS |
GTGTCCTCGCTGCAATAGTT+TGG | 0.447623 | 8:+26446339 | MsaT042728.1:CDS |
GTTTCTACCGATTCGCTAAG+AGG | 0.448171 | 8:-26446577 | None:intergenic |
GACTTATCCATGTTGGAATC+CGG | 0.451018 | 8:+26446816 | MsaT042728.1:CDS |
CTATGAACCGCTTTGGTCAC+CGG | 0.458786 | 8:-26446238 | None:intergenic |
CAATACCGGTACTTTGAAAC+CGG | 0.464327 | 8:+26446219 | MsaT042728.1:CDS |
AACAGCTCTCACGGAAGAGC+TGG | 0.466642 | 8:-26446674 | None:intergenic |
TGCCAGAGGTATTGGACAGC+TGG | 0.480992 | 8:+26446424 | MsaT042728.1:CDS |
ATTATTACTCTGCTCCTCCA+TGG | 0.483782 | 8:+26446794 | MsaT042728.1:CDS |
CCGTAGCGAGAGAAAGCAGC+AGG | 0.486490 | 8:-26447276 | None:intergenic |
TTAGGAAAACATTGTAGAGA+TGG | 0.504456 | 8:+26447030 | MsaT042728.1:CDS |
CTGGAGCTGTATGCCAAATT+GGG | 0.505359 | 8:+26446915 | MsaT042728.1:CDS |
CGGTACTTCTACAGCCATCA+TGG | 0.505901 | 8:-26446878 | None:intergenic |
GGAAGTTCCTCTTAGCGAAT+CGG | 0.507168 | 8:+26446570 | MsaT042728.1:CDS |
TTCTGAATACTCCATTTCCC+CGG | 0.508175 | 8:-26446701 | None:intergenic |
AGAAACTGTGTTAAATCTCA+AGG | 0.509219 | 8:+26446594 | MsaT042728.1:CDS |
AGGCTGCTAAGAGTTCTATA+TGG | 0.510382 | 8:+26447127 | MsaT042728.1:CDS |
TTGCTGGAAACTTCATTCAA+AGG | 0.511287 | 8:-26446151 | None:intergenic |
CTCCATGGACTTATCCATGT+TGG | 0.511657 | 8:+26446809 | MsaT042728.1:CDS |
CACCAGCTGTCCAATACCTC+TGG | 0.521554 | 8:-26446426 | None:intergenic |
CCCGGACTCAACAGCTCTCA+CGG | 0.521670 | 8:-26446683 | None:intergenic |
GGTCACCGGTTTCAAAGTAC+CGG | 0.526533 | 8:-26446224 | None:intergenic |
GCTAAGAGGAACTTCCTCCT+TGG | 0.528066 | 8:-26446563 | None:intergenic |
CACTGCTAGCCGAAGATGAA+GGG | 0.530871 | 8:-26446978 | None:intergenic |
AGGAATGTTCCTATTGGAGC+CGG | 0.533831 | 8:+26446457 | MsaT042728.1:CDS |
GGCATACAGCTCCAGTATGA+AGG | 0.544513 | 8:-26446907 | None:intergenic |
TTGGAATCTATGTGTATGAC+AGG | 0.546648 | 8:-26446544 | None:intergenic |
GAAAGTGGAATAGAGCAAGT+TGG | 0.548107 | 8:+26446721 | MsaT042728.1:CDS |
CCACTGCTAGCCGAAGATGA+AGG | 0.549382 | 8:-26446979 | None:intergenic |
ATTCCAAACATGTACAATAC+CGG | 0.552268 | 8:+26446205 | MsaT042728.1:CDS |
TAATAATGAAGCGAATGTAA+AGG | 0.553509 | 8:-26446778 | None:intergenic |
CCTGCTGCTTTCTCTCGCTA+CGG | 0.556631 | 8:+26447276 | MsaT042728.1:CDS |
GAAATGGAGTATTCAGAAAG+TGG | 0.559216 | 8:+26446706 | MsaT042728.1:CDS |
CAGAATTAATGATCCAGAAG+AGG | 0.559620 | 8:+26447107 | MsaT042728.1:CDS |
TTATCAGGCTTAAATGCCAC+CGG | 0.562271 | 8:-26446835 | None:intergenic |
TTCAAGTCCTGCAACCATGA+TGG | 0.566454 | 8:+26446864 | MsaT042728.1:CDS |
ATATTACACACTTTCCTGAA+AGG | 0.568365 | 8:-26447301 | None:intergenic |
TGTCATACACATAGATTCCA+AGG | 0.569094 | 8:+26446546 | MsaT042728.1:CDS |
TATGACAGGTACTGCATCAA+GGG | 0.571285 | 8:-26446530 | None:intergenic |
CTCCAGTATGAAGGTGTCAT+CGG | 0.571622 | 8:-26446898 | None:intergenic |
CAGAACAAACCTATTATGAA+AGG | 0.575243 | 8:+26447174 | MsaT042728.1:CDS |
AAACTATTGCAGCGAGGACA+CGG | 0.577128 | 8:-26446337 | None:intergenic |
ATAGTATTAGCATCTTCTTG+TGG | 0.578337 | 8:-26446184 | None:intergenic |
ACTATGACACCACAATGCAA+TGG | 0.583736 | 8:+26446748 | MsaT042728.1:CDS |
GGAATTAAACCATTGCATTG+TGG | 0.590273 | 8:-26446757 | None:intergenic |
TTCCAACATGGATAAGTCCA+TGG | 0.593931 | 8:-26446811 | None:intergenic |
GTATGACAGGTACTGCATCA+AGG | 0.597457 | 8:-26446531 | None:intergenic |
CGTGAGAGCTGTTGAGTCCG+GGG | 0.600445 | 8:+26446684 | MsaT042728.1:CDS |
ATGGAGGAATTATCGTTAGT+CGG | 0.600520 | 8:+26446946 | MsaT042728.1:CDS |
CTAGCCGAAGATGAAGGGGA+TGG | 0.608686 | 8:-26446973 | None:intergenic |
CCTTCATCTTCGGCTAGCAG+TGG | 0.611094 | 8:+26446979 | MsaT042728.1:CDS |
CAGAGGTATTGGACAGCTGG+TGG | 0.613246 | 8:+26446427 | MsaT042728.1:CDS |
ATTACAATGTTAACCAACCA+AGG | 0.617440 | 8:+26446386 | MsaT042728.1:CDS |
GGACTCTTCTACTGTCAAAG+AGG | 0.624828 | 8:+26446636 | MsaT042728.1:CDS |
GAAACTGTGTTAAATCTCAA+GGG | 0.626874 | 8:+26446595 | MsaT042728.1:CDS |
AGCTGTATGCCAAATTGGGT+TGG | 0.633672 | 8:+26446919 | MsaT042728.1:CDS |
ACTGCTAGCCGAAGATGAAG+GGG | 0.636553 | 8:-26446977 | None:intergenic |
GGAACTTGACAATTCTGCAA+AGG | 0.639283 | 8:-26446502 | None:intergenic |
AATGCCACCGGATTCCAACA+TGG | 0.642061 | 8:-26446823 | None:intergenic |
AAATTGGGTTGGCCAAATGG+AGG | 0.645360 | 8:+26446930 | MsaT042728.1:CDS |
TTATCCATGTTGGAATCCGG+TGG | 0.657026 | 8:+26446819 | MsaT042728.1:CDS |
CGTAGCGAGAGAAAGCAGCA+GGG | 0.664686 | 8:-26447275 | None:intergenic |
GTCTCCAAACTATTGCAGCG+AGG | 0.702604 | 8:-26446343 | None:intergenic |
TTTGAAACCGGTGACCAAAG+CGG | 0.707466 | 8:+26446231 | MsaT042728.1:CDS |
CAACATGGATAAGTCCATGG+AGG | 0.737932 | 8:-26446808 | None:intergenic |
CATACACATAGATTCCAAGG+AGG | 0.765853 | 8:+26446549 | MsaT042728.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 26445014 | 26447320 | 26445014 | ID=MsaG042728 |
Chr8 | mRNA | 26445014 | 26447320 | 26445014 | ID=MsaT042728.1;Parent=MsaG042728 |
Chr8 | exon | 26445014 | 26445016 | 26445014 | ID=MsaT042728.1.exon1;Parent=MsaT042728.1 |
Chr8 | CDS | 26445014 | 26445016 | 26445014 | ID=cds.MsaT042728.1;Parent=MsaT042728.1 |
Chr8 | exon | 26446112 | 26447320 | 26446112 | ID=MsaT042728.1.exon2;Parent=MsaT042728.1 |
Chr8 | CDS | 26446112 | 26447320 | 26446112 | ID=cds.MsaT042728.1;Parent=MsaT042728.1 |
Gene Sequence |
Protein sequence |