AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG042819

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042819 MtrunA17_Chr8g0356291 97.338 526 8 2 8 531 3 524 0.0 1060
MsaG042819 MtrunA17_Chr2g0309421 66.102 531 158 9 12 531 52 571 0.0 692
MsaG042819 MtrunA17_Chr2g0290691 63.741 433 143 6 108 531 177 604 0.0 565
MsaG042819 MtrunA17_Chr7g0250631 59.861 431 156 8 110 531 339 761 0.0 527
MsaG042819 MtrunA17_Chr8g0335351 60.460 435 151 7 110 531 345 771 1.44e-179 524
MsaG042819 MtrunA17_Chr7g0227331 64.359 390 122 6 108 485 205 589 3.94e-176 510
MsaG042819 MtrunA17_Chr6g0449401 58.933 431 132 7 96 485 224 650 5.57e-171 499
MsaG042819 MtrunA17_Chr7g0266031 51.373 510 216 12 7 490 345 848 1.41e-156 468
MsaG042819 MtrunA17_Chr3g0080101 53.864 427 178 7 110 531 390 802 6.03e-155 462
MsaG042819 MtrunA17_Chr1g0179101 58.122 394 150 6 110 495 445 831 2.74e-154 462
MsaG042819 MtrunA17_Chr4g0063311 50.505 396 172 6 110 485 66 457 7.33e-131 390
MsaG042819 MtrunA17_Chr2g0321101 51.724 377 156 6 116 477 68 433 2.33e-123 370
MsaG042819 MtrunA17_Chr2g0285711 48.205 390 169 6 109 485 56 425 1.08e-117 355
MsaG042819 MtrunA17_Chr8g0381091 47.570 391 173 8 109 485 51 423 3.32e-115 348
MsaG042819 MtrunA17_Chr8g0369091 44.030 402 173 8 110 510 572 922 2.67e-104 333
MsaG042819 MtrunA17_Chr2g0312641 44.330 388 180 9 104 484 61 419 1.70e-103 319
MsaG042819 MtrunA17_Chr4g0030361 43.799 379 166 4 110 488 282 613 4.73e-103 323
MsaG042819 MtrunA17_Chr2g0327561 44.327 379 175 4 110 488 601 943 1.09e-100 325
MsaG042819 MtrunA17_Chr8g0338741 39.891 366 190 10 132 485 14 361 1.18e-76 248
MsaG042819 MtrunA17_Chr4g0032761 37.113 388 189 9 133 489 10 373 8.81e-73 238
MsaG042819 MtrunA17_Chr2g0329011 38.398 362 182 8 129 485 8 333 1.89e-72 235
MsaG042819 MtrunA17_Chr7g0234641 36.088 363 206 8 133 486 8 353 1.06e-64 216
MsaG042819 MtrunA17_Chr5g0428981 33.159 383 207 9 117 496 745 1081 1.81e-55 201
MsaG042819 MtrunA17_Chr4g0018201 32.637 383 209 9 117 496 741 1077 1.59e-54 198
MsaG042819 MtrunA17_Chr1g0167351 33.146 356 200 9 138 489 110 431 4.04e-53 188
MsaG042819 MtrunA17_Chr6g0478601 31.452 372 209 7 129 496 102 431 1.17e-52 187
MsaG042819 MtrunA17_Chr1g0187581 32.961 358 197 10 138 489 117 437 6.83e-51 182
MsaG042819 MtrunA17_Chr3g0135951 33.430 344 190 9 138 473 94 406 1.24e-50 181
MsaG042819 MtrunA17_Chr1g0183651 31.707 369 208 10 127 489 109 439 6.68e-50 180
MsaG042819 MtrunA17_Chr2g0299781 33.724 341 193 9 138 473 113 425 2.66e-49 177
MsaG042819 MtrunA17_Chr7g0261491 32.044 362 198 11 138 489 120 443 9.31e-49 177
MsaG042819 MtrunA17_Chr1g0153321 30.337 356 206 9 127 476 97 416 3.53e-48 174
MsaG042819 MtrunA17_Chr1g0167311 29.700 367 223 7 125 489 102 435 7.20e-47 171
MsaG042819 MtrunA17_Chr1g0197721 36.538 156 97 1 127 282 40 193 2.04e-27 115
MsaG042819 MtrunA17_Chr1g0197721 35.417 144 87 3 343 482 191 332 2.82e-14 75.5
MsaG042819 MtrunA17_Chr7g0245031 41.216 148 85 1 138 285 148 293 1.43e-26 112
MsaG042819 MtrunA17_Chr7g0245031 41.593 113 63 2 362 473 299 409 1.13e-20 95.1
MsaG042819 MtrunA17_Chr4g0059751 38.462 156 85 4 138 285 89 241 5.86e-25 107
MsaG042819 MtrunA17_Chr4g0059751 36.207 116 71 2 364 478 249 362 1.42e-19 91.3
MsaG042819 MtrunA17_Chr3g0125381 33.333 186 105 4 284 469 41 207 1.70e-24 101
MsaG042819 MtrunA17_Chr8g0351491 25.602 332 168 6 138 469 16 268 1.70e-24 103
MsaG042819 MtrunA17_Chr6g0468751 26.316 342 172 9 128 468 9 271 6.12e-22 99.4
MsaG042819 MtrunA17_Chr6g0453681 26.239 343 173 9 128 469 9 272 7.31e-22 99.0
MsaG042819 MtrunA17_Chr4g0008561 26.211 351 180 12 121 468 2 276 2.02e-20 95.1
MsaG042819 MtrunA17_Chr4g0059951 23.041 434 203 12 47 474 29 337 1.10e-19 92.4
MsaG042819 MtrunA17_Chr4g0074811 27.139 339 159 13 138 468 91 349 1.60e-19 92.0
MsaG042819 MtrunA17_Chr8g0353621 24.471 331 171 7 138 468 10 261 3.06e-19 87.8
MsaG042819 MtrunA17_Chr3g0140631 29.412 187 118 3 138 312 37 221 3.85e-18 85.1
MsaG042819 MtrunA17_Chr2g0286501 32.680 153 95 3 135 287 46 190 1.10e-17 87.0
MsaG042819 MtrunA17_Chr8g0379091 32.121 165 105 3 123 285 11 170 1.52e-17 85.5
MsaG042819 MtrunA17_Chr2g0284031 32.919 161 101 3 127 285 20 175 2.76e-17 84.7
MsaG042819 MtrunA17_Chr2g0302431 31.098 164 111 2 122 285 4 165 8.39e-17 83.2
MsaG042819 MtrunA17_Chr3g0132591 36.054 147 84 3 144 289 118 255 1.10e-16 82.8
MsaG042819 MtrunA17_Chr4g0074111 28.652 178 121 2 129 306 9 180 1.75e-16 81.6
MsaG042819 MtrunA17_Chr5g0409421 27.679 336 186 12 137 469 3 284 2.54e-16 81.6
MsaG042819 MtrunA17_Chr2g0304111 29.814 161 108 2 128 285 10 168 3.05e-16 81.3
MsaG042819 MtrunA17_Chr6g0486661 33.582 134 83 4 364 494 912 1042 4.04e-16 82.0
MsaG042819 MtrunA17_Chr3g0107051 32.450 151 99 1 135 285 18 165 6.91e-16 80.1
MsaG042819 MtrunA17_Chr4g0013131 30.769 156 105 1 130 285 4 156 9.86e-16 79.7
MsaG042819 MtrunA17_Chr4g0025671 28.947 152 102 3 137 285 7 155 3.36e-15 79.0
MsaG042819 MtrunA17_Chr8g0346071 26.380 163 118 1 136 298 15 175 3.36e-15 77.8
MsaG042819 MtrunA17_Chr5g0432491 33.766 154 94 4 135 285 20 168 3.86e-15 77.8
MsaG042819 MtrunA17_Chr1g0200601 31.818 154 99 3 137 286 29 180 3.88e-15 78.2
MsaG042819 MtrunA17_Chr5g0441691 32.026 153 98 3 138 286 68 218 4.18e-15 78.2
MsaG042819 MtrunA17_Chr3g0098951 29.843 191 116 7 103 286 55 234 5.27e-15 77.8
MsaG042819 MtrunA17_Chr8g0346081 25.455 165 121 1 136 300 15 177 5.67e-15 77.0
MsaG042819 MtrunA17_Chr5g0419441 27.632 152 107 2 138 289 239 387 5.75e-15 78.2
MsaG042819 MtrunA17_Chr0c02g0489761 23.810 336 176 11 138 469 78 337 7.49e-15 77.4
MsaG042819 MtrunA17_Chr1g0203881 32.500 160 101 4 130 285 34 190 9.99e-15 76.6
MsaG042819 MtrunA17_Chr5g0428031 27.333 150 107 1 136 285 7 154 1.09e-14 76.3
MsaG042819 MtrunA17_Chr3g0107011 28.000 175 116 2 132 306 8 172 1.58e-14 75.9
MsaG042819 MtrunA17_Chr2g0321841 28.289 152 103 3 137 285 3 151 1.84e-14 76.6
MsaG042819 MtrunA17_Chr2g0276831 26.531 343 168 14 142 468 14 288 1.93e-14 75.1
MsaG042819 MtrunA17_Chr4g0063881 26.974 152 109 1 134 285 7 156 3.00e-14 75.1
MsaG042819 MtrunA17_Chr4g0001331 28.313 166 116 1 120 285 2 164 3.18e-14 75.1
MsaG042819 MtrunA17_Chr4g0001331 36.220 127 69 5 343 468 159 274 2.32e-11 65.9
MsaG042819 MtrunA17_Chr3g0114511 30.065 153 100 3 133 285 29 174 3.83e-14 74.7
MsaG042819 MtrunA17_Chr1g0205421 30.769 143 96 1 142 284 16 155 3.95e-14 74.7
MsaG042819 MtrunA17_Chr1g0190831 28.667 150 105 2 137 285 3 151 5.00e-14 74.7
MsaG042819 MtrunA17_Chr2g0330211 23.714 350 197 9 133 469 13 305 7.07e-14 74.3
MsaG042819 MtrunA17_Chr3g0130151 29.762 168 114 2 130 295 236 401 7.78e-14 74.3
MsaG042819 MtrunA17_Chr5g0405421 30.263 152 102 2 138 285 99 250 1.00e-13 73.9
MsaG042819 MtrunA17_Chr1g0188991 31.902 163 107 3 124 285 1 160 1.16e-13 73.9
MsaG042819 MtrunA17_Chr1g0170281 30.811 185 116 6 107 286 91 268 1.16e-13 73.6
MsaG042819 MtrunA17_Chr8g0369451 26.786 336 189 12 137 469 3 284 1.19e-13 73.2
MsaG042819 MtrunA17_Chr7g0272841 34.416 154 92 4 138 285 68 218 1.41e-13 73.6
MsaG042819 MtrunA17_Chr1g0185221 28.289 152 103 3 137 285 3 151 1.43e-13 73.6
MsaG042819 MtrunA17_Chr4g0047191 36.634 101 64 0 185 285 94 194 2.08e-13 71.6
MsaG042819 MtrunA17_Chr4g0047211 36.634 101 64 0 185 285 89 189 2.28e-13 71.6
MsaG042819 MtrunA17_Chr1g0170551 34.906 106 63 2 367 472 162 261 2.30e-13 73.2
MsaG042819 MtrunA17_Chr1g0170551 28.125 160 111 3 138 297 7 162 4.43e-12 69.3
MsaG042819 MtrunA17_Chr7g0244521 29.054 148 102 1 138 285 12 156 2.45e-13 72.4
MsaG042819 MtrunA17_Chr1g0202831 34.000 150 87 5 142 285 415 558 2.74e-13 72.8
MsaG042819 MtrunA17_Chr3g0133541 32.237 152 100 2 136 285 305 455 2.87e-13 72.4
MsaG042819 MtrunA17_Chr1g0190131 28.082 146 101 2 138 282 9 151 2.97e-13 70.1
MsaG042819 MtrunA17_Chr1g0190131 33.333 102 62 2 369 468 167 264 3.66e-11 63.9
MsaG042819 MtrunA17_Chr7g0258051 23.077 273 185 9 138 389 16 284 3.07e-13 72.4
MsaG042819 MtrunA17_Chr1g0188031 28.931 159 97 4 135 285 17 167 3.09e-13 71.6
MsaG042819 MtrunA17_Chr1g0150321 29.677 155 106 1 131 285 6 157 3.13e-13 71.6
MsaG042819 MtrunA17_Chr4g0033371 32.544 169 105 6 122 285 57 221 3.58e-13 72.0
MsaG042819 MtrunA17_Chr5g0444171 31.373 153 99 4 138 286 92 242 3.71e-13 72.0
MsaG042819 MtrunA17_Chr5g0441011 28.387 155 99 2 136 285 11 158 3.94e-13 71.6
MsaG042819 MtrunA17_Chr8g0385341 30.065 153 101 3 138 286 30 180 4.19e-13 71.6
MsaG042819 MtrunA17_Chr2g0284011 30.667 150 97 3 138 285 12 156 4.65e-13 71.2
MsaG042819 MtrunA17_Chr7g0260191 26.667 150 108 2 137 285 3 151 4.77e-13 71.6
MsaG042819 MtrunA17_Chr1g0157131 31.373 153 99 3 138 286 74 224 4.93e-13 71.6
MsaG042819 MtrunA17_Chr5g0402551 29.091 275 169 12 26 285 24 287 4.96e-13 71.6
MsaG042819 MtrunA17_Chr8g0387671 30.719 153 100 3 138 286 66 216 6.94e-13 70.9
MsaG042819 MtrunA17_Chr1g0173921 26.000 150 109 2 137 285 3 151 9.21e-13 71.2
MsaG042819 MtrunA17_Chr8g0384301 29.936 157 106 2 131 285 292 446 1.23e-12 70.5
MsaG042819 MtrunA17_Chr1g0173541 31.169 154 100 3 137 286 51 202 1.28e-12 70.1
MsaG042819 MtrunA17_Chr5g0448721 31.875 160 105 4 138 295 96 253 1.42e-12 70.1
MsaG042819 MtrunA17_Chr5g0444181 29.091 165 111 4 138 298 91 253 2.09e-12 67.4
MsaG042819 MtrunA17_Chr5g0432471 26.582 158 111 2 129 285 3 156 2.41e-12 69.3
MsaG042819 MtrunA17_Chr3g0127571 33.533 167 100 6 134 292 133 296 5.26e-12 68.6
MsaG042819 MtrunA17_Chr7g0256001 30.516 213 130 8 82 285 91 294 5.84e-12 68.2
MsaG042819 MtrunA17_Chr3g0091311 27.389 157 111 1 129 285 3 156 6.46e-12 65.9
MsaG042819 MtrunA17_Chr4g0051191 29.655 145 95 3 144 285 169 309 6.69e-12 67.8
MsaG042819 MtrunA17_Chr4g0045261 28.365 208 134 6 85 285 91 290 7.69e-12 67.8
MsaG042819 MtrunA17_Chr7g0267751 30.719 153 100 3 138 286 135 285 8.21e-12 67.8
MsaG042819 MtrunA17_Chr2g0333821 29.221 154 106 1 132 285 8 158 8.77e-12 67.4
MsaG042819 MtrunA17_Chr8g0386981 33.793 145 90 4 144 285 414 555 8.86e-12 68.2
MsaG042819 MtrunA17_Chr1g0166101 28.571 175 114 5 135 306 21 187 9.07e-12 67.0
MsaG042819 MtrunA17_Chr1g0176751 28.729 181 101 9 307 481 231 389 9.53e-12 67.4
MsaG042819 MtrunA17_Chr1g0176751 26.147 218 149 5 83 292 65 278 8.81e-11 64.7
MsaG042819 MtrunA17_Chr5g0402601 30.137 146 99 2 142 285 376 520 1.07e-11 67.4
MsaG042819 MtrunA17_Chr4g0000431 31.126 151 98 4 137 285 23 169 1.12e-11 67.4
MsaG042819 MtrunA17_Chr2g0317001 26.316 152 108 2 138 289 15 162 1.14e-11 67.4
MsaG042819 MtrunA17_Chr8g0374701 28.054 221 138 8 81 285 66 281 1.17e-11 67.4
MsaG042819 MtrunA17_Chr1g0176421 31.343 134 89 3 138 270 161 292 1.45e-11 67.0
MsaG042819 MtrunA17_Chr7g0274941 37.864 103 57 3 369 468 176 274 1.57e-11 65.5
MsaG042819 MtrunA17_Chr7g0274941 29.054 148 100 3 137 282 15 159 3.82e-11 64.3
MsaG042819 MtrunA17_Chr4g0055451 35.514 107 60 3 367 468 159 261 1.91e-11 65.5
MsaG042819 MtrunA17_Chr5g0399911 36.449 107 59 3 367 468 173 275 1.95e-11 65.9
MsaG042819 MtrunA17_Chr3g0131061 36.364 110 61 3 364 468 155 260 2.06e-11 65.5
MsaG042819 MtrunA17_Chr2g0277501 35.455 110 62 3 364 468 155 260 2.20e-11 65.5
MsaG042819 MtrunA17_Chr6g0453671 29.375 160 107 3 128 285 9 164 2.51e-11 65.5
MsaG042819 MtrunA17_Chr3g0132671 36.429 140 71 7 332 469 179 302 2.58e-11 65.9
MsaG042819 MtrunA17_Chr3g0129721 29.878 164 104 5 127 285 15 172 2.90e-11 64.7
MsaG042819 MtrunA17_Chr6g0450571 31.169 154 102 3 133 285 11 161 3.55e-11 65.9
MsaG042819 MtrunA17_Chr7g0218071 30.189 159 100 5 138 292 120 271 6.31e-11 65.1
MsaG042819 MtrunA17_Chr6g0479211 30.061 163 108 4 125 285 43 201 6.53e-11 63.9
MsaG042819 MtrunA17_Chr5g0397101 30.872 149 97 3 142 286 71 217 9.52e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042819 AT1G79250.1 60.702 570 157 12 13 531 2 555 0.0 643
MsaG042819 AT1G79250.3 60.702 570 157 12 13 531 2 555 0.0 643
MsaG042819 AT1G79250.2 60.702 570 157 12 13 531 2 555 0.0 643
MsaG042819 AT1G79250.4 60.702 570 157 12 13 531 2 555 0.0 643
MsaG042819 AT3G12690.1 65.890 472 133 7 73 531 121 577 0.0 612
MsaG042819 AT3G12690.3 65.890 472 133 7 73 531 121 577 0.0 612
MsaG042819 AT3G12690.2 65.890 472 133 7 73 531 121 577 0.0 612
MsaG042819 AT1G16440.1 69.159 428 112 9 110 531 86 499 0.0 589
MsaG042819 AT5G47750.1 61.772 429 151 7 110 531 164 586 0.0 534
MsaG042819 AT5G55910.2 61.949 431 145 7 108 531 80 498 0.0 527
MsaG042819 AT5G55910.1 61.949 431 145 7 108 531 80 498 0.0 527
MsaG042819 AT5G40030.1 62.005 429 141 9 110 531 86 499 0.0 525
MsaG042819 AT4G26610.1 65.985 391 115 6 110 490 96 478 0.0 521
MsaG042819 AT3G27580.2 63.990 386 130 5 109 487 152 535 6.49e-176 508
MsaG042819 AT3G27580.1 63.990 386 130 5 109 487 152 535 6.49e-176 508
MsaG042819 AT2G44830.2 55.603 464 193 7 78 531 305 765 1.06e-171 504
MsaG042819 AT2G44830.3 55.603 464 193 7 78 531 305 765 1.06e-171 504
MsaG042819 AT2G44830.1 55.603 464 193 7 78 531 305 765 1.06e-171 504
MsaG042819 AT5G03640.2 55.949 395 154 7 110 490 512 900 1.93e-150 454
MsaG042819 AT5G03640.1 55.949 395 154 7 110 490 512 900 1.93e-150 454
MsaG042819 AT3G52890.2 56.709 395 156 7 110 493 511 901 5.59e-146 443
MsaG042819 AT3G52890.4 56.709 395 156 7 110 493 511 901 5.59e-146 443
MsaG042819 AT3G52890.1 56.709 395 156 7 110 493 511 901 5.59e-146 443
MsaG042819 AT3G52890.3 56.709 395 156 7 110 493 511 901 5.59e-146 443
MsaG042819 AT2G36350.1 55.784 389 162 5 110 489 532 919 7.45e-146 443
MsaG042819 AT2G26700.1 45.330 439 164 7 110 486 59 483 5.12e-128 384
MsaG042819 AT3G44610.1 53.740 361 135 7 138 476 71 421 2.82e-122 367
MsaG042819 AT2G34650.1 48.718 390 160 8 109 485 49 411 1.38e-119 359
MsaG042819 AT5G58140.6 45.455 385 165 6 105 488 544 884 7.42e-108 343
MsaG042819 AT5G58140.7 45.455 385 165 6 105 488 544 884 7.42e-108 343
MsaG042819 AT5G58140.5 45.455 385 165 6 105 488 544 884 7.42e-108 343
MsaG042819 AT5G58140.2 45.455 385 165 6 105 488 544 884 7.42e-108 343
MsaG042819 AT5G58140.1 45.455 385 165 6 105 488 544 884 7.42e-108 343
MsaG042819 AT5G58140.3 45.889 377 159 6 105 480 544 876 2.74e-106 338
MsaG042819 AT3G14370.1 43.700 373 185 5 112 482 61 410 1.91e-100 311
MsaG042819 AT3G45780.2 44.063 379 170 4 110 488 636 972 1.12e-96 315
MsaG042819 AT3G45780.1 44.063 379 170 4 110 488 636 972 1.12e-96 315
MsaG042819 AT1G53700.1 44.297 377 180 7 112 484 66 416 1.07e-94 296
MsaG042819 AT1G51170.1 37.302 378 182 10 130 485 14 358 1.85e-71 234
MsaG042819 AT4G13000.1 35.813 363 196 9 133 490 15 345 2.64e-67 222
MsaG042819 AT3G20830.1 37.602 367 192 10 133 485 16 359 1.19e-66 221
MsaG042819 AT3G25250.1 34.417 369 207 8 130 489 9 351 4.43e-66 220
MsaG042819 AT1G45160.2 33.598 378 201 7 133 506 665 996 2.01e-54 198
MsaG042819 AT1G45160.1 33.598 378 201 7 133 506 665 996 3.11e-54 197
MsaG042819 AT1G48490.4 31.522 368 200 8 133 496 824 1143 6.71e-52 191
MsaG042819 AT1G48490.3 31.522 368 200 8 133 496 823 1142 6.77e-52 191
MsaG042819 AT1G48490.2 31.522 368 200 8 133 496 823 1142 6.77e-52 191
MsaG042819 AT1G48490.1 31.522 368 200 8 133 496 823 1142 6.77e-52 191
MsaG042819 AT1G30640.3 31.044 364 216 8 127 486 16 348 2.91e-51 182
MsaG042819 AT3G17850.1 31.232 349 197 6 138 485 882 1188 3.40e-51 189
MsaG042819 AT1G30640.2 31.044 364 216 8 127 486 109 441 3.49e-51 184
MsaG042819 AT1G30640.1 31.044 364 216 8 127 486 109 441 3.49e-51 184
MsaG042819 AT3G23310.1 32.123 358 202 10 138 489 120 442 7.67e-51 183
MsaG042819 AT5G62310.1 30.769 364 203 8 138 496 754 1073 2.59e-50 186
MsaG042819 AT4G14350.2 31.564 358 202 10 138 489 119 439 1.35e-49 179
MsaG042819 AT4G14350.1 31.564 358 202 10 138 489 119 439 1.35e-49 179
MsaG042819 AT4G14350.4 31.564 358 202 10 138 489 119 439 1.35e-49 179
MsaG042819 AT4G14350.3 31.564 358 202 10 138 489 119 439 1.68e-49 179
MsaG042819 AT2G19400.1 29.921 381 235 6 126 499 93 448 1.38e-47 173
MsaG042819 AT4G33080.2 28.351 388 237 9 127 503 83 440 2.08e-47 172
MsaG042819 AT5G09890.2 29.947 374 223 8 127 493 91 432 2.46e-47 172
MsaG042819 AT4G33080.1 28.351 388 237 9 127 503 83 440 2.62e-47 172
MsaG042819 AT5G09890.1 29.947 374 223 8 127 493 91 432 2.90e-47 172
MsaG042819 AT2G20470.3 30.790 367 213 8 127 489 113 442 9.47e-47 171
MsaG042819 AT2G20470.2 30.790 367 213 8 127 489 113 442 1.66e-46 171
MsaG042819 AT2G20470.1 30.790 367 213 8 127 489 113 442 1.66e-46 171
MsaG042819 AT1G03920.2 31.006 358 203 8 138 489 24 343 1.89e-46 169
MsaG042819 AT1G03920.1 31.006 358 203 8 138 489 137 456 3.12e-46 170
MsaG042819 AT1G03920.3 31.006 358 203 8 138 489 137 456 3.12e-46 170
MsaG042819 AT5G04510.2 31.534 352 175 9 138 487 44 331 3.26e-46 167
MsaG042819 AT5G04510.1 30.854 363 185 9 127 487 33 331 6.10e-46 168
MsaG042819 AT3G10540.1 30.303 363 187 9 127 487 34 332 2.05e-45 166
MsaG042819 AT5G04510.3 28.660 321 165 6 127 447 33 289 2.48e-37 140
MsaG042819 AT5G58140.4 48.201 139 70 2 105 242 544 681 1.89e-34 138
MsaG042819 AT3G08720.1 35.979 189 105 3 138 312 140 326 1.36e-26 113
MsaG042819 AT3G08720.1 44.068 118 62 3 362 478 291 405 5.75e-24 105
MsaG042819 AT3G08720.3 35.979 189 105 3 138 312 140 326 1.36e-26 113
MsaG042819 AT3G08720.3 44.068 118 62 3 362 478 291 405 5.75e-24 105
MsaG042819 AT3G08720.4 35.979 189 105 3 138 312 140 326 1.36e-26 113
MsaG042819 AT3G08720.4 44.068 118 62 3 362 478 291 405 5.75e-24 105
MsaG042819 AT3G08720.2 35.979 189 105 3 138 312 140 326 1.36e-26 113
MsaG042819 AT3G08720.2 44.068 118 62 3 362 478 291 405 5.75e-24 105
MsaG042819 AT3G08730.1 35.979 189 105 3 138 312 134 320 3.73e-26 111
MsaG042819 AT3G08730.1 44.531 128 65 4 362 486 285 409 1.93e-25 109
MsaG042819 AT3G08730.2 35.979 189 105 3 138 312 134 320 3.73e-26 111
MsaG042819 AT3G08730.2 44.531 128 65 4 362 486 285 409 1.93e-25 109
MsaG042819 AT3G01090.3 26.866 335 165 9 137 470 18 273 7.74e-24 105
MsaG042819 AT3G01090.1 26.866 335 165 9 137 470 18 273 7.74e-24 105
MsaG042819 AT3G01090.2 26.866 335 165 9 137 470 41 296 8.02e-24 105
MsaG042819 AT2G45490.1 23.235 340 182 6 129 468 13 273 1.39e-22 98.6
MsaG042819 AT3G29160.3 23.650 389 214 10 137 524 19 325 2.86e-22 99.0
MsaG042819 AT3G29160.1 23.650 389 214 10 137 524 19 325 9.86e-22 99.0
MsaG042819 AT3G29160.2 23.650 389 214 10 137 524 19 325 9.86e-22 99.0
MsaG042819 AT2G41860.2 24.852 338 170 9 138 469 54 313 1.19e-21 99.0
MsaG042819 AT3G50530.2 26.027 438 254 14 52 476 69 449 1.32e-21 99.0
MsaG042819 AT2G25880.4 24.561 342 174 8 127 468 32 289 1.45e-20 92.8
MsaG042819 AT4G32830.1 24.773 331 170 7 138 468 31 282 1.51e-20 92.4
MsaG042819 AT2G25880.1 24.561 342 174 8 127 468 19 276 1.53e-20 92.4
MsaG042819 AT2G25880.3 24.561 342 174 8 127 468 80 337 6.77e-20 91.7
MsaG042819 AT5G18700.1 34.437 151 91 3 135 285 1 143 8.14e-20 94.4
MsaG042819 AT1G12680.1 33.766 154 92 4 142 294 111 255 9.70e-20 92.4
MsaG042819 AT4G18700.1 33.540 161 100 3 127 285 15 170 1.15e-17 86.3
MsaG042819 AT2G20050.1 38.261 115 67 2 364 476 934 1046 1.68e-17 86.7
MsaG042819 AT2G20050.2 38.261 115 67 2 364 476 931 1043 1.72e-17 86.7
MsaG042819 AT4G24400.1 27.879 165 117 1 136 300 7 169 2.26e-17 85.1
MsaG042819 AT5G57630.2 32.026 153 97 3 135 285 9 156 2.33e-17 84.7
MsaG042819 AT4G24400.2 27.879 165 117 1 136 300 7 169 2.56e-17 84.7
MsaG042819 AT5G57630.1 32.026 153 97 3 135 285 9 156 2.63e-17 84.7
MsaG042819 AT5G45810.1 32.903 155 97 3 133 285 23 172 2.86e-17 85.1
MsaG042819 AT1G29230.1 32.298 161 102 3 127 285 63 218 4.71e-17 84.7
MsaG042819 AT2G45490.2 21.767 317 173 5 129 445 13 254 1.27e-16 80.1
MsaG042819 AT3G04810.2 30.667 150 102 2 137 285 3 151 1.34e-16 83.6
MsaG042819 AT3G04810.1 30.667 150 102 2 137 285 3 151 1.34e-16 83.6
MsaG042819 AT3G04810.3 30.667 150 102 2 137 285 3 151 1.34e-16 83.6
MsaG042819 AT3G17510.1 29.560 159 110 1 127 285 9 165 1.57e-16 82.4
MsaG042819 AT2G30360.1 32.716 162 100 4 128 285 11 167 1.94e-16 82.0
MsaG042819 AT2G25880.2 38.095 105 61 1 364 468 144 244 5.63e-16 78.6
MsaG042819 AT5G45820.1 31.081 148 99 1 138 285 12 156 9.97e-16 80.1
MsaG042819 AT3G20410.2 32.680 153 97 3 138 286 91 241 1.72e-15 79.7
MsaG042819 AT3G20410.1 32.680 153 97 3 138 286 91 241 1.72e-15 79.7
MsaG042819 AT1G50700.3 32.026 153 98 3 138 286 73 223 1.83e-15 79.3
MsaG042819 AT5G28290.1 29.333 150 104 2 137 285 3 151 1.83e-15 79.7
MsaG042819 AT5G28290.2 29.333 150 104 2 137 285 3 151 1.83e-15 79.7
MsaG042819 AT5G25110.1 30.464 151 102 1 135 285 40 187 1.83e-15 79.3
MsaG042819 AT2G38490.1 33.533 167 101 5 122 285 13 172 1.88e-15 79.0
MsaG042819 AT5G28290.3 29.333 150 104 2 137 285 3 151 1.97e-15 79.7
MsaG042819 AT1G35670.1 33.117 154 97 3 137 286 25 176 2.40e-15 79.0
MsaG042819 AT1G50700.1 32.026 153 98 3 138 286 73 223 2.62e-15 79.0
MsaG042819 AT4G04720.2 32.026 153 98 3 138 286 80 230 3.69e-15 78.6
MsaG042819 AT4G04720.1 32.026 153 98 3 138 286 80 230 3.69e-15 78.6
MsaG042819 AT5G10930.1 31.579 152 100 2 135 285 9 157 3.71e-15 78.2
MsaG042819 AT1G30270.1 31.579 152 98 4 136 285 29 176 3.79e-15 78.6
MsaG042819 AT1G50700.2 32.026 153 98 3 138 286 73 223 3.86e-15 78.6
MsaG042819 AT3G10660.2 34.810 158 96 6 134 286 181 336 3.95e-15 79.0
MsaG042819 AT3G10660.1 34.810 158 96 6 134 286 181 336 3.95e-15 79.0
MsaG042819 AT1G54510.4 29.333 150 104 2 137 285 3 151 4.60e-15 78.6
MsaG042819 AT1G54510.2 29.333 150 104 2 137 285 3 151 4.60e-15 78.6
MsaG042819 AT1G54510.1 29.333 150 104 2 137 285 3 151 4.60e-15 78.6
MsaG042819 AT1G54510.3 29.333 150 104 2 137 285 3 151 4.60e-15 78.6
MsaG042819 AT1G30270.2 31.579 152 98 4 136 285 29 176 5.87e-15 77.8
MsaG042819 AT3G44200.2 28.571 154 104 3 135 285 5 155 7.51e-15 78.2
MsaG042819 AT3G44200.1 28.571 154 104 3 135 285 5 155 7.51e-15 78.2
MsaG042819 AT3G61960.2 25.915 328 161 13 136 456 8 260 1.06e-14 77.4
MsaG042819 AT3G61960.1 26.524 328 159 14 136 456 8 260 1.22e-14 77.4
MsaG042819 AT5G21326.1 30.323 155 96 2 136 285 11 158 1.39e-14 76.3
MsaG042819 AT2G34180.1 29.012 162 108 3 127 286 46 202 2.90e-14 75.9
MsaG042819 AT2G26980.1 26.087 161 117 1 125 285 1 159 3.27e-14 74.7
MsaG042819 AT1G50240.3 35.922 103 60 2 367 469 161 257 3.96e-14 76.3
MsaG042819 AT1G50240.3 28.750 160 110 3 138 297 6 161 1.47e-12 71.2
MsaG042819 AT1G50240.2 35.922 103 60 2 367 469 161 257 3.96e-14 76.3
MsaG042819 AT1G50240.2 28.750 160 110 3 138 297 6 161 1.47e-12 71.2
MsaG042819 AT5G39440.1 31.081 148 100 1 138 285 19 164 4.00e-14 75.1
MsaG042819 AT5G39440.1 32.886 149 88 6 370 515 178 317 5.41e-13 71.6
MsaG042819 AT5G35410.2 28.667 150 105 2 136 285 9 156 4.28e-14 74.3
MsaG042819 AT2G26980.3 26.087 161 117 1 125 285 1 159 4.32e-14 75.1
MsaG042819 AT2G26980.4 26.087 161 117 1 125 285 11 169 4.34e-14 75.1
MsaG042819 AT4G19110.2 27.679 336 186 14 137 469 3 284 5.88e-14 74.7
MsaG042819 AT4G19110.1 27.679 336 186 14 137 469 3 284 6.42e-14 74.3
MsaG042819 AT4G24100.1 30.519 154 105 1 132 285 27 178 6.98e-14 75.1
MsaG042819 AT4G24100.2 30.519 154 105 1 132 285 27 178 7.41e-14 74.7
MsaG042819 AT2G25090.1 29.878 164 110 3 124 285 1 161 7.46e-14 74.3
MsaG042819 AT4G24100.4 30.519 154 105 1 132 285 43 194 8.14e-14 74.7
MsaG042819 AT3G63280.2 28.188 149 105 2 138 285 4 151 8.33e-14 74.3
MsaG042819 AT3G63280.3 28.188 149 105 2 138 285 4 151 8.33e-14 74.3
MsaG042819 AT3G63280.1 28.188 149 105 2 138 285 4 151 8.33e-14 74.3
MsaG042819 AT4G24100.3 30.519 154 105 1 132 285 43 194 9.95e-14 74.3
MsaG042819 AT5G35410.1 28.667 150 105 2 136 285 9 156 1.04e-13 73.9
MsaG042819 AT2G26980.5 26.087 161 117 1 125 285 1 159 1.08e-13 73.6
MsaG042819 AT2G41860.1 31.373 153 99 3 138 286 54 204 1.18e-13 73.9
MsaG042819 AT2G26980.2 27.333 150 107 1 136 285 12 159 1.28e-13 71.6
MsaG042819 AT5G12480.1 31.818 154 99 3 137 286 58 209 1.31e-13 73.9
MsaG042819 AT2G35890.2 30.380 158 106 3 137 292 131 286 1.46e-13 73.6
MsaG042819 AT2G35890.1 30.380 158 106 3 137 292 131 286 1.46e-13 73.6
MsaG042819 AT5G01810.1 30.405 148 100 1 138 285 12 156 1.54e-13 73.2
MsaG042819 AT5G01810.2 30.405 148 100 1 138 285 12 156 1.54e-13 73.2
MsaG042819 AT5G01810.3 30.405 148 100 1 138 285 12 156 1.61e-13 72.8
MsaG042819 AT4G09570.1 31.818 154 99 3 137 286 24 175 1.62e-13 73.6
MsaG042819 AT2G17890.1 29.299 157 106 3 134 285 103 259 1.66e-13 73.6
MsaG042819 AT4G14480.1 31.613 155 101 3 133 285 10 161 1.69e-13 73.2
MsaG042819 AT1G69220.1 27.632 152 107 2 138 289 249 397 1.82e-13 73.9
MsaG042819 AT3G63280.4 28.188 149 105 2 138 285 58 205 1.85e-13 73.6
MsaG042819 AT4G30960.1 28.481 158 110 1 128 285 14 168 2.43e-13 72.4
MsaG042819 AT4G35310.2 32.026 153 98 4 138 286 97 247 2.73e-13 72.8
MsaG042819 AT4G35310.1 32.026 153 98 4 138 286 97 247 2.73e-13 72.8
MsaG042819 AT1G01140.2 26.282 156 113 1 130 285 11 164 3.18e-13 72.4
MsaG042819 AT5G19360.1 30.065 153 101 3 138 286 68 218 3.18e-13 72.4
MsaG042819 AT4G26070.5 29.936 157 103 5 131 285 48 199 3.28e-13 71.2
MsaG042819 AT1G01140.1 26.282 156 113 1 130 285 11 164 3.38e-13 72.0
MsaG042819 AT3G50530.1 29.630 243 152 8 52 285 69 301 3.47e-13 72.8
MsaG042819 AT5G12180.1 30.065 153 101 3 138 286 73 223 3.48e-13 72.4
MsaG042819 AT1G53570.7 30.675 163 109 2 135 295 211 371 3.49e-13 72.4
MsaG042819 AT4G26070.4 30.128 156 102 5 132 285 61 211 3.52e-13 71.6
MsaG042819 AT1G01140.3 26.282 156 113 1 130 285 11 164 3.53e-13 72.0
MsaG042819 AT4G26070.1 30.128 156 102 5 132 285 62 212 3.61e-13 70.9
MsaG042819 AT1G53570.6 30.675 163 109 2 135 295 211 371 3.80e-13 72.4
MsaG042819 AT4G36070.1 27.439 164 108 3 133 285 59 222 4.20e-13 72.0
MsaG042819 AT4G26070.2 30.128 156 102 5 132 285 62 212 4.37e-13 71.2
MsaG042819 AT4G26070.3 30.128 156 102 5 132 285 62 212 4.37e-13 71.2
MsaG042819 AT4G10730.2 31.613 155 102 3 132 285 21 172 4.47e-13 72.4
MsaG042819 AT5G45430.2 31.847 157 100 5 137 292 3 153 4.57e-13 72.0
MsaG042819 AT5G45430.1 31.847 157 100 5 137 292 3 153 4.59e-13 72.0
MsaG042819 AT5G01820.1 33.333 153 95 3 135 285 19 166 4.96e-13 71.6
MsaG042819 AT1G53570.2 30.675 163 109 2 135 295 211 371 5.06e-13 72.0
MsaG042819 AT1G53570.3 30.675 163 109 2 135 295 211 371 5.06e-13 72.0
MsaG042819 AT4G10730.1 31.613 155 102 3 132 285 41 192 5.24e-13 72.4
MsaG042819 AT1G53570.1 30.675 163 109 2 135 295 211 371 5.29e-13 72.0
MsaG042819 AT1G53570.4 30.675 163 109 2 135 295 211 371 5.47e-13 72.0
MsaG042819 AT2G17290.1 31.373 153 99 3 138 286 85 235 5.58e-13 72.0
MsaG042819 AT2G17290.2 31.373 153 99 3 138 286 85 235 5.58e-13 72.0
MsaG042819 AT4G36070.2 27.439 164 108 3 133 285 59 222 5.70e-13 72.0
MsaG042819 AT4G14580.1 29.870 154 101 3 135 285 18 167 5.98e-13 71.2
MsaG042819 AT4G21940.2 33.846 130 71 5 343 470 246 362 8.03e-13 71.2
MsaG042819 AT4G21940.2 28.758 153 103 3 138 286 102 252 6.28e-12 68.6
MsaG042819 AT1G09000.2 30.233 172 111 4 138 303 69 237 8.31e-13 71.6
MsaG042819 AT4G21940.3 33.846 130 71 5 343 470 246 362 8.44e-13 71.2
MsaG042819 AT4G21940.3 28.758 153 103 3 138 286 102 252 5.41e-12 68.6
MsaG042819 AT1G32320.1 30.986 142 90 2 144 285 54 187 8.47e-13 69.7
MsaG042819 AT5G19450.2 32.026 153 98 3 138 286 57 207 8.55e-13 71.2
MsaG042819 AT5G19450.1 32.026 153 98 3 138 286 57 207 8.55e-13 71.2
MsaG042819 AT4G21940.1 33.846 130 71 5 343 470 246 362 8.81e-13 71.2
MsaG042819 AT4G21940.1 28.758 153 103 3 138 286 102 252 6.66e-12 68.6
MsaG042819 AT1G09000.1 30.233 172 111 4 138 303 69 237 8.99e-13 71.2
MsaG042819 AT3G57530.1 31.373 153 99 3 138 286 63 213 1.68e-12 70.5
MsaG042819 AT3G57530.2 31.373 153 99 3 138 286 63 213 1.82e-12 69.7
MsaG042819 AT1G54960.1 30.065 153 100 2 138 285 68 218 2.19e-12 70.1
MsaG042819 AT1G54960.2 30.065 153 100 2 138 285 68 218 2.19e-12 70.1
MsaG042819 AT1G12580.1 30.519 154 99 4 137 285 43 193 2.40e-12 69.7
MsaG042819 AT4G40010.1 22.388 335 178 11 138 468 4 260 2.55e-12 68.9
MsaG042819 AT1G69220.2 28.671 143 99 2 147 289 231 370 2.72e-12 70.1
MsaG042819 AT5G04870.1 32.278 158 100 5 134 286 145 300 3.43e-12 69.3
MsaG042819 AT1G53165.3 25.000 160 113 3 130 289 10 162 3.61e-12 69.7
MsaG042819 AT1G53165.1 25.000 160 113 3 130 289 10 162 3.61e-12 69.3
MsaG042819 AT1G53165.2 25.000 160 113 3 130 289 10 162 3.99e-12 69.3
MsaG042819 AT4G38230.2 32.026 153 98 4 138 286 54 204 4.60e-12 68.9
MsaG042819 AT5G66210.3 27.451 153 107 2 137 285 61 213 4.61e-12 68.9
MsaG042819 AT5G66210.1 27.451 153 107 2 137 285 61 213 5.15e-12 68.6
MsaG042819 AT5G66210.2 27.451 153 107 2 137 285 61 213 5.15e-12 68.6
MsaG042819 AT5G66210.5 27.451 153 107 2 137 285 61 213 5.68e-12 68.6
MsaG042819 AT5G66210.6 27.451 153 107 2 137 285 61 213 5.69e-12 68.2
MsaG042819 AT5G66210.4 27.451 153 107 2 137 285 61 213 5.69e-12 68.2
MsaG042819 AT1G08650.2 30.061 163 107 5 124 282 1 160 5.90e-12 67.0
MsaG042819 AT1G08650.2 35.870 92 57 1 369 458 176 267 2.38e-11 65.1
MsaG042819 AT1G08650.1 34.951 103 61 2 369 469 176 274 5.98e-12 67.0
MsaG042819 AT1G08650.1 30.061 163 107 5 124 282 1 160 6.32e-12 67.0
MsaG042819 AT1G48260.1 28.395 162 110 3 124 285 1 156 6.49e-12 68.2
MsaG042819 AT4G38230.4 32.026 153 98 4 138 286 24 174 6.67e-12 68.2
MsaG042819 AT4G38230.3 32.026 153 98 4 138 286 24 174 6.67e-12 68.2
MsaG042819 AT5G58380.1 28.169 142 99 1 144 285 18 156 9.05e-12 67.8
MsaG042819 AT5G23580.1 31.210 157 102 3 137 289 21 175 1.12e-11 67.4
MsaG042819 AT3G23000.1 25.926 162 105 3 131 285 18 171 1.33e-11 67.0
MsaG042819 AT2G38910.1 26.761 213 144 7 82 292 86 288 1.34e-11 67.4
MsaG042819 AT3G15220.1 25.325 154 111 2 136 289 13 162 1.53e-11 67.4
MsaG042819 AT1G63700.1 32.414 145 92 4 144 285 406 547 1.78e-11 67.4
MsaG042819 AT1G63700.2 32.414 145 92 4 144 285 406 547 1.78e-11 67.4
MsaG042819 AT1G18350.1 33.793 145 85 4 144 285 51 187 1.91e-11 65.9
MsaG042819 AT3G06030.1 31.169 154 99 3 137 285 67 218 2.47e-11 66.6
MsaG042819 AT3G04530.1 29.054 148 103 2 137 282 10 157 2.87e-11 64.7
MsaG042819 AT1G73500.1 32.911 158 87 6 144 297 53 195 3.77e-11 64.7
MsaG042819 AT4G04740.2 32.117 137 87 3 153 285 84 218 4.37e-11 65.9
MsaG042819 AT4G04740.4 32.117 137 87 3 153 285 84 218 4.71e-11 65.9
MsaG042819 AT4G04740.6 32.117 137 87 3 153 285 84 218 4.71e-11 65.9
MsaG042819 AT4G04740.5 32.117 137 87 3 153 285 84 218 4.71e-11 65.9
MsaG042819 AT4G04740.3 32.117 137 87 3 153 285 84 218 4.71e-11 65.9
MsaG042819 AT4G04740.1 32.117 137 87 3 153 285 84 218 4.71e-11 65.9
MsaG042819 AT4G04740.7 32.117 137 87 3 153 285 84 218 4.71e-11 65.9
MsaG042819 AT5G21222.1 28.082 146 100 3 139 284 17 157 5.58e-11 65.9
MsaG042819 AT5G21222.2 28.082 146 100 3 139 284 17 157 5.58e-11 65.9
MsaG042819 AT5G21222.4 28.082 146 100 3 139 284 17 157 5.58e-11 65.9
MsaG042819 AT5G21222.3 28.082 146 100 3 139 284 17 157 5.58e-11 65.9
MsaG042819 AT4G29810.3 27.451 204 120 7 99 285 31 223 5.87e-11 64.7
MsaG042819 AT1G70430.1 29.054 148 103 1 138 285 16 161 6.09e-11 65.5
MsaG042819 AT3G20860.1 26.351 148 108 1 138 285 4 150 6.14e-11 65.1
MsaG042819 AT1G70430.4 29.054 148 103 1 138 285 16 161 6.18e-11 65.5
MsaG042819 AT1G70430.3 29.054 148 103 1 138 285 16 161 6.42e-11 65.5
MsaG042819 AT4G04710.2 28.723 188 122 5 110 290 8 190 6.46e-11 65.1
MsaG042819 AT4G26890.1 32.168 143 85 4 144 282 11 145 6.77e-11 65.1
MsaG042819 AT4G29810.2 27.451 204 120 7 99 285 31 223 7.18e-11 64.3
MsaG042819 AT3G51850.3 26.519 181 113 7 298 474 154 318 8.08e-11 64.7
MsaG042819 AT4G04710.4 28.723 188 122 5 110 290 8 190 8.37e-11 64.7
MsaG042819 AT4G04710.1 28.723 188 122 5 110 290 8 190 8.86e-11 64.7
MsaG042819 AT3G51850.2 26.519 181 113 7 298 474 154 318 9.32e-11 64.7

Find 109 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCACCACGCACAATTTC+TGG 0.112048 8:+28050957 None:intergenic
ATGTTGTAGGACAACCTTTA+AGG 0.211479 8:-28050830 MsaT042819.1:CDS
TACGGAACAACACCGTTTAA+AGG 0.213886 8:-28050879 MsaT042819.1:CDS
GTGTATCTTGTTGAACTTAA+AGG 0.215757 8:-28051850 MsaT042819.1:CDS
ATTCTATGCTATGAAATTAA+TGG 0.223149 8:-28051818 MsaT042819.1:CDS
GTTGGTTCTGCCATTAATTC+TGG 0.251158 8:+28051026 None:intergenic
CCACTCCTTGAAATCATTCT+TGG 0.275035 8:+28052048 None:intergenic
GCTGTTGATTGGTGGACATT+TGG 0.327566 8:-28050924 MsaT042819.1:CDS
ATCATTCTTGGACTTGGTCT+TGG 0.329072 8:+28052060 None:intergenic
CTTGAAATCATTCTTGGACT+TGG 0.351669 8:+28052054 None:intergenic
CTTGGGAAGAAGAAACTTGA+TGG 0.353024 8:+28051116 None:intergenic
GGATGGTCAGGAAACCTTAA+AGG 0.360456 8:+28050816 None:intergenic
TGTATCTTGTTGAACTTAAA+GGG 0.365167 8:-28051849 MsaT042819.1:CDS
CTGTTGATTGGTGGACATTT+GGG 0.384043 8:-28050923 MsaT042819.1:CDS
AGACTACCGCTACGTGAATT+CGG 0.385355 8:+28052024 None:intergenic
CTAACATCATTATGTAAATC+AGG 0.385994 8:+28052427 None:intergenic
CGAAAATCAAAATCAGATTT+CGG 0.387635 8:-28051071 MsaT042819.1:CDS
TGGCCGTCTTCCAGAATTAA+TGG 0.388498 8:-28051036 MsaT042819.1:CDS
GAAGTATTATTGTTTGGTAA+TGG 0.391024 8:-28051680 MsaT042819.1:CDS
TGCTATGAAATTAATGGATA+AGG 0.395657 8:-28051812 MsaT042819.1:CDS
ATGGAATACCTCCACATGTT+AGG 0.404335 8:-28051335 MsaT042819.1:CDS
AAATGAGAAGTATTATTGTT+TGG 0.406187 8:-28051686 MsaT042819.1:CDS
TTATAAGCAATTCTCTTATG+AGG 0.406276 8:+28050741 None:intergenic
CATACTGAGAGGGAGATTCT+TGG 0.411419 8:-28051754 MsaT042819.1:CDS
GGAGGAGGATTTGACGAGGG+TGG 0.414561 8:+28051211 None:intergenic
TCAAAATAAGAATACAAAGT+TGG 0.417105 8:+28051709 None:intergenic
GTAGCTAGGGATCTTATTAG+AGG 0.417741 8:-28050780 MsaT042819.1:CDS
TCAAGTTCAAATCTTAACTT+TGG 0.419954 8:-28051919 MsaT042819.1:CDS
GCTGGTTATGTGGGCGGAGG+AGG 0.425987 8:+28051196 None:intergenic
GAGGAGGATTTGACGAGGGT+GGG 0.431184 8:+28051212 None:intergenic
TCAAACGGTTCAGGTATAAT+CGG 0.432118 8:+28050642 None:intergenic
GACATTGATCGGACGTTAGT+TGG 0.433025 8:+28051008 None:intergenic
TCCAATGGATGTGGTGGTGC+TGG 0.433860 8:+28051178 None:intergenic
GAATACAAAGTTGGCAAGAA+AGG 0.434058 8:+28051718 None:intergenic
CGGTTTCCATTACCTTTAAA+CGG 0.434303 8:+28050867 None:intergenic
TGACTAAAATCAAACGGTTC+AGG 0.435572 8:+28050633 None:intergenic
CACCACATCCATTGGAATCC+TGG 0.436045 8:-28051171 MsaT042819.1:CDS
AACAATCAAGAAGCAATAGA+TGG 0.436045 8:-28052192 MsaT042819.1:CDS
TGGACTTGGTCTTGGAGTTG+TGG 0.437521 8:+28052068 None:intergenic
GTACTGCATGTTCGTCGTCC+AGG 0.438247 8:+28051153 None:intergenic
CTTCTGCGAGTCCGGTAGCT+AGG 0.444960 8:-28050794 MsaT042819.1:CDS
ATGTGGTGGTGCTGGTTATG+TGG 0.449312 8:+28051186 None:intergenic
CAAGTCCAAGAATGATTTCA+AGG 0.454121 8:-28052053 MsaT042819.1:CDS
ACAACACCGTTTAAAGGTAA+TGG 0.454704 8:-28050873 MsaT042819.1:CDS
AAGAGAATTGCTTATAAAAG+AGG 0.460267 8:-28050735 MsaT042819.1:CDS
TGTGGTGGTGCTGGTTATGT+GGG 0.472452 8:+28051187 None:intergenic
CTTGTTGAACTTAAAGGGAC+TGG 0.475118 8:-28051844 MsaT042819.1:CDS
TGACCATCCTTCTGCGAGTC+CGG 0.475308 8:-28050802 MsaT042819.1:CDS
TCCGATCAATGTCATTCGTT+GGG 0.477625 8:-28050998 MsaT042819.1:CDS
TTCAGAGATTCTATTAGCAA+TGG 0.477706 8:-28051354 MsaT042819.1:CDS
CTCACATCACCTCCTGTATG+AGG 0.480099 8:+28051973 None:intergenic
TGTGGCCTTGGTGATGATGT+TGG 0.482333 8:+28052129 None:intergenic
CCTGTATGAGGCTTAAATAT+CGG 0.488369 8:+28051985 None:intergenic
TGTGGCCATTGTCTCGGACT+AGG 0.488886 8:+28051279 None:intergenic
ACCAGCACCACCACATCCAT+TGG 0.494567 8:-28051179 MsaT042819.1:CDS
CGTGTTGGTTACGGTGACAT+TGG 0.496051 8:-28051877 MsaT042819.1:CDS
GTCCGATCAATGTCATTCGT+TGG 0.506631 8:-28050999 MsaT042819.1:CDS
AGGAGGATTTGACGAGGGTG+GGG 0.506798 8:+28051213 None:intergenic
CCGATATTTAAGCCTCATAC+AGG 0.510168 8:-28051985 MsaT042819.1:CDS
TTTCGGCTTGTGAAGCGTGT+TGG 0.519435 8:-28051892 MsaT042819.1:CDS
GGACTCGCAGAAGGATGGTC+AGG 0.521180 8:+28050804 None:intergenic
TTCTGCGAGTCCGGTAGCTA+GGG 0.524770 8:-28050793 MsaT042819.1:CDS
ACATACTGACTAAAATCAAA+CGG 0.525447 8:+28050627 None:intergenic
CTTGTGAAGCGTGTTGGTTA+CGG 0.527758 8:-28051886 MsaT042819.1:CDS
AAAATCAGATTTCGGTCTCA+TGG 0.532025 8:-28051063 MsaT042819.1:CDS
TCCCAACGAATGACATTGAT+CGG 0.538128 8:+28050997 None:intergenic
GCATTATGTGGCCATTGTCT+CGG 0.542930 8:+28051273 None:intergenic
GACACGGTAGTGCTGTTGAT+TGG 0.543609 8:-28050935 MsaT042819.1:CDS
CCAGAAATTGTGCGTGGTGA+AGG 0.544337 8:-28050957 MsaT042819.1:CDS
GTCCAGGATTCCAATGGATG+TGG 0.555162 8:+28051169 None:intergenic
CTAATAAGATCCCTAGCTAC+CGG 0.565436 8:+28050783 None:intergenic
GGTGCTGGTTATGTGGGCGG+AGG 0.573984 8:+28051193 None:intergenic
ATACAGGAGGTGATGTGAGG+TGG 0.579971 8:-28051969 MsaT042819.1:CDS
CGAAATCTGATAGCATTATG+TGG 0.587125 8:+28051261 None:intergenic
CTAGCTACCGGACTCGCAGA+AGG 0.587354 8:+28050795 None:intergenic
CTACCGGACTCGCAGAAGGA+TGG 0.592253 8:+28050799 None:intergenic
GACGACGAACATGCAGTACA+AGG 0.593811 8:-28051149 MsaT042819.1:CDS
CTGCCATTAATTCTGGAAGA+CGG 0.601457 8:+28051033 None:intergenic
TAGCTAGGGATCTTATTAGA+GGG 0.602530 8:-28050779 MsaT042819.1:CDS
TTCGTCGTCCAGGATTCCAA+TGG 0.604326 8:+28051163 None:intergenic
TCAGATTTCGGTCTCATGGT+AGG 0.604590 8:-28051059 MsaT042819.1:CDS
TGTATACTATTCCTAACATG+TGG 0.609058 8:+28051324 None:intergenic
AACGTCCTAGTCCGAGACAA+TGG 0.610314 8:-28051284 MsaT042819.1:CDS
ACGGTAGTGCTGTTGATTGG+TGG 0.616072 8:-28050932 MsaT042819.1:CDS
GCAATCAACATGGTTTCAAG+AGG 0.616553 8:-28051943 MsaT042819.1:CDS
TACAGGAGGTGATGTGAGGT+GGG 0.623475 8:-28051968 MsaT042819.1:CDS
CCAAGAATGATTTCAAGGAG+TGG 0.625449 8:-28052048 MsaT042819.1:CDS
TCTTAGAGCACATACTGAGA+GGG 0.629680 8:-28051764 MsaT042819.1:CDS
TGGGGCTGACAGAACAACGG+AGG 0.630984 8:+28051231 None:intergenic
TTCTTAGAGCACATACTGAG+AGG 0.632593 8:-28051765 MsaT042819.1:CDS
AACGGTTCAGGTATAATCGG+AGG 0.648560 8:+28050645 None:intergenic
CAGGATTCCAATGGATGTGG+TGG 0.649931 8:+28051172 None:intergenic
GGTGGTGCTGGTTATGTGGG+CGG 0.650221 8:+28051190 None:intergenic
CTCATACAGGAGGTGATGTG+AGG 0.651396 8:-28051972 MsaT042819.1:CDS
GATTTCGGTCTCATGGTAGG+TGG 0.652081 8:-28051056 MsaT042819.1:CDS
GGGTGGGGCTGACAGAACAA+CGG 0.659786 8:+28051228 None:intergenic
ATACTATTCCTAACATGTGG+AGG 0.662634 8:+28051327 None:intergenic
TGTTAGTAAGGATACTGTTG+TGG 0.662871 8:-28050607 MsaT042819.1:CDS
GGCGGAGGAGGATTTGACGA+GGG 0.667119 8:+28051208 None:intergenic
CAATCAACATGGTTTCAAGA+GGG 0.669312 8:-28051942 MsaT042819.1:CDS
ATTTCACTGAAAATGCTGCA+AGG 0.671987 8:-28051603 MsaT042819.1:intron
GGGGCTGACAGAACAACGGA+GGG 0.685170 8:+28051232 None:intergenic
ATATTTAAGCCTCATACAGG+AGG 0.692749 8:-28051982 MsaT042819.1:CDS
ATTGTGCGTGGTGAAGGACA+CGG 0.703062 8:-28050951 MsaT042819.1:CDS
GGGCGGAGGAGGATTTGACG+AGG 0.718490 8:+28051207 None:intergenic
CTTGCTCCAGAAATTGTGCG+TGG 0.726085 8:-28050963 MsaT042819.1:CDS
GAGGTGGGATGCAATCAACA+TGG 0.762746 8:-28051953 MsaT042819.1:CDS
ATAAACCAACATCATCACCA+AGG 0.762848 8:-28052134 MsaT042819.1:CDS
AGTGGACCGAATTCACGTAG+CGG 0.777929 8:-28052030 MsaT042819.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 28050512 28052452 28050512 ID=MsaG042819
Chr8 mRNA 28050512 28052452 28050512 ID=MsaT042819.1;Parent=MsaG042819
Chr8 exon 28050512 28051385 28050512 ID=MsaT042819.1.exon3;Parent=MsaT042819.1
Chr8 CDS 28050512 28051385 28050512 ID=cds.MsaT042819.1;Parent=MsaT042819.1
Chr8 exon 28051604 28052304 28051604 ID=MsaT042819.1.exon2;Parent=MsaT042819.1
Chr8 CDS 28051604 28052304 28051604 ID=cds.MsaT042819.1;Parent=MsaT042819.1
Chr8 exon 28052432 28052452 28052432 ID=MsaT042819.1.exon1;Parent=MsaT042819.1
Chr8 CDS 28052432 28052452 28052432 ID=cds.MsaT042819.1;Parent=MsaT042819.1
Gene Sequence

>MsaT042819.1

ATGCCTGATTTACATAATGATATGAGTGACAACAGCTTATCTGAAGAAGCTCAGAAAACAGATCAAAGTTGTGCAAATGATCATACAGAAAATGATGATACTAAACAAGAGAACAATCAAGAAGCAATAGATGGTTTCACAAATCAAAACAATGCAAAGAAAACTATGAATAAACCAACATCATCACCAAGGCCACAAAAGTTAGAATCACTTATGAGAAATTTCTCTGAATTTTCCACAACTCCAAGACCAAGTCCAAGAATGATTTCAAGGAGTGGACCGAATTCACGTAGCGGTAGTCTAGAAAGCACAAGTGCACCGATATTTAAGCCTCATACAGGAGGTGATGTGAGGTGGGATGCAATCAACATGGTTTCAAGAGGGTCAAGTTCAAATCTTAACTTTGGTCATTTTCGGCTTGTGAAGCGTGTTGGTTACGGTGACATTGGAAGTGTGTATCTTGTTGAACTTAAAGGGACTGGAACATTCTATGCTATGAAATTAATGGATAAGGCTTCACTTGCTAGCAGAAATAAGCTTCTTAGAGCACATACTGAGAGGGAGATTCTTGGACTTCTTGATCATCCTTTCTTGCCAACTTTGTATTCTTATTTTGAAAATGAGAAGTATTATTGTTTGGTAATGGAGTTTTGTAGTTGTGGTAGTTTGCATAATCTCAGAATGAAGCAACCCAACAAGCATTTCACTGAAAATGCTGCAAGGTTTTATTGTTCAGAGATTCTATTAGCAATGGAATACCTCCACATGTTAGGAATAGTATACAGAGACTTAAAACCAGAAAACGTCCTAGTCCGAGACAATGGCCACATAATGCTATCAGATTTCGACTTATCCCTCCGTTGTTCTGTCAGCCCCACCCTCGTCAAATCCTCCTCCGCCCACATAACCAGCACCACCACATCCATTGGAATCCTGGACGACGAACATGCAGTACAAGGTTGCATGCAACCATCAAGTTTCTTCTTCCCAAGAATCCTCCCATCCAAAAGAAACCGAAAATCAAAATCAGATTTCGGTCTCATGGTAGGTGGCCGTCTTCCAGAATTAATGGCAGAACCAACTAACGTCCGATCAATGTCATTCGTTGGGACACATGAGTATCTTGCTCCAGAAATTGTGCGTGGTGAAGGACACGGTAGTGCTGTTGATTGGTGGACATTTGGGATATTTTTATACGAGCTTTTATACGGAACAACACCGTTTAAAGGTAATGGAAACCGCGCTACGCTTTTTAATGTTGTAGGACAACCTTTAAGGTTTCCTGACCATCCTTCTGCGAGTCCGGTAGCTAGGGATCTTATTAGAGGGTTGCTTGTTAAAGAGCCTCATAAGAGAATTGCTTATAAAAGAGGTGCTACTGAGATTAAACAACATCCATTTTTCGAAGGTGTTAATTGGGCTTTGATTCGAAGTTCTACTCCTCCGATTATACCTGAACCGTTTGATTTTAGTCAGTATGTTAGTAAGGATACTGTTGTGGCTGCTGCTGATAATAAGAAGATTGTTGATATTGTTAGTGATAAAAATAGTAAGATGCAGCATGATTCTTCTTATGAAGATTTTGAGTATTTTTAG
Protein sequence

>MsaT042819.1

MPDLHNDMSDNSLSEEAQKTDQSCANDHTENDDTKQENNQEAIDGFTNQNNAKKTMNKPTSSPRPQKLESLMRNFSEFSTTPRPSPRMISRSGPNSRSGSLESTSAPIFKPHTGGDVRWDAINMVSRGSSSNLNFGHFRLVKRVGYGDIGSVYLVELKGTGTFYAMKLMDKASLASRNKLLRAHTEREILGLLDHPFLPTLYSYFENEKYYCLVMEFCSCGSLHNLRMKQPNKHFTENAARFYCSEILLAMEYLHMLGIVYRDLKPENVLVRDNGHIMLSDFDLSLRCSVSPTLVKSSSAHITSTTTSIGILDDEHAVQGCMQPSSFFFPRILPSKRNRKSKSDFGLMVGGRLPELMAEPTNVRSMSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLYGTTPFKGNGNRATLFNVVGQPLRFPDHPSASPVARDLIRGLLVKEPHKRIAYKRGATEIKQHPFFEGVNWALIRSSTPPIIPEPFDFSQYVSKDTVVAAADNKKIVDIVSDKNSKMQHDSSYEDFEYF*