Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042815 | XP_013445290.2 | 86.275 | 408 | 47 | 2 | 1 | 400 | 1 | 407 | 0.0 | 731 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042815 | sp|Q5JK20|ARFD_ORYSJ | 48.864 | 352 | 163 | 8 | 15 | 355 | 19 | 364 | 1.76e-107 | 339 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042815 | tr|A0A072TQ39|A0A072TQ39_MEDTR | 85.960 | 349 | 40 | 2 | 60 | 400 | 1 | 348 | 0.0 | 619 |
Gene ID | Type | Classification |
---|---|---|
MsaG042815 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042815 | MtrunA17_Chr8g0356211 | 84.342 | 281 | 35 | 2 | 128 | 400 | 1 | 280 | 7.91e-176 | 494 |
MsaG042815 | MtrunA17_Chr8g0385791 | 48.066 | 362 | 171 | 7 | 3 | 356 | 47 | 399 | 4.47e-106 | 333 |
MsaG042815 | MtrunA17_Chr2g0276781 | 46.132 | 349 | 173 | 7 | 13 | 352 | 16 | 358 | 1.70e-97 | 306 |
MsaG042815 | MtrunA17_Chr8g0346711 | 45.299 | 351 | 176 | 10 | 14 | 355 | 23 | 366 | 8.24e-92 | 291 |
MsaG042815 | MtrunA17_Chr7g0239061 | 44.058 | 345 | 177 | 8 | 15 | 350 | 9 | 346 | 1.02e-88 | 283 |
MsaG042815 | MtrunA17_Chr4g0009751 | 44.444 | 342 | 174 | 8 | 20 | 352 | 19 | 353 | 2.72e-87 | 278 |
MsaG042815 | MtrunA17_Chr4g0029671 | 41.644 | 365 | 186 | 9 | 20 | 363 | 54 | 412 | 7.18e-86 | 279 |
MsaG042815 | MtrunA17_Chr4g0046371 | 40.730 | 356 | 181 | 9 | 17 | 352 | 35 | 380 | 1.88e-84 | 273 |
MsaG042815 | MtrunA17_Chr2g0282961 | 41.360 | 353 | 179 | 7 | 17 | 352 | 50 | 391 | 1.39e-82 | 266 |
MsaG042815 | MtrunA17_Chr2g0326281 | 40.710 | 366 | 178 | 9 | 20 | 352 | 56 | 415 | 1.62e-81 | 268 |
MsaG042815 | MtrunA17_Chr1g0156321 | 45.015 | 331 | 166 | 10 | 13 | 334 | 36 | 359 | 5.25e-78 | 259 |
MsaG042815 | MtrunA17_Chr5g0433301 | 41.551 | 361 | 192 | 11 | 1 | 350 | 8 | 360 | 1.12e-77 | 258 |
MsaG042815 | MtrunA17_Chr2g0285461 | 43.478 | 345 | 179 | 10 | 17 | 350 | 20 | 359 | 2.54e-77 | 258 |
MsaG042815 | MtrunA17_Chr8g0376771 | 42.733 | 344 | 182 | 10 | 17 | 350 | 20 | 358 | 2.03e-76 | 256 |
MsaG042815 | MtrunA17_Chr4g0070181 | 39.005 | 382 | 200 | 10 | 17 | 375 | 20 | 391 | 1.33e-75 | 256 |
MsaG042815 | MtrunA17_Chr3g0109391 | 41.860 | 344 | 186 | 9 | 17 | 350 | 23 | 362 | 1.98e-75 | 252 |
MsaG042815 | MtrunA17_Chr2g0301251 | 42.486 | 346 | 181 | 9 | 19 | 353 | 22 | 360 | 1.34e-74 | 253 |
MsaG042815 | MtrunA17_Chr8g0389081 | 41.040 | 346 | 180 | 10 | 19 | 349 | 31 | 367 | 1.44e-69 | 239 |
MsaG042815 | MtrunA17_Chr2g0326761 | 33.666 | 401 | 207 | 8 | 11 | 358 | 2 | 396 | 3.30e-65 | 222 |
MsaG042815 | MtrunA17_Chr4g0028971 | 34.321 | 405 | 197 | 10 | 20 | 363 | 12 | 408 | 6.91e-63 | 215 |
MsaG042815 | MtrunA17_Chr1g0199681 | 34.456 | 386 | 200 | 10 | 7 | 348 | 81 | 457 | 1.65e-61 | 212 |
MsaG042815 | MtrunA17_Chr1g0181211 | 32.401 | 429 | 221 | 13 | 9 | 374 | 16 | 438 | 1.64e-59 | 206 |
MsaG042815 | MtrunA17_Chr7g0264171 | 30.303 | 462 | 234 | 16 | 13 | 401 | 24 | 470 | 1.77e-52 | 186 |
MsaG042815 | MtrunA17_Chr3g0115271 | 30.079 | 379 | 210 | 9 | 14 | 348 | 13 | 380 | 5.86e-45 | 165 |
MsaG042815 | MtrunA17_Chr5g0417281 | 30.321 | 343 | 203 | 10 | 20 | 348 | 11 | 331 | 8.70e-44 | 160 |
MsaG042815 | MtrunA17_Chr7g0264161 | 31.975 | 319 | 182 | 8 | 29 | 331 | 2 | 301 | 1.63e-43 | 154 |
MsaG042815 | MtrunA17_Chr5g0424931 | 29.462 | 353 | 223 | 7 | 19 | 348 | 18 | 367 | 3.43e-43 | 159 |
MsaG042815 | MtrunA17_Chr2g0289221 | 31.464 | 321 | 192 | 9 | 20 | 331 | 20 | 321 | 8.06e-41 | 149 |
MsaG042815 | MtrunA17_Chr1g0178011 | 30.702 | 342 | 209 | 10 | 20 | 348 | 12 | 338 | 1.92e-40 | 150 |
MsaG042815 | MtrunA17_Chr5g0436761 | 27.933 | 358 | 223 | 11 | 20 | 365 | 12 | 346 | 2.83e-35 | 136 |
MsaG042815 | MtrunA17_Chr2g0277461 | 29.565 | 345 | 206 | 12 | 20 | 348 | 13 | 336 | 1.30e-32 | 128 |
MsaG042815 | MtrunA17_Chr5g0417211 | 27.726 | 321 | 207 | 8 | 20 | 332 | 12 | 315 | 1.04e-31 | 125 |
MsaG042815 | MtrunA17_Chr5g0425661 | 33.333 | 198 | 121 | 3 | 19 | 211 | 36 | 227 | 1.54e-28 | 112 |
MsaG042815 | MtrunA17_Chr5g0424741 | 25.789 | 380 | 222 | 16 | 19 | 353 | 11 | 375 | 5.03e-28 | 116 |
MsaG042815 | MtrunA17_Chr5g0424801 | 27.762 | 353 | 208 | 17 | 20 | 351 | 12 | 338 | 5.25e-26 | 108 |
MsaG042815 | MtrunA17_Chr5g0425261 | 27.324 | 355 | 211 | 17 | 20 | 353 | 12 | 340 | 5.87e-25 | 105 |
MsaG042815 | MtrunA17_Chr2g0277531 | 32.558 | 215 | 122 | 10 | 20 | 221 | 20 | 224 | 1.61e-24 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042815 | AT5G62000.2 | 47.414 | 348 | 171 | 6 | 17 | 356 | 58 | 401 | 1.15e-106 | 335 |
MsaG042815 | AT5G62000.5 | 47.414 | 348 | 171 | 6 | 17 | 356 | 58 | 401 | 1.15e-106 | 335 |
MsaG042815 | AT5G62000.3 | 47.414 | 348 | 171 | 6 | 17 | 356 | 58 | 401 | 1.15e-106 | 335 |
MsaG042815 | AT5G62000.1 | 47.414 | 348 | 171 | 6 | 17 | 356 | 58 | 401 | 1.15e-106 | 335 |
MsaG042815 | AT5G62000.4 | 47.414 | 348 | 171 | 6 | 17 | 356 | 58 | 401 | 1.48e-106 | 335 |
MsaG042815 | AT1G59750.4 | 43.539 | 356 | 186 | 8 | 3 | 350 | 7 | 355 | 4.07e-95 | 300 |
MsaG042815 | AT1G59750.2 | 43.539 | 356 | 186 | 8 | 3 | 350 | 7 | 355 | 5.12e-95 | 300 |
MsaG042815 | AT1G59750.1 | 43.539 | 356 | 186 | 8 | 3 | 350 | 7 | 355 | 5.87e-95 | 300 |
MsaG042815 | AT1G59750.3 | 43.539 | 356 | 186 | 8 | 3 | 350 | 7 | 355 | 5.87e-95 | 300 |
MsaG042815 | AT3G61830.1 | 43.590 | 351 | 183 | 8 | 8 | 350 | 13 | 356 | 1.38e-92 | 292 |
MsaG042815 | AT2G46530.1 | 43.314 | 344 | 182 | 7 | 15 | 351 | 16 | 353 | 5.98e-92 | 290 |
MsaG042815 | AT2G46530.3 | 43.314 | 344 | 182 | 7 | 15 | 351 | 37 | 374 | 1.51e-91 | 290 |
MsaG042815 | AT4G23980.2 | 42.857 | 357 | 183 | 11 | 17 | 359 | 9 | 358 | 1.78e-85 | 274 |
MsaG042815 | AT4G23980.1 | 42.857 | 357 | 183 | 11 | 17 | 359 | 9 | 358 | 2.03e-85 | 274 |
MsaG042815 | AT5G60450.2 | 42.614 | 352 | 172 | 8 | 19 | 349 | 40 | 382 | 2.23e-85 | 277 |
MsaG042815 | AT5G60450.1 | 42.614 | 352 | 172 | 8 | 19 | 349 | 64 | 406 | 3.40e-85 | 277 |
MsaG042815 | AT2G33860.1 | 38.527 | 353 | 189 | 6 | 17 | 352 | 51 | 392 | 5.84e-80 | 259 |
MsaG042815 | AT3G61830.2 | 43.087 | 311 | 163 | 7 | 47 | 350 | 2 | 305 | 2.19e-78 | 253 |
MsaG042815 | AT1G19220.1 | 43.103 | 348 | 180 | 10 | 17 | 353 | 20 | 360 | 4.09e-78 | 263 |
MsaG042815 | AT1G19850.1 | 43.895 | 344 | 171 | 13 | 19 | 348 | 53 | 388 | 9.20e-78 | 259 |
MsaG042815 | AT1G19850.2 | 43.895 | 344 | 171 | 13 | 19 | 348 | 42 | 377 | 1.08e-77 | 259 |
MsaG042815 | AT5G37020.2 | 42.442 | 344 | 184 | 9 | 17 | 350 | 19 | 358 | 3.91e-77 | 255 |
MsaG042815 | AT5G37020.1 | 42.442 | 344 | 184 | 9 | 17 | 350 | 19 | 358 | 1.07e-76 | 255 |
MsaG042815 | AT5G20730.3 | 41.143 | 350 | 187 | 11 | 16 | 353 | 20 | 362 | 2.61e-74 | 253 |
MsaG042815 | AT5G20730.2 | 41.261 | 349 | 187 | 10 | 16 | 353 | 20 | 361 | 3.60e-74 | 252 |
MsaG042815 | AT5G20730.1 | 41.143 | 350 | 187 | 11 | 16 | 353 | 20 | 362 | 3.87e-74 | 252 |
MsaG042815 | AT1G30330.3 | 41.860 | 344 | 186 | 9 | 17 | 350 | 22 | 361 | 1.62e-72 | 246 |
MsaG042815 | AT1G30330.2 | 41.860 | 344 | 186 | 9 | 17 | 350 | 22 | 361 | 1.62e-72 | 246 |
MsaG042815 | AT1G30330.1 | 41.860 | 344 | 186 | 9 | 17 | 350 | 20 | 359 | 1.72e-72 | 245 |
MsaG042815 | AT1G34310.1 | 37.714 | 350 | 195 | 11 | 7 | 348 | 18 | 352 | 5.54e-71 | 235 |
MsaG042815 | AT1G35540.1 | 38.576 | 337 | 188 | 9 | 20 | 348 | 27 | 352 | 7.51e-71 | 235 |
MsaG042815 | AT1G34170.1 | 38.017 | 363 | 199 | 12 | 1 | 348 | 1 | 352 | 1.26e-69 | 229 |
MsaG042815 | AT1G35240.1 | 38.279 | 337 | 189 | 10 | 20 | 348 | 27 | 352 | 4.32e-69 | 230 |
MsaG042815 | AT1G34410.1 | 37.685 | 337 | 191 | 10 | 20 | 348 | 27 | 352 | 2.84e-67 | 226 |
MsaG042815 | AT1G34390.1 | 38.279 | 337 | 187 | 11 | 20 | 348 | 27 | 350 | 5.57e-66 | 222 |
MsaG042815 | AT1G35520.1 | 37.092 | 337 | 193 | 10 | 20 | 348 | 27 | 352 | 1.03e-65 | 221 |
MsaG042815 | AT2G28350.2 | 34.715 | 386 | 187 | 9 | 17 | 348 | 7 | 381 | 2.30e-65 | 222 |
MsaG042815 | AT2G28350.1 | 34.715 | 386 | 187 | 9 | 17 | 348 | 7 | 381 | 3.97e-65 | 222 |
MsaG042815 | AT2G46530.2 | 43.933 | 239 | 123 | 5 | 118 | 351 | 34 | 266 | 1.70e-63 | 213 |
MsaG042815 | AT1G34170.2 | 37.222 | 360 | 180 | 12 | 1 | 348 | 1 | 326 | 7.11e-63 | 211 |
MsaG042815 | AT1G34170.3 | 37.222 | 360 | 180 | 12 | 1 | 348 | 1 | 326 | 3.44e-62 | 211 |
MsaG042815 | AT4G30080.1 | 34.409 | 372 | 194 | 11 | 20 | 348 | 19 | 383 | 2.91e-61 | 211 |
MsaG042815 | AT2G33860.2 | 42.194 | 237 | 129 | 3 | 121 | 352 | 2 | 235 | 2.48e-60 | 203 |
MsaG042815 | AT5G37020.3 | 44.492 | 236 | 122 | 5 | 121 | 350 | 31 | 263 | 4.59e-54 | 192 |
MsaG042815 | AT1G77850.1 | 30.978 | 368 | 204 | 8 | 21 | 348 | 20 | 377 | 6.19e-50 | 179 |
MsaG042815 | AT1G77850.2 | 30.978 | 368 | 204 | 8 | 21 | 348 | 20 | 377 | 6.64e-50 | 179 |
MsaG042815 | AT1G43950.1 | 41.089 | 202 | 112 | 4 | 20 | 220 | 27 | 222 | 5.75e-46 | 159 |
MsaG042815 | AT1G01030.2 | 37.500 | 96 | 59 | 1 | 115 | 210 | 50 | 144 | 4.25e-11 | 64.3 |
MsaG042815 | AT2G36080.4 | 36.190 | 105 | 63 | 2 | 121 | 221 | 38 | 142 | 4.58e-11 | 62.0 |
MsaG042815 | AT2G36080.2 | 36.190 | 105 | 63 | 2 | 121 | 221 | 38 | 142 | 4.58e-11 | 62.0 |
MsaG042815 | AT1G01030.1 | 37.500 | 96 | 59 | 1 | 115 | 210 | 50 | 144 | 5.59e-11 | 64.3 |
Find 104 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCAATTTGCTTTGGATTT+AGG | 0.166297 | 8:+28009849 | MsaT042815.1:CDS |
CATCTATCTGCATGTTGTTT+TGG | 0.245289 | 8:-28005612 | None:intergenic |
TGACATTATGATCACCTTCT+TGG | 0.264286 | 8:-28007793 | None:intergenic |
GGACAAACCCTCTCAATATT+TGG | 0.276281 | 8:-28008303 | None:intergenic |
TTAGAAGGCAAATGATAGTT+AGG | 0.299166 | 8:-28004994 | None:intergenic |
ATATCCACTTTGTGATATTC+AGG | 0.303834 | 8:-28008570 | None:intergenic |
CTAAAAGAGTAGATTTCATT+AGG | 0.304482 | 8:-28005540 | None:intergenic |
AGGGGAGAGAATGGTGAAAT+TGG | 0.305389 | 8:+28007375 | MsaT042815.1:intron |
GTTGTCCATGCTGTTTCTAT+TGG | 0.311077 | 8:+28007498 | MsaT042815.1:CDS |
TGAATATCACAAAGTGGATA+TGG | 0.327346 | 8:+28008572 | MsaT042815.1:CDS |
GCTAGGGCTTCAATTTGCTT+TGG | 0.339237 | 8:+28009842 | MsaT042815.1:intron |
GAGAATGGTGAAATTGGTAT+TGG | 0.352900 | 8:+28007381 | MsaT042815.1:CDS |
AGATAGATGCTTTCCCCATC+TGG | 0.359903 | 8:+28005626 | MsaT042815.1:CDS |
CCATGGTGGATTGAGCCCTT+TGG | 0.362112 | 8:+28008324 | MsaT042815.1:CDS |
TTTGGAATCTGATTCTAAAT+CGG | 0.362249 | 8:+28009887 | MsaT042815.1:CDS |
TTCTGAACCAGGCCACCTAA+TGG | 0.364231 | 8:-28008135 | None:intergenic |
AGAGCACACTTTCTTACTAA+TGG | 0.376281 | 8:+28007112 | MsaT042815.1:CDS |
TTATTTGATAAAGGGAGAAT+TGG | 0.387439 | 8:-28008375 | None:intergenic |
TAGTAAGTTGCTCACTTCAA+TGG | 0.390845 | 8:+28005560 | MsaT042815.1:CDS |
AGAATGGTGAAATTGGTATT+GGG | 0.394064 | 8:+28007382 | MsaT042815.1:CDS |
CTGTGTACATCCCTACGGTT+GGG | 0.399721 | 8:+28002972 | MsaT042815.1:CDS |
TATAGGTATGGTACAATAGT+TGG | 0.409092 | 8:+28008095 | MsaT042815.1:intron |
AATGCCCTTCAGCATAATCT+TGG | 0.414690 | 8:-28008352 | None:intergenic |
GATCTTGCATTGGTGGTTGA+AGG | 0.416950 | 8:-28006173 | None:intergenic |
GAGGACAATCATGCACTTCA+TGG | 0.417435 | 8:+28005516 | MsaT042815.1:CDS |
TATCTCACCAAGGGTGGTAT+TGG | 0.417596 | 8:-28007536 | None:intergenic |
ACCACCCTCATGATATTGTT+CGG | 0.418204 | 8:+28009943 | MsaT042815.1:CDS |
CATCTCCTCTTAGGTGCAAT+GGG | 0.419644 | 8:+28008272 | MsaT042815.1:intron |
GCCACTAGATCTTGCATTGG+TGG | 0.421362 | 8:-28006180 | None:intergenic |
TCTGAACCAGGCCACCTAAT+GGG | 0.429682 | 8:-28008134 | None:intergenic |
CAACTGTGGCATGCATGTTC+CGG | 0.431564 | 8:+28002947 | MsaT042815.1:CDS |
CACACTTTCTTACTAATGGT+TGG | 0.440725 | 8:+28007116 | MsaT042815.1:CDS |
CAGAGGAATCATAAATTCAA+AGG | 0.441039 | 8:-28007692 | None:intergenic |
AACTGAGTAGTCTTTCTCAA+TGG | 0.461873 | 8:-28007731 | None:intergenic |
CATCCCTACGGTTGGGGAGA+AGG | 0.464663 | 8:+28002979 | MsaT042815.1:CDS |
ATTGATCCCATTAGGTGGCC+TGG | 0.478400 | 8:+28008128 | MsaT042815.1:CDS |
AGTTGTGGGTGTTCAATTGA+AGG | 0.479455 | 8:+28005029 | MsaT042815.1:CDS |
TGTTATTGTAGGGGAGAGAA+TGG | 0.481096 | 8:+28007366 | MsaT042815.1:intron |
ATGAAGATATTGATCCCATT+AGG | 0.481523 | 8:+28008120 | MsaT042815.1:CDS |
ACATCTCCTCTTAGGTGCAA+TGG | 0.483251 | 8:+28008271 | MsaT042815.1:intron |
AGAGGAATCATAAATTCAAA+GGG | 0.491970 | 8:-28007691 | None:intergenic |
TTATTGTTATCAGATATAGC+TGG | 0.495204 | 8:+28008534 | MsaT042815.1:intron |
AAACATTCAACTTGGAGCAT+TGG | 0.497605 | 8:+28007470 | MsaT042815.1:CDS |
CCTGCTCTGAGTGTCCTTGA+GGG | 0.510377 | 8:-28003012 | None:intergenic |
ATGCCCTTCAGCATAATCTT+GGG | 0.510709 | 8:-28008351 | None:intergenic |
GGTGCATCTCGTTTAGTCTC+TGG | 0.510973 | 8:+28002786 | MsaT042815.1:CDS |
CCCTCAAGGACACTCAGAGC+AGG | 0.517846 | 8:+28003012 | MsaT042815.1:CDS |
TCTGTGTACATCCCTACGGT+TGG | 0.521590 | 8:+28002971 | MsaT042815.1:CDS |
TCACAAAGTGGATATGGACT+TGG | 0.522885 | 8:+28008578 | MsaT042815.1:CDS |
TGCATGAATCTCCAGGAAGA+AGG | 0.528511 | 8:-28007162 | None:intergenic |
AGGACATGCATGGAATTGAA+TGG | 0.531700 | 8:+28006205 | MsaT042815.1:CDS |
ATGGATTCTGCAGGAAGAGA+TGG | 0.534335 | 8:+28002765 | MsaT042815.1:CDS |
TCCATGTCCAATACCACCCT+TGG | 0.536464 | 8:+28007529 | MsaT042815.1:CDS |
ATCTTGCATTGGTGGTTGAA+GGG | 0.538894 | 8:-28006172 | None:intergenic |
CGTAGGGATGTACACAGATC+CGG | 0.546489 | 8:-28002966 | None:intergenic |
AAATAACTAACCTCGGGCAA+TGG | 0.548635 | 8:-28005177 | None:intergenic |
TATTGTTATCAGATATAGCT+GGG | 0.550188 | 8:+28008535 | MsaT042815.1:intron |
CATAATCTTGGGAGATCCAA+AGG | 0.553083 | 8:-28008340 | None:intergenic |
TCAAGTCAAAACATTCAACT+TGG | 0.553845 | 8:+28007462 | MsaT042815.1:CDS |
GAGAGAGAGATGGATTCTGC+AGG | 0.555133 | 8:+28002756 | None:intergenic |
ATTGAGAAAGACTACTCAGT+TGG | 0.556162 | 8:+28007733 | MsaT042815.1:CDS |
ATCTCCCAAGATTATGCTGA+AGG | 0.559989 | 8:+28008347 | MsaT042815.1:CDS |
TAAACTAAAACAAACCAGAT+GGG | 0.562205 | 8:-28005640 | None:intergenic |
TTCGCCACTAGATCTTGCAT+TGG | 0.562318 | 8:-28006183 | None:intergenic |
ATACATCTCCATTCTGAACC+AGG | 0.563789 | 8:-28008146 | None:intergenic |
ACCTGCTCTGAGTGTCCTTG+AGG | 0.564977 | 8:-28003013 | None:intergenic |
AAACCTTCTCCCCAACCGTA+GGG | 0.569220 | 8:-28002982 | None:intergenic |
TTCAGAATGGAGATGTATCA+AGG | 0.571681 | 8:+28008151 | MsaT042815.1:CDS |
GGACTAATCTTGTGACATGA+AGG | 0.574582 | 8:-28009973 | None:intergenic |
ATATTGAGAGGGTTTGTCCA+TGG | 0.576814 | 8:+28008307 | MsaT042815.1:CDS |
TGTGTACATCCCTACGGTTG+GGG | 0.579112 | 8:+28002973 | MsaT042815.1:CDS |
TTTCATACCAAATATTGAGA+GGG | 0.580552 | 8:+28008296 | MsaT042815.1:CDS |
CGGATCTGTGTACATCCCTA+CGG | 0.580588 | 8:+28002967 | MsaT042815.1:CDS |
AGACTACTCAGTTGGAAGGA+GGG | 0.584082 | 8:+28007741 | MsaT042815.1:CDS |
TAAACCTGAATATCACAAAG+TGG | 0.587495 | 8:+28008566 | MsaT042815.1:CDS |
TTAGGTGGCCTGGTTCAGAA+TGG | 0.591720 | 8:+28008138 | MsaT042815.1:CDS |
ATTTCATACCAAATATTGAG+AGG | 0.595944 | 8:+28008295 | MsaT042815.1:CDS |
ACCAAGGGTGGTATTGGACA+TGG | 0.602110 | 8:-28007530 | None:intergenic |
AAGACTACTCAGTTGGAAGG+AGG | 0.602756 | 8:+28007740 | MsaT042815.1:CDS |
TTGAGAGGGTTTGTCCATGG+TGG | 0.604041 | 8:+28008310 | MsaT042815.1:CDS |
AAAACCTTCTCCCCAACCGT+AGG | 0.604228 | 8:-28002983 | None:intergenic |
AGAAAGACTACTCAGTTGGA+AGG | 0.604367 | 8:+28007737 | MsaT042815.1:CDS |
CACATGTTGTCTAAAGTTGA+AGG | 0.605492 | 8:+28007766 | MsaT042815.1:CDS |
ATAATCTTGGGAGATCCAAA+GGG | 0.609525 | 8:-28008339 | None:intergenic |
AATGCAAGATCTAGTGGCGA+AGG | 0.612003 | 8:+28006185 | MsaT042815.1:CDS |
AACTTCCAATAGAAACAGCA+TGG | 0.614686 | 8:-28007503 | None:intergenic |
ACCACCAATGCAAGATCTAG+TGG | 0.615505 | 8:+28006179 | MsaT042815.1:CDS |
TACATTATTTCCATTGCCCG+AGG | 0.616439 | 8:+28005167 | MsaT042815.1:CDS |
CATTGGTATCTCACCAAGGG+TGG | 0.616532 | 8:-28007542 | None:intergenic |
CGAATCCGAACAATATCATG+AGG | 0.621579 | 8:-28009948 | None:intergenic |
AAGTTGAAGGATGTCCAAGA+AGG | 0.629809 | 8:+28007779 | MsaT042815.1:CDS |
AAACTAAAACAAACCAGATG+GGG | 0.640336 | 8:-28005639 | None:intergenic |
GCAACAAGAATATGCACTAG+AGG | 0.643251 | 8:+28005497 | MsaT042815.1:intron |
TCTCCCAAGATTATGCTGAA+GGG | 0.644859 | 8:+28008348 | MsaT042815.1:CDS |
AAGATATTGATCCCATTAGG+TGG | 0.658591 | 8:+28008123 | MsaT042815.1:CDS |
TCCGAACAATATCATGAGGG+TGG | 0.663274 | 8:-28009944 | None:intergenic |
CCAAAGGGCTCAATCCACCA+TGG | 0.672491 | 8:-28008324 | None:intergenic |
ACATCAACAAAATCACAACA+TGG | 0.673109 | 8:+28004966 | MsaT042815.1:CDS |
ATGATCTATGTGCTCAACTG+TGG | 0.678322 | 8:+28002933 | MsaT042815.1:CDS |
TCAATGGAAACAAGTACACA+TGG | 0.685853 | 8:+28005576 | MsaT042815.1:CDS |
AAAGTGGATATGGACTTGGA+AGG | 0.688175 | 8:+28008582 | MsaT042815.1:CDS |
CTAGTGGCGAAGGACATGCA+TGG | 0.702589 | 8:+28006195 | MsaT042815.1:CDS |
ATGGAAACAAGTACACATGG+TGG | 0.710626 | 8:+28005579 | MsaT042815.1:CDS |
GAATCCGAACAATATCATGA+GGG | 0.717041 | 8:-28009947 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 28002765 | 28009992 | 28002765 | ID=MsaG042815 |
Chr8 | mRNA | 28002765 | 28009992 | 28002765 | ID=MsaT042815.1;Parent=MsaG042815 |
Chr8 | exon | 28002765 | 28002807 | 28002765 | ID=MsaT042815.1.exon1;Parent=MsaT042815.1 |
Chr8 | CDS | 28002765 | 28002807 | 28002765 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28002933 | 28003033 | 28002933 | ID=MsaT042815.1.exon2;Parent=MsaT042815.1 |
Chr8 | CDS | 28002933 | 28003033 | 28002933 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28004952 | 28005050 | 28004952 | ID=MsaT042815.1.exon3;Parent=MsaT042815.1 |
Chr8 | CDS | 28004952 | 28005050 | 28004952 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28005132 | 28005188 | 28005132 | ID=MsaT042815.1.exon4;Parent=MsaT042815.1 |
Chr8 | CDS | 28005132 | 28005188 | 28005132 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28005498 | 28005647 | 28005498 | ID=MsaT042815.1.exon5;Parent=MsaT042815.1 |
Chr8 | CDS | 28005498 | 28005647 | 28005498 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28006165 | 28006249 | 28006165 | ID=MsaT042815.1.exon6;Parent=MsaT042815.1 |
Chr8 | CDS | 28006165 | 28006249 | 28006165 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28007104 | 28007194 | 28007104 | ID=MsaT042815.1.exon7;Parent=MsaT042815.1 |
Chr8 | CDS | 28007104 | 28007194 | 28007104 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28007377 | 28007550 | 28007377 | ID=MsaT042815.1.exon8;Parent=MsaT042815.1 |
Chr8 | CDS | 28007377 | 28007550 | 28007377 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28007684 | 28007800 | 28007684 | ID=MsaT042815.1.exon9;Parent=MsaT042815.1 |
Chr8 | CDS | 28007684 | 28007800 | 28007684 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28008100 | 28008172 | 28008100 | ID=MsaT042815.1.exon10;Parent=MsaT042815.1 |
Chr8 | CDS | 28008100 | 28008172 | 28008100 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28008285 | 28008426 | 28008285 | ID=MsaT042815.1.exon11;Parent=MsaT042815.1 |
Chr8 | CDS | 28008285 | 28008426 | 28008285 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28008547 | 28008603 | 28008547 | ID=MsaT042815.1.exon12;Parent=MsaT042815.1 |
Chr8 | CDS | 28008547 | 28008603 | 28008547 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Chr8 | exon | 28009847 | 28009992 | 28009847 | ID=MsaT042815.1.exon13;Parent=MsaT042815.1 |
Chr8 | CDS | 28009847 | 28009992 | 28009847 | ID=cds.MsaT042815.1;Parent=MsaT042815.1 |
Gene Sequence |
Protein sequence |