AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG042803

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042803 MtrunA17_Chr8g0356071 92.169 166 10 1 1 166 1 163 1.65e-109 309
MsaG042803 MtrunA17_Chr8g0357771 63.277 177 62 1 1 174 1 177 2.19e-76 226
MsaG042803 MtrunA17_Chr1g0169761 57.714 175 71 1 1 172 1 175 6.15e-68 204
MsaG042803 MtrunA17_Chr4g0074101 53.646 192 69 1 1 172 1 192 3.39e-67 203
MsaG042803 MtrunA17_Chr8g0376821 58.683 167 66 1 1 164 1 167 4.06e-65 197
MsaG042803 MtrunA17_Chr1g0180591 54.286 175 77 1 1 172 1 175 2.49e-62 190
MsaG042803 MtrunA17_Chr1g0175601 53.977 176 77 2 1 172 1 176 1.02e-59 184
MsaG042803 MtrunA17_Chr1g0175611 52.976 168 76 1 1 165 1 168 2.11e-58 180
MsaG042803 MtrunA17_Chr4g0052061 38.554 166 83 5 1 161 1 152 3.00e-31 110
MsaG042803 MtrunA17_Chr1g0206991 44.737 114 56 2 2 108 9 122 1.44e-26 99.4
MsaG042803 MtrunA17_Chr3g0099411 39.456 147 68 3 2 141 9 141 1.78e-26 100
MsaG042803 MtrunA17_Chr3g0099421 51.546 97 42 2 2 93 34 130 4.50e-26 100
MsaG042803 MtrunA17_Chr1g0206721 45.614 114 55 2 2 108 9 122 4.59e-26 99.4
MsaG042803 MtrunA17_Chr3g0119901 45.378 119 57 3 1 114 8 123 5.48e-26 98.6
MsaG042803 MtrunA17_Chr5g0419601 53.846 78 36 0 1 78 8 85 6.72e-25 96.7
MsaG042803 MtrunA17_Chr3g0085241 43.802 121 63 2 1 116 40 160 1.02e-24 96.3
MsaG042803 MtrunA17_Chr1g0206701 43.590 117 59 2 2 111 9 125 1.52e-24 95.5
MsaG042803 MtrunA17_Chr5g0422941 55.844 77 34 0 2 78 9 85 1.76e-24 95.5
MsaG042803 MtrunA17_Chr2g0292791 43.590 117 59 2 2 111 9 125 2.72e-24 94.7
MsaG042803 MtrunA17_Chr1g0188671 57.143 77 33 0 2 78 47 123 4.78e-24 95.1
MsaG042803 MtrunA17_Chr1g0208581 38.095 147 65 3 2 122 9 155 5.51e-24 94.0
MsaG042803 MtrunA17_Chr3g0089141 42.149 121 65 2 2 117 9 129 8.24e-24 93.6
MsaG042803 MtrunA17_Chr8g0355091 47.423 97 46 1 2 93 9 105 1.20e-23 93.2
MsaG042803 MtrunA17_Chr1g0149391 41.270 126 62 2 2 115 9 134 1.62e-23 92.8
MsaG042803 MtrunA17_Chr4g0052081 51.316 76 37 0 1 76 1 76 1.69e-23 91.3
MsaG042803 MtrunA17_Chr1g0187361 55.844 77 34 0 2 78 9 85 1.71e-23 92.8
MsaG042803 MtrunA17_Chr1g0208561 45.045 111 55 3 2 107 9 118 1.78e-23 92.4
MsaG042803 MtrunA17_Chr2g0333981 37.313 134 78 3 1 133 11 139 2.42e-23 90.9
MsaG042803 MtrunA17_Chr2g0325971 37.415 147 66 1 2 122 9 155 2.56e-23 92.0
MsaG042803 MtrunA17_Chr5g0422421 53.247 77 36 0 2 78 9 85 1.21e-22 90.5
MsaG042803 MtrunA17_Chr4g0018951 37.879 132 66 3 17 135 27 155 1.37e-22 89.0
MsaG042803 MtrunA17_Chr3g0089151 51.948 77 37 0 2 78 9 85 3.37e-22 86.7
MsaG042803 MtrunA17_Chr2g0300441 35.714 154 84 2 2 140 9 162 3.77e-22 89.4
MsaG042803 MtrunA17_Chr8g0379021 37.226 137 78 4 2 136 12 142 3.81e-22 87.8
MsaG042803 MtrunA17_Chr2g0317451 53.247 77 36 0 2 78 9 85 4.50e-22 89.0
MsaG042803 MtrunA17_Chr2g0317481 53.247 77 36 0 2 78 9 85 4.75e-22 89.0
MsaG042803 MtrunA17_Chr2g0300421 41.441 111 59 2 2 107 9 118 4.27e-21 85.1
MsaG042803 MtrunA17_Chr1g0206691 41.593 113 57 2 18 125 8 116 1.12e-20 85.1
MsaG042803 MtrunA17_Chr5g0404951 53.125 64 30 0 1 64 1 64 1.62e-19 82.0
MsaG042803 MtrunA17_Chr4g0020221 52.174 69 33 0 1 69 1 69 3.95e-19 81.6
MsaG042803 MtrunA17_Chr1g0187351 54.839 62 28 0 11 72 1 62 1.20e-18 75.9
MsaG042803 MtrunA17_Chr5g0427401 48.611 72 37 0 1 72 1 72 3.54e-18 78.6
MsaG042803 MtrunA17_Chr7g0238991 55.556 63 28 0 16 78 35 97 8.00e-18 78.2
MsaG042803 MtrunA17_Chr4g0071601 47.436 78 41 0 1 78 11 88 2.46e-17 75.5
MsaG042803 MtrunA17_Chr8g0380021 34.862 109 71 0 1 109 17 125 3.34e-17 76.3
MsaG042803 MtrunA17_Chr2g0279821 40.230 87 51 1 1 87 1 86 5.96e-17 75.5
MsaG042803 MtrunA17_Chr5g0427921 55.000 60 27 0 1 60 1 60 6.16e-17 71.2
MsaG042803 MtrunA17_Chr4g0049901 38.462 117 63 2 1 108 27 143 7.40e-17 75.1
MsaG042803 MtrunA17_Chr3g0097101 49.275 69 35 0 1 69 16 84 7.49e-17 75.5
MsaG042803 MtrunA17_Chr8g0351041 36.893 103 62 2 1 101 1 102 8.51e-17 73.6
MsaG042803 MtrunA17_Chr5g0411691 47.826 69 36 0 1 69 1 69 9.99e-17 75.1
MsaG042803 MtrunA17_Chr1g0173161 46.250 80 40 1 1 80 1 77 1.29e-16 70.9
MsaG042803 MtrunA17_Chr4g0049541 44.928 69 38 0 1 69 1 69 1.86e-16 73.9
MsaG042803 MtrunA17_Chr8g0351051 46.377 69 37 0 1 69 1 69 1.98e-16 74.3
MsaG042803 MtrunA17_Chr3g0077501 44.928 69 38 0 1 69 1 69 2.94e-16 73.6
MsaG042803 MtrunA17_Chr3g0111931 50.820 61 30 0 18 78 6 66 5.11e-16 70.1
MsaG042803 MtrunA17_Chr8g0351031 36.893 103 62 2 1 101 1 102 5.28e-16 72.8
MsaG042803 MtrunA17_Chr2g0284911 33.028 109 73 0 1 109 16 124 5.32e-16 73.2
MsaG042803 MtrunA17_Chr3g0111841 52.727 55 26 0 11 65 5 59 6.67e-16 68.6
MsaG042803 MtrunA17_Chr3g0142191 48.611 72 35 1 1 72 1 70 9.36e-16 72.0
MsaG042803 MtrunA17_Chr5g0412271 42.857 84 47 1 1 84 1 83 1.38e-15 71.6
MsaG042803 MtrunA17_Chr7g0246431 33.663 101 67 0 1 101 1 101 1.47e-15 71.2
MsaG042803 MtrunA17_Chr5g0412461 42.857 84 47 1 1 84 1 83 1.60e-15 71.6
MsaG042803 MtrunA17_Chr1g0164791 46.479 71 36 1 1 69 1 71 5.46e-15 70.1
MsaG042803 MtrunA17_Chr4g0044071 55.172 58 26 0 1 58 1 58 6.55e-15 67.4
MsaG042803 MtrunA17_Chr4g0057151 43.478 69 39 0 1 69 1 69 7.55e-15 69.3
MsaG042803 MtrunA17_Chr2g0308251 40.698 86 46 2 1 85 1 82 1.18e-14 65.9
MsaG042803 MtrunA17_Chr4g0018421 44.444 72 39 1 1 71 1 72 1.49e-14 68.6
MsaG042803 MtrunA17_Chr5g0420091 50.877 57 28 0 1 57 1 57 1.59e-14 68.6
MsaG042803 MtrunA17_Chr7g0220111 50.877 57 28 0 1 57 1 57 2.25e-14 68.6
MsaG042803 MtrunA17_Chr7g0246381 47.059 68 31 1 1 63 1 68 2.46e-14 64.7
MsaG042803 MtrunA17_Chr1g0159661 35.345 116 58 3 1 114 1 101 2.61e-14 67.4
MsaG042803 MtrunA17_Chr4g0061671 48.276 58 30 0 1 58 1 58 2.85e-14 67.4
MsaG042803 MtrunA17_Chr1g0204111 43.662 71 40 0 1 71 17 87 3.33e-14 68.2
MsaG042803 MtrunA17_Chr5g0425191 56.140 57 25 0 1 57 1 57 3.74e-14 65.1
MsaG042803 MtrunA17_Chr8g0377561 50.877 57 28 0 1 57 1 57 4.64e-14 64.7
MsaG042803 MtrunA17_Chr4g0061691 36.170 94 47 2 1 81 1 94 5.15e-14 67.4
MsaG042803 MtrunA17_Chr3g0122251 52.632 57 27 0 1 57 1 57 6.19e-14 67.4
MsaG042803 MtrunA17_Chr8g0366231 41.667 72 39 1 1 72 1 69 6.31e-14 67.4
MsaG042803 MtrunA17_Chr6g0455511 50.877 57 28 0 1 57 1 57 9.33e-14 67.0
MsaG042803 MtrunA17_Chr7g0220121 38.356 73 44 1 1 72 1 73 1.36e-13 66.6
MsaG042803 MtrunA17_Chr3g0125241 41.538 65 38 0 1 65 26 90 1.67e-13 65.9
MsaG042803 MtrunA17_Chr5g0420081 45.614 57 31 0 1 57 1 57 1.88e-13 65.9
MsaG042803 MtrunA17_Chr3g0134451 42.254 71 40 1 1 70 1 71 1.90e-13 67.0
MsaG042803 MtrunA17_Chr8g0345001 36.893 103 54 2 20 122 36 127 2.24e-13 65.1
MsaG042803 MtrunA17_Chr6g0474371 40.278 72 42 1 1 71 1 72 9.77e-13 63.5
MsaG042803 MtrunA17_Chr3g0093131 42.466 73 33 2 19 82 36 108 1.22e-12 63.2
MsaG042803 MtrunA17_Chr5g0417661 50.000 54 27 0 1 54 56 109 1.78e-12 61.2
MsaG042803 MtrunA17_Chr3g0111831 52.083 48 23 0 18 65 20 67 1.99e-12 60.1
MsaG042803 MtrunA17_Chr1g0166611 60.870 46 18 0 13 58 17 62 2.01e-12 61.2
MsaG042803 MtrunA17_Chr4g0025531 31.250 96 54 2 19 108 26 115 1.37e-11 60.8
MsaG042803 MtrunA17_Chr4g0060841 30.075 133 66 2 1 106 1 133 1.76e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042803 AT2G34440.1 38.596 171 92 2 1 158 1 171 4.55e-35 121
MsaG042803 AT3G66656.1 48.819 127 59 2 1 121 1 127 1.46e-31 112
MsaG042803 AT2G24840.1 42.149 121 65 2 1 117 62 181 5.67e-28 105
MsaG042803 AT5G60440.1 43.662 142 69 4 2 136 7 144 4.03e-27 103
MsaG042803 AT1G01530.1 39.474 152 84 3 1 148 6 153 7.12e-25 97.1
MsaG042803 AT4G36590.1 38.554 166 77 5 2 157 7 157 1.67e-24 95.9
MsaG042803 AT1G65360.1 38.621 145 70 4 1 136 6 140 3.90e-22 89.4
MsaG042803 AT1G72350.1 40.496 121 65 3 2 122 43 156 2.71e-20 84.3
MsaG042803 AT1G47760.1 31.056 161 101 3 1 154 1 158 9.14e-20 82.0
MsaG042803 AT3G61120.1 44.578 83 44 1 1 81 1 83 2.88e-19 82.0
MsaG042803 AT4G24540.1 40.230 87 52 0 1 87 1 87 4.96e-19 81.3
MsaG042803 AT5G65070.4 39.496 119 68 4 1 116 1 118 5.02e-19 79.3
MsaG042803 AT5G65070.1 37.857 140 80 5 1 134 1 139 1.34e-18 79.3
MsaG042803 AT5G13790.2 37.705 122 54 1 1 122 1 100 1.83e-18 80.5
MsaG042803 AT5G13790.1 40.206 97 58 0 1 97 1 97 3.53e-18 79.7
MsaG042803 AT3G57390.3 50.725 69 34 0 1 69 1 69 7.75e-18 78.2
MsaG042803 AT1G29962.1 45.833 72 39 0 2 73 8 79 8.54e-18 77.0
MsaG042803 AT1G28460.1 46.377 69 37 0 2 70 8 76 8.56e-18 77.0
MsaG042803 AT3G57390.1 50.725 69 34 0 1 69 1 69 1.33e-17 77.8
MsaG042803 AT3G57230.2 46.377 69 37 0 1 69 1 69 1.37e-17 75.5
MsaG042803 AT4G22950.2 47.826 69 36 0 1 69 1 69 2.36e-17 75.5
MsaG042803 AT3G57230.1 46.377 69 37 0 1 69 1 69 3.03e-17 76.6
MsaG042803 AT3G57230.4 46.377 69 37 0 1 69 1 69 3.03e-17 76.6
MsaG042803 AT2G22540.3 39.423 104 61 2 1 103 1 103 3.65e-17 76.6
MsaG042803 AT2G22540.1 39.423 104 61 2 1 103 1 103 3.65e-17 76.6
MsaG042803 AT5G65080.3 35.915 142 85 3 1 136 8 149 4.48e-17 75.1
MsaG042803 AT2G45650.1 46.377 69 37 0 1 69 1 69 6.24e-17 76.3
MsaG042803 AT2G45660.2 34.286 105 69 0 1 105 1 105 6.82e-17 73.9
MsaG042803 AT5G65070.2 40.426 94 54 1 1 94 1 92 6.90e-17 75.5
MsaG042803 AT4G09960.2 38.462 91 51 1 1 91 1 86 7.52e-17 75.1
MsaG042803 AT4G09960.6 38.462 91 51 1 1 91 2 87 7.90e-17 75.5
MsaG042803 AT4G09960.1 38.462 91 51 1 1 91 1 86 7.94e-17 75.5
MsaG042803 AT5G65070.5 40.426 94 54 1 1 94 1 92 8.53e-17 75.1
MsaG042803 AT2G22630.1 49.275 69 35 0 1 69 1 69 1.08e-16 75.1
MsaG042803 AT2G22630.2 49.275 69 35 0 1 69 1 69 1.08e-16 75.1
MsaG042803 AT3G04100.1 43.421 76 40 1 2 74 14 89 1.15e-16 74.7
MsaG042803 AT4G09960.5 38.462 91 51 1 1 91 11 96 1.24e-16 75.1
MsaG042803 AT4G09960.3 38.462 91 51 1 1 91 27 112 1.53e-16 75.1
MsaG042803 AT1G17310.1 58.621 58 22 1 17 74 63 118 1.78e-16 74.3
MsaG042803 AT4G09960.4 38.462 91 51 1 1 91 96 181 1.82e-16 75.9
MsaG042803 AT5G10140.2 54.386 57 26 0 1 57 1 57 1.91e-16 73.2
MsaG042803 AT4G22950.3 47.826 69 36 0 1 69 1 69 1.94e-16 74.3
MsaG042803 AT4G22950.1 47.826 69 36 0 1 69 1 69 1.94e-16 74.3
MsaG042803 AT1G17310.2 58.621 58 22 1 17 74 74 129 2.36e-16 73.9
MsaG042803 AT2G45660.1 34.286 105 69 0 1 105 1 105 2.73e-16 73.6
MsaG042803 AT5G10140.3 53.448 58 27 0 1 58 1 58 3.53e-16 72.8
MsaG042803 AT5G10140.4 54.386 57 26 0 1 57 1 57 3.75e-16 72.8
MsaG042803 AT4G37940.1 46.377 69 37 0 1 69 1 69 3.76e-16 73.6
MsaG042803 AT5G10140.1 54.386 57 26 0 1 57 1 57 4.49e-16 72.8
MsaG042803 AT5G51870.2 46.377 69 37 0 1 69 1 69 4.53e-16 72.0
MsaG042803 AT3G54340.1 50.000 62 31 0 1 62 1 62 4.66e-16 73.6
MsaG042803 AT5G51870.1 46.377 69 37 0 1 69 1 69 4.72e-16 72.8
MsaG042803 AT4G37940.4 46.377 69 37 0 1 69 1 69 5.37e-16 72.8
MsaG042803 AT5G65070.3 45.070 71 37 1 1 69 1 71 5.73e-16 73.2
MsaG042803 AT5G51870.5 46.377 69 37 0 1 69 24 92 6.70e-16 72.4
MsaG042803 AT5G51870.4 46.377 69 37 0 1 69 1 69 8.46e-16 72.4
MsaG042803 AT4G37940.3 43.210 81 42 1 1 77 1 81 9.63e-16 71.2
MsaG042803 AT5G51870.3 46.377 69 37 0 1 69 11 79 1.40e-15 72.0
MsaG042803 AT2G22540.2 56.364 55 24 0 1 55 1 55 1.82e-15 72.0
MsaG042803 AT5G51860.2 46.377 69 37 0 1 69 1 69 2.11e-15 71.2
MsaG042803 AT5G51860.1 46.377 69 37 0 1 69 1 69 2.19e-15 71.2
MsaG042803 AT5G65060.3 56.364 55 24 0 1 55 1 55 2.75e-15 70.5
MsaG042803 AT2G42830.2 38.298 94 53 2 1 94 16 104 2.81e-15 71.6
MsaG042803 AT2G42830.1 44.928 69 38 0 1 69 16 84 2.85e-15 71.6
MsaG042803 AT4G11880.2 53.448 58 27 0 1 58 1 58 2.88e-15 70.1
MsaG042803 AT4G11880.3 53.448 58 27 0 1 58 1 58 2.88e-15 70.1
MsaG042803 AT3G58780.1 38.298 94 53 2 1 94 16 104 3.45e-15 71.2
MsaG042803 AT5G20240.2 49.206 63 32 0 1 63 1 63 3.69e-15 69.3
MsaG042803 AT3G58780.5 38.298 94 53 2 1 94 22 110 3.72e-15 71.2
MsaG042803 AT1G22130.1 49.296 71 35 1 1 70 1 71 4.13e-15 72.0
MsaG042803 AT5G65050.2 54.545 55 25 0 1 55 1 55 4.16e-15 69.7
MsaG042803 AT5G65060.1 56.364 55 24 0 1 55 1 55 4.51e-15 70.1
MsaG042803 AT5G65060.2 56.364 55 24 0 1 55 1 55 5.01e-15 69.7
MsaG042803 AT3G58780.2 40.698 86 38 1 1 73 16 101 5.88e-15 70.5
MsaG042803 AT5G23260.2 59.649 57 23 0 1 57 1 57 6.05e-15 70.9
MsaG042803 AT3G58780.4 38.298 94 53 2 1 94 16 104 6.06e-15 71.2
MsaG042803 AT5G23260.4 59.649 57 23 0 1 57 17 73 6.50e-15 70.9
MsaG042803 AT2G14210.1 53.448 58 27 0 1 58 1 58 6.57e-15 70.5
MsaG042803 AT5G23260.1 59.649 57 23 0 1 57 17 73 6.95e-15 70.9
MsaG042803 AT5G23260.3 59.649 57 23 0 1 57 1 57 7.01e-15 70.5
MsaG042803 AT5G62165.17 40.000 75 45 0 1 75 1 75 7.03e-15 68.6
MsaG042803 AT5G62165.12 40.000 75 45 0 1 75 1 75 7.03e-15 68.6
MsaG042803 AT5G62165.11 40.000 75 45 0 1 75 1 75 7.03e-15 68.6
MsaG042803 AT4G11880.4 53.448 58 27 0 1 58 1 58 7.20e-15 70.1
MsaG042803 AT4G11880.1 53.448 58 27 0 1 58 1 58 7.20e-15 70.1
MsaG042803 AT2G14210.2 53.448 58 27 0 1 58 1 58 7.77e-15 70.1
MsaG042803 AT1G71692.1 44.444 72 39 1 1 71 1 72 8.24e-15 69.7
MsaG042803 AT5G62165.14 40.000 75 45 0 1 75 1 75 1.05e-14 67.0
MsaG042803 AT5G20240.1 49.206 63 32 0 1 63 1 63 1.13e-14 69.3
MsaG042803 AT5G62165.6 40.000 75 45 0 1 75 1 75 1.19e-14 68.2
MsaG042803 AT5G62165.9 40.000 75 45 0 1 75 1 75 1.19e-14 68.2
MsaG042803 AT5G62165.7 40.000 75 45 0 1 75 1 75 1.19e-14 68.2
MsaG042803 AT5G62165.8 40.000 75 45 0 1 75 1 75 1.19e-14 68.2
MsaG042803 AT5G62165.13 40.000 75 45 0 1 75 1 75 1.19e-14 68.2
MsaG042803 AT2G03710.3 54.386 57 26 0 1 57 1 57 1.27e-14 68.6
MsaG042803 AT1G77980.1 47.887 71 36 1 1 70 1 71 1.46e-14 70.5
MsaG042803 AT4G18960.1 31.538 130 84 2 2 131 18 142 1.51e-14 69.7
MsaG042803 AT5G65050.3 54.545 55 25 0 1 55 1 55 1.67e-14 68.6
MsaG042803 AT5G65050.5 54.545 55 25 0 1 55 1 55 1.85e-14 68.2
MsaG042803 AT5G65050.1 54.545 55 25 0 1 55 1 55 1.94e-14 68.2
MsaG042803 AT5G62165.10 40.000 75 45 0 1 75 1 75 1.99e-14 68.6
MsaG042803 AT5G62165.4 40.000 75 45 0 1 75 1 75 1.99e-14 68.6
MsaG042803 AT5G62165.3 40.000 75 45 0 1 75 1 75 2.12e-14 68.6
MsaG042803 AT5G62165.1 40.000 75 45 0 1 75 1 75 2.12e-14 68.6
MsaG042803 AT5G62165.2 40.000 75 45 0 1 75 1 75 2.12e-14 68.6
MsaG042803 AT5G65080.2 50.000 56 28 0 1 56 8 63 3.70e-14 67.8
MsaG042803 AT3G30260.1 49.123 57 29 0 1 57 1 57 3.96e-14 68.6
MsaG042803 AT3G58780.3 50.847 59 29 0 1 59 16 74 4.48e-14 68.6
MsaG042803 AT2G03710.2 54.386 57 26 0 1 57 1 57 5.10e-14 68.2
MsaG042803 AT1G69120.2 43.056 72 38 1 1 72 1 69 5.21e-14 67.8
MsaG042803 AT2G03710.1 54.386 57 26 0 1 57 1 57 5.42e-14 68.2
MsaG042803 AT1G46408.1 48.148 81 35 4 1 74 1 81 7.21e-14 67.8
MsaG042803 AT5G15800.1 50.877 57 28 0 1 57 1 57 8.77e-14 67.4
MsaG042803 AT3G02310.2 50.877 57 28 0 1 57 1 57 9.67e-14 66.6
MsaG042803 AT1G69120.1 43.056 72 38 1 1 72 1 69 9.94e-14 67.4
MsaG042803 AT5G15800.2 50.877 57 28 0 1 57 1 57 1.27e-13 67.4
MsaG042803 AT1G28450.1 40.278 72 43 0 2 73 8 79 1.39e-13 65.9
MsaG042803 AT1G24260.1 50.877 57 28 0 1 57 1 57 1.61e-13 66.6
MsaG042803 AT5G60910.1 47.368 57 30 0 1 57 1 57 1.64e-13 66.6
MsaG042803 AT1G24260.3 50.877 57 28 0 1 57 1 57 1.66e-13 66.6
MsaG042803 AT1G24260.2 50.877 57 28 0 1 57 1 57 1.76e-13 66.6
MsaG042803 AT3G02310.1 50.877 57 28 0 1 57 1 57 1.84e-13 66.6
MsaG042803 AT1G26310.1 46.552 58 31 0 1 58 1 58 2.23e-13 66.6
MsaG042803 AT4G37435.1 32.022 178 83 8 1 152 1 166 3.21e-13 65.1
MsaG042803 AT1G18750.4 40.789 76 43 1 1 74 1 76 1.30e-12 65.1
MsaG042803 AT1G18750.3 40.789 76 43 1 1 74 1 76 1.34e-12 65.1
MsaG042803 AT1G18750.1 40.789 76 43 1 1 74 1 76 1.41e-12 65.1
MsaG042803 AT5G49490.1 44.444 72 36 1 3 70 46 117 1.92e-12 64.3
MsaG042803 AT5G38620.1 43.056 72 37 1 3 70 6 77 2.12e-12 64.3
MsaG042803 AT1G69540.1 40.000 75 44 1 1 74 1 75 2.79e-12 63.9
MsaG042803 AT5G04640.1 30.464 151 78 3 3 149 5 132 2.88e-12 63.9
MsaG042803 AT5G49420.1 42.857 77 39 2 3 74 8 84 2.94e-12 63.9
MsaG042803 AT1G69540.2 40.000 75 44 1 1 74 1 75 3.31e-12 63.9
MsaG042803 AT1G77950.3 38.028 71 43 1 1 70 1 71 1.06e-11 62.0
MsaG042803 AT1G77950.2 38.028 71 43 1 1 70 1 71 1.06e-11 62.0
MsaG042803 AT1G77950.1 38.028 71 43 1 1 70 1 71 1.06e-11 62.0
MsaG042803 AT1G77950.4 38.028 71 43 1 1 70 1 71 1.06e-11 62.0
MsaG042803 AT2G26320.1 44.828 58 32 0 1 58 17 74 1.98e-11 58.5
MsaG042803 AT1G77080.11 66.667 39 13 0 1 39 1 39 3.21e-11 59.3
MsaG042803 AT1G77080.5 66.667 39 13 0 1 39 1 39 3.46e-11 59.3
MsaG042803 AT2G03060.2 50.943 53 26 0 1 53 1 53 3.72e-11 60.8
MsaG042803 AT2G03060.3 50.943 53 26 0 1 53 1 53 3.73e-11 60.8
MsaG042803 AT2G03060.7 50.943 53 26 0 1 53 1 53 3.73e-11 60.8
MsaG042803 AT2G03060.1 50.943 53 26 0 1 53 1 53 3.73e-11 60.8
MsaG042803 AT1G77080.12 66.667 39 13 0 1 39 1 39 5.95e-11 58.2
MsaG042803 AT1G77080.4 66.667 39 13 0 1 39 1 39 8.14e-11 58.5

Find 50 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATACAACAATAGCAATTT+TGG 0.202437 8:+27836673 None:intergenic
GGGAATAAACCTTACTCTTT+TGG 0.260036 8:-27836644 MsaT042803.1:CDS
CCATCACCTTCTCATGTTGT+TGG 0.285658 8:+27836522 None:intergenic
TGTTAGAGGAAGGGGTTTCT+AGG 0.312060 8:+27836558 None:intergenic
AATGTGACTTGTCTCGCCTC+TGG 0.338519 8:+27836755 None:intergenic
ATTAATGGAGCTCAAGGATA+TGG 0.358058 8:-27836399 MsaT042803.1:CDS
GGAATGGAAAGATTCATTAA+TGG 0.365090 8:-27836414 MsaT042803.1:CDS
ATTCCTTAGGCTGGCTGAGT+AGG 0.404026 8:+27836432 None:intergenic
ACATTCTCAAAGCGCCGAAT+GGG 0.416565 8:-27836737 MsaT042803.1:CDS
TTCTAGGACATCGTTTAGAT+CGG 0.426926 8:+27836574 None:intergenic
GTTCAGATCATCTATGTTAG+AGG 0.427003 8:+27836544 None:intergenic
GCTATTGTTGTATTCTCTCC+CGG 0.429351 8:-27836665 MsaT042803.1:CDS
ATCATCTATGTTAGAGGAAG+GGG 0.438239 8:+27836550 None:intergenic
TGATATAGCTGAGGCTGAAA+AGG 0.444985 8:-27836498 MsaT042803.1:CDS
AATCTTTCCATTCCTTAGGC+TGG 0.454254 8:+27836423 None:intergenic
AAAAGAGTAAGGTTTATTCC+CGG 0.457419 8:+27836646 None:intergenic
TCTAGGACATCGTTTAGATC+GGG 0.468128 8:+27836575 None:intergenic
ATGTGACTTGTCTCGCCTCT+GGG 0.475748 8:+27836756 None:intergenic
TTCCTTAGGCTGGCTGAGTA+GGG 0.493210 8:+27836433 None:intergenic
CACATTCTCAAAGCGCCGAA+TGG 0.503482 8:-27836738 MsaT042803.1:CDS
CCAGGGTGGCCAAAAGAGTA+AGG 0.504633 8:+27836635 None:intergenic
CTCGCAAAGGAGCCCGTGGT+TGG 0.507286 8:-27836329 MsaT042803.1:CDS
TATGCTAAAAGAATACAAAT+CGG 0.512468 8:-27836456 MsaT042803.1:CDS
ACGAGCTTGCCATCTTGTGT+GGG 0.513990 8:-27836697 MsaT042803.1:CDS
AATGAATCTTTCCATTCCTT+AGG 0.516915 8:+27836419 None:intergenic
AACGAGCTTGCCATCTTGTG+TGG 0.526962 8:-27836698 MsaT042803.1:CDS
AGATTCATTAATGGAGCTCA+AGG 0.527990 8:-27836405 MsaT042803.1:CDS
CTATTGTTGTATTCTCTCCC+GGG 0.529578 8:-27836664 MsaT042803.1:CDS
TGAGGCTGAAAAGGAAGATA+AGG 0.530489 8:-27836489 MsaT042803.1:CDS
GACGCAATAGCATCAACACC+AGG 0.542737 8:+27836617 None:intergenic
GGCCCTACTCAGCCAGCCTA+AGG 0.543600 8:-27836435 MsaT042803.1:CDS
AAAGAGTAAGGTTTATTCCC+GGG 0.547640 8:+27836647 None:intergenic
ACAATTAACTCATTATGGGT+CGG 0.550393 8:-27836808 None:intergenic
CTCCTTTGCGAGGAGCATCA+TGG 0.550709 8:+27836340 None:intergenic
CAACCACGGGCTCCTTTGCG+AGG 0.553129 8:+27836330 None:intergenic
AGATCATCTATGTTAGAGGA+AGG 0.556275 8:+27836548 None:intergenic
GATCATCTATGTTAGAGGAA+GGG 0.557711 8:+27836549 None:intergenic
AACCAAGTCACAGAAAAGAA+AGG 0.564249 8:-27836299 MsaT042803.1:CDS
TACTCAGCCAGCCTAAGGAA+TGG 0.565385 8:-27836430 MsaT042803.1:CDS
GCTCCTCGCAAAGGAGCCCG+TGG 0.600673 8:-27836333 MsaT042803.1:CDS
GTCCATGATGCTCCTCGCAA+AGG 0.601271 8:-27836342 MsaT042803.1:CDS
TCTGAACCAACAACATGAGA+AGG 0.616384 8:-27836528 MsaT042803.1:CDS
AAAGGAAGATAAGGCCAATG+AGG 0.641735 8:-27836480 MsaT042803.1:CDS
GCGCAAAATTGAGATTGCGA+TGG 0.644560 8:-27836786 MsaT042803.1:CDS
CATTCTCAAAGCGCCGAATG+GGG 0.649352 8:-27836736 MsaT042803.1:CDS
CGAGCTTGCCATCTTGTGTG+GGG 0.663768 8:-27836696 MsaT042803.1:CDS
CCAACAACATGAGAAGGTGA+TGG 0.695579 8:-27836522 MsaT042803.1:CDS
GGTGATGGCTGATATAGCTG+AGG 0.696275 8:-27836507 MsaT042803.1:CDS
ACGCAATAGCATCAACACCA+GGG 0.722765 8:+27836618 None:intergenic
CAATAGCATCAACACCAGGG+TGG 0.755219 8:+27836621 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 27836289 27836816 27836289 ID=MsaG042803
Chr8 mRNA 27836289 27836816 27836289 ID=MsaT042803.1;Parent=MsaG042803
Chr8 exon 27836289 27836816 27836289 ID=MsaT042803.1.exon1;Parent=MsaT042803.1
Chr8 CDS 27836289 27836816 27836289 ID=cds.MsaT042803.1;Parent=MsaT042803.1
Gene Sequence

>MsaT042803.1

ATGGGTCGGCGCAAAATTGAGATTGCGATGGTGAAAAACCCAGAGGCGAGACAAGTCACATTCTCAAAGCGCCGAATGGGGTTATTCAAAAAAGCAAACGAGCTTGCCATCTTGTGTGGGGCCAAAATTGCTATTGTTGTATTCTCTCCCGGGAATAAACCTTACTCTTTTGGCCACCCTGGTGTTGATGCTATTGCGTCTAAATTTCTTCAACAAGAGCCCGATCTAAACGATGTCCTAGAAACCCCTTCCTCTAACATAGATGATCTGAACCAACAACATGAGAAGGTGATGGCTGATATAGCTGAGGCTGAAAAGGAAGATAAGGCCAATGAGGATATGCTAAAAGAATACAAATCGGCCCTACTCAGCCAGCCTAAGGAATGGAAAGATTCATTAATGGAGCTCAAGGATATGGTAAAATCACGTCTTTGTGATTTAGATATATCACAGTCCATGATGCTCCTCGCAAAGGAGCCCGTGGTTGGAATTAAAAACCAAGTCACAGAAAAGAAAGGAAAATATTAA
Protein sequence

>MsaT042803.1

MGRRKIEIAMVKNPEARQVTFSKRRMGLFKKANELAILCGAKIAIVVFSPGNKPYSFGHPGVDAIASKFLQQEPDLNDVLETPSSNIDDLNQQHEKVMADIAEAEKEDKANEDMLKEYKSALLSQPKEWKDSLMELKDMVKSRLCDLDISQSMMLLAKEPVVGIKNQVTEKKGKY*