Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042851 | QSD99531.1 | 96.552 | 348 | 9 | 3 | 1 | 346 | 1 | 347 | 0.0 | 690 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042851 | sp|E5L8F7|IPN2_LOTJA | 68.901 | 373 | 74 | 16 | 1 | 346 | 1 | 358 | 1.36e-158 | 451 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042851 | tr|A0A896W389|A0A896W389_MELAB | 96.552 | 348 | 9 | 3 | 1 | 346 | 1 | 347 | 0.0 | 690 |
Gene ID | Type | Classification |
---|---|---|
MsaG042851 | TF | GARP-G2-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042851 | MtrunA17_Chr8g0356501 | 94.842 | 349 | 11 | 5 | 1 | 346 | 1 | 345 | 0.0 | 654 |
MsaG042851 | MtrunA17_Chr2g0310011 | 60.519 | 385 | 76 | 17 | 1 | 346 | 1 | 348 | 3.22e-128 | 370 |
MsaG042851 | MtrunA17_Chr5g0409731 | 42.400 | 250 | 110 | 10 | 13 | 236 | 1 | 242 | 2.71e-52 | 174 |
MsaG042851 | MtrunA17_Chr2g0321461 | 48.469 | 196 | 76 | 3 | 26 | 204 | 35 | 222 | 4.14e-52 | 177 |
MsaG042851 | MtrunA17_Chr4g0042451 | 48.387 | 186 | 82 | 2 | 29 | 206 | 10 | 189 | 3.34e-51 | 173 |
MsaG042851 | MtrunA17_Chr6g0461641 | 46.190 | 210 | 92 | 6 | 29 | 222 | 35 | 239 | 6.03e-51 | 174 |
MsaG042851 | MtrunA17_Chr5g0417521 | 55.414 | 157 | 61 | 2 | 29 | 176 | 8 | 164 | 3.36e-49 | 168 |
MsaG042851 | MtrunA17_Chr2g0290991 | 52.514 | 179 | 68 | 5 | 24 | 187 | 27 | 203 | 2.86e-47 | 162 |
MsaG042851 | MtrunA17_Chr1g0197171 | 52.381 | 168 | 67 | 4 | 15 | 173 | 23 | 186 | 1.05e-45 | 157 |
MsaG042851 | MtrunA17_Chr7g0254981 | 54.605 | 152 | 53 | 5 | 36 | 180 | 50 | 192 | 2.78e-44 | 153 |
MsaG042851 | MtrunA17_Chr2g0291021 | 50.000 | 172 | 75 | 4 | 36 | 206 | 49 | 210 | 4.26e-44 | 154 |
MsaG042851 | MtrunA17_Chr7g0261911 | 39.234 | 209 | 105 | 6 | 36 | 237 | 262 | 455 | 2.90e-38 | 142 |
MsaG042851 | MtrunA17_Chr1g0190301 | 40.237 | 169 | 85 | 4 | 2 | 167 | 148 | 303 | 3.79e-34 | 129 |
MsaG042851 | MtrunA17_Chr7g0274471 | 41.722 | 151 | 77 | 3 | 36 | 183 | 218 | 360 | 6.57e-34 | 129 |
MsaG042851 | MtrunA17_Chr1g0175091 | 42.657 | 143 | 71 | 3 | 32 | 171 | 254 | 388 | 4.34e-30 | 119 |
MsaG042851 | MtrunA17_Chr7g0258551 | 40.714 | 140 | 75 | 3 | 36 | 173 | 212 | 345 | 3.90e-29 | 115 |
MsaG042851 | MtrunA17_Chr7g0242521 | 43.182 | 132 | 68 | 2 | 36 | 164 | 13 | 140 | 7.14e-26 | 103 |
MsaG042851 | MtrunA17_Chr1g0175071 | 39.103 | 156 | 83 | 2 | 26 | 177 | 167 | 314 | 2.58e-25 | 103 |
MsaG042851 | MtrunA17_Chr3g0095611 | 36.364 | 132 | 62 | 3 | 36 | 158 | 19 | 137 | 2.42e-16 | 77.0 |
MsaG042851 | MtrunA17_Chr7g0243081 | 55.357 | 56 | 25 | 0 | 37 | 92 | 72 | 127 | 1.31e-15 | 77.0 |
MsaG042851 | MtrunA17_Chr3g0109981 | 51.429 | 70 | 34 | 0 | 37 | 106 | 275 | 344 | 1.61e-15 | 77.4 |
MsaG042851 | MtrunA17_Chr6g0479431 | 56.667 | 60 | 26 | 0 | 37 | 96 | 203 | 262 | 1.67e-15 | 76.6 |
MsaG042851 | MtrunA17_Chr1g0210911 | 56.452 | 62 | 22 | 1 | 37 | 93 | 23 | 84 | 1.90e-15 | 76.3 |
MsaG042851 | MtrunA17_Chr2g0288601 | 61.111 | 54 | 21 | 0 | 37 | 90 | 72 | 125 | 2.31e-15 | 72.0 |
MsaG042851 | MtrunA17_Chr1g0162931 | 62.264 | 53 | 20 | 0 | 37 | 89 | 19 | 71 | 2.74e-15 | 75.1 |
MsaG042851 | MtrunA17_Chr8g0366281 | 58.929 | 56 | 23 | 0 | 37 | 92 | 174 | 229 | 4.41e-15 | 75.5 |
MsaG042851 | MtrunA17_Chr5g0410741 | 58.929 | 56 | 23 | 0 | 37 | 92 | 220 | 275 | 5.90e-15 | 75.5 |
MsaG042851 | MtrunA17_Chr1g0175081 | 49.091 | 55 | 28 | 0 | 38 | 92 | 24 | 78 | 1.11e-14 | 69.3 |
MsaG042851 | MtrunA17_Chr1g0154261 | 57.143 | 56 | 24 | 0 | 37 | 92 | 127 | 182 | 1.20e-14 | 73.6 |
MsaG042851 | MtrunA17_Chr8g0379121 | 53.571 | 56 | 26 | 0 | 37 | 92 | 112 | 167 | 1.60e-14 | 74.3 |
MsaG042851 | MtrunA17_Chr2g0320231 | 55.357 | 56 | 25 | 0 | 37 | 92 | 98 | 153 | 2.99e-14 | 73.2 |
MsaG042851 | MtrunA17_Chr7g0258531 | 37.500 | 128 | 68 | 4 | 36 | 158 | 213 | 333 | 3.09e-14 | 72.8 |
MsaG042851 | MtrunA17_Chr4g0031961 | 53.623 | 69 | 30 | 2 | 23 | 90 | 117 | 184 | 2.14e-13 | 70.1 |
MsaG042851 | MtrunA17_Chr2g0283951 | 58.000 | 50 | 21 | 0 | 37 | 86 | 90 | 139 | 2.86e-13 | 70.1 |
MsaG042851 | MtrunA17_Chr1g0161431 | 61.818 | 55 | 20 | 1 | 36 | 90 | 200 | 253 | 3.15e-13 | 70.9 |
MsaG042851 | MtrunA17_Chr7g0255711 | 61.818 | 55 | 20 | 1 | 36 | 90 | 91 | 144 | 4.06e-13 | 68.9 |
MsaG042851 | MtrunA17_Chr1g0198601 | 60.000 | 55 | 22 | 0 | 36 | 90 | 211 | 265 | 7.51e-13 | 68.9 |
MsaG042851 | MtrunA17_Chr4g0067981 | 57.627 | 59 | 24 | 1 | 32 | 90 | 211 | 268 | 8.81e-13 | 69.3 |
MsaG042851 | MtrunA17_Chr2g0294911 | 54.237 | 59 | 26 | 1 | 32 | 90 | 207 | 264 | 1.51e-12 | 68.6 |
MsaG042851 | MtrunA17_Chr5g0402631 | 60.000 | 55 | 22 | 0 | 36 | 90 | 214 | 268 | 2.55e-12 | 67.0 |
MsaG042851 | MtrunA17_Chr5g0422621 | 58.182 | 55 | 23 | 0 | 36 | 90 | 198 | 252 | 6.36e-12 | 65.9 |
MsaG042851 | MtrunA17_Chr4g0009901 | 52.542 | 59 | 27 | 1 | 32 | 90 | 164 | 221 | 8.46e-12 | 64.7 |
MsaG042851 | MtrunA17_Chr4g0045361 | 55.172 | 58 | 26 | 0 | 33 | 90 | 271 | 328 | 2.85e-11 | 64.3 |
MsaG042851 | MtrunA17_Chr4g0009981 | 53.448 | 58 | 26 | 1 | 32 | 89 | 112 | 168 | 4.90e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042851 | AT1G79430.2 | 54.918 | 366 | 134 | 10 | 4 | 346 | 1 | 358 | 8.68e-116 | 340 |
MsaG042851 | AT1G79430.1 | 48.173 | 301 | 126 | 9 | 68 | 346 | 1 | 293 | 6.59e-72 | 225 |
MsaG042851 | AT3G12730.1 | 68.421 | 152 | 43 | 2 | 25 | 171 | 12 | 163 | 5.75e-67 | 211 |
MsaG042851 | AT4G13640.1 | 63.218 | 174 | 45 | 4 | 26 | 186 | 27 | 194 | 3.76e-64 | 206 |
MsaG042851 | AT3G24120.1 | 62.222 | 180 | 46 | 5 | 25 | 191 | 30 | 200 | 2.04e-63 | 204 |
MsaG042851 | AT4G13640.2 | 62.147 | 177 | 45 | 5 | 26 | 186 | 27 | 197 | 4.53e-62 | 200 |
MsaG042851 | AT3G24120.2 | 61.202 | 183 | 46 | 6 | 25 | 191 | 30 | 203 | 3.04e-61 | 198 |
MsaG042851 | AT5G18240.1 | 53.081 | 211 | 70 | 7 | 25 | 211 | 34 | 239 | 6.21e-57 | 190 |
MsaG042851 | AT5G18240.4 | 53.081 | 211 | 70 | 7 | 25 | 211 | 34 | 239 | 6.21e-57 | 190 |
MsaG042851 | AT3G04030.3 | 52.850 | 193 | 71 | 4 | 25 | 205 | 34 | 218 | 1.17e-55 | 187 |
MsaG042851 | AT5G18240.5 | 52.133 | 211 | 70 | 8 | 25 | 211 | 34 | 237 | 1.28e-53 | 181 |
MsaG042851 | AT3G04030.2 | 51.813 | 193 | 72 | 5 | 25 | 205 | 34 | 217 | 1.34e-52 | 179 |
MsaG042851 | AT5G18240.2 | 50.711 | 211 | 69 | 8 | 25 | 211 | 34 | 233 | 2.44e-50 | 173 |
MsaG042851 | AT5G18240.3 | 50.711 | 211 | 69 | 8 | 25 | 211 | 34 | 233 | 2.44e-50 | 173 |
MsaG042851 | AT3G04030.1 | 55.621 | 169 | 57 | 4 | 25 | 181 | 34 | 196 | 5.36e-49 | 169 |
MsaG042851 | AT1G69580.1 | 49.412 | 170 | 72 | 2 | 29 | 184 | 27 | 196 | 2.10e-47 | 163 |
MsaG042851 | AT1G69580.2 | 49.123 | 171 | 72 | 2 | 29 | 184 | 27 | 197 | 3.01e-47 | 163 |
MsaG042851 | AT5G45580.2 | 42.534 | 221 | 102 | 6 | 26 | 221 | 13 | 233 | 4.85e-46 | 158 |
MsaG042851 | AT5G45580.1 | 42.857 | 217 | 99 | 6 | 30 | 221 | 1 | 217 | 4.70e-45 | 155 |
MsaG042851 | AT2G01060.1 | 58.333 | 132 | 53 | 1 | 36 | 167 | 15 | 144 | 2.98e-44 | 154 |
MsaG042851 | AT3G12730.2 | 61.468 | 109 | 37 | 2 | 68 | 171 | 1 | 109 | 6.91e-37 | 131 |
MsaG042851 | AT3G13040.3 | 44.172 | 163 | 76 | 5 | 22 | 171 | 218 | 378 | 6.55e-34 | 130 |
MsaG042851 | AT3G13040.1 | 44.172 | 163 | 76 | 5 | 22 | 171 | 218 | 378 | 6.55e-34 | 130 |
MsaG042851 | AT3G13040.2 | 44.172 | 163 | 76 | 5 | 22 | 171 | 218 | 378 | 6.55e-34 | 130 |
MsaG042851 | AT4G28610.1 | 45.588 | 136 | 64 | 3 | 36 | 167 | 225 | 354 | 1.49e-33 | 128 |
MsaG042851 | AT5G29000.1 | 38.202 | 178 | 106 | 3 | 13 | 190 | 168 | 341 | 2.24e-32 | 124 |
MsaG042851 | AT5G29000.3 | 38.202 | 178 | 106 | 3 | 13 | 190 | 168 | 341 | 2.24e-32 | 124 |
MsaG042851 | AT5G29000.2 | 38.202 | 178 | 106 | 3 | 13 | 190 | 211 | 384 | 5.03e-32 | 124 |
MsaG042851 | AT5G06800.2 | 45.522 | 134 | 70 | 2 | 36 | 167 | 192 | 324 | 3.31e-30 | 119 |
MsaG042851 | AT3G04450.4 | 43.704 | 135 | 70 | 3 | 36 | 167 | 198 | 329 | 3.55e-30 | 119 |
MsaG042851 | AT3G04450.2 | 43.704 | 135 | 70 | 3 | 36 | 167 | 198 | 329 | 3.55e-30 | 119 |
MsaG042851 | AT5G06800.1 | 46.617 | 133 | 65 | 3 | 36 | 167 | 192 | 319 | 4.32e-30 | 118 |
MsaG042851 | AT3G04450.1 | 42.963 | 135 | 71 | 2 | 36 | 167 | 238 | 369 | 4.72e-30 | 119 |
MsaG042851 | AT3G04030.5 | 46.000 | 150 | 61 | 4 | 68 | 205 | 1 | 142 | 1.37e-28 | 113 |
MsaG042851 | AT2G20400.2 | 39.103 | 156 | 93 | 1 | 36 | 191 | 231 | 384 | 1.59e-27 | 112 |
MsaG042851 | AT2G20400.1 | 38.365 | 159 | 89 | 2 | 36 | 191 | 231 | 383 | 1.63e-27 | 111 |
MsaG042851 | AT5G18240.6 | 43.452 | 168 | 60 | 8 | 68 | 211 | 1 | 157 | 8.72e-24 | 100 |
MsaG042851 | AT3G04030.4 | 42.667 | 150 | 60 | 5 | 68 | 205 | 1 | 136 | 2.72e-22 | 95.9 |
MsaG042851 | AT2G01060.2 | 49.485 | 97 | 47 | 1 | 71 | 167 | 1 | 95 | 4.16e-21 | 91.3 |
MsaG042851 | AT2G06020.1 | 59.375 | 64 | 26 | 0 | 29 | 92 | 79 | 142 | 7.81e-21 | 91.7 |
MsaG042851 | AT5G06800.3 | 59.649 | 57 | 23 | 0 | 36 | 92 | 192 | 248 | 5.49e-18 | 83.2 |
MsaG042851 | AT5G29000.4 | 48.750 | 80 | 38 | 2 | 13 | 92 | 211 | 287 | 1.90e-17 | 82.4 |
MsaG042851 | AT3G04450.3 | 56.140 | 57 | 25 | 0 | 36 | 92 | 238 | 294 | 3.37e-17 | 81.6 |
MsaG042851 | AT1G14600.1 | 50.685 | 73 | 31 | 1 | 22 | 89 | 4 | 76 | 1.67e-16 | 78.6 |
MsaG042851 | AT2G40260.1 | 60.714 | 56 | 22 | 0 | 37 | 92 | 83 | 138 | 4.29e-16 | 79.3 |
MsaG042851 | AT2G42660.1 | 58.929 | 56 | 23 | 0 | 37 | 92 | 51 | 106 | 5.99e-16 | 77.0 |
MsaG042851 | AT4G04605.1 | 58.491 | 53 | 22 | 0 | 37 | 89 | 15 | 67 | 6.69e-16 | 76.3 |
MsaG042851 | AT2G02060.2 | 57.627 | 59 | 25 | 0 | 35 | 93 | 28 | 86 | 1.48e-15 | 75.9 |
MsaG042851 | AT2G02060.1 | 57.627 | 59 | 25 | 0 | 35 | 93 | 28 | 86 | 1.48e-15 | 75.9 |
MsaG042851 | AT1G32240.2 | 56.667 | 60 | 26 | 0 | 37 | 96 | 214 | 273 | 4.84e-15 | 75.9 |
MsaG042851 | AT5G16560.1 | 56.667 | 60 | 26 | 0 | 37 | 96 | 220 | 279 | 5.55e-15 | 75.9 |
MsaG042851 | AT1G32240.1 | 58.929 | 56 | 23 | 0 | 37 | 92 | 214 | 269 | 6.23e-15 | 75.5 |
MsaG042851 | AT2G38300.1 | 57.143 | 56 | 24 | 0 | 37 | 92 | 55 | 110 | 6.73e-15 | 75.1 |
MsaG042851 | AT5G42630.2 | 57.143 | 56 | 24 | 0 | 37 | 92 | 106 | 161 | 1.33e-14 | 72.4 |
MsaG042851 | AT5G42630.1 | 57.143 | 56 | 24 | 0 | 37 | 92 | 106 | 161 | 1.92e-14 | 73.2 |
MsaG042851 | AT4G17695.1 | 42.857 | 84 | 45 | 1 | 37 | 117 | 165 | 248 | 2.46e-14 | 73.2 |
MsaG042851 | AT3G46640.2 | 55.714 | 70 | 27 | 2 | 24 | 90 | 129 | 197 | 4.21e-14 | 72.8 |
MsaG042851 | AT3G46640.1 | 55.714 | 70 | 27 | 2 | 24 | 90 | 129 | 197 | 4.21e-14 | 72.8 |
MsaG042851 | AT3G46640.3 | 55.714 | 70 | 27 | 2 | 24 | 90 | 129 | 197 | 5.31e-14 | 72.4 |
MsaG042851 | AT5G59570.2 | 54.286 | 70 | 28 | 2 | 24 | 90 | 126 | 194 | 8.84e-14 | 71.2 |
MsaG042851 | AT5G59570.1 | 54.286 | 70 | 28 | 2 | 24 | 90 | 126 | 194 | 8.84e-14 | 71.2 |
MsaG042851 | AT5G05090.1 | 61.818 | 55 | 20 | 1 | 36 | 90 | 81 | 134 | 1.72e-13 | 70.1 |
MsaG042851 | AT3G10760.1 | 61.818 | 55 | 20 | 1 | 36 | 90 | 105 | 158 | 2.57e-13 | 70.5 |
MsaG042851 | AT4G04580.1 | 47.059 | 68 | 33 | 1 | 37 | 104 | 15 | 79 | 4.53e-13 | 67.0 |
MsaG042851 | AT2G40970.1 | 58.621 | 58 | 23 | 1 | 33 | 90 | 102 | 158 | 9.95e-13 | 67.8 |
MsaG042851 | AT4G37180.1 | 55.172 | 58 | 26 | 0 | 38 | 95 | 212 | 269 | 1.08e-12 | 68.6 |
MsaG042851 | AT4G37180.2 | 55.172 | 58 | 26 | 0 | 38 | 95 | 219 | 276 | 1.13e-12 | 68.6 |
MsaG042851 | AT3G25790.1 | 60.000 | 50 | 20 | 0 | 41 | 90 | 201 | 250 | 4.45e-12 | 67.0 |
MsaG042851 | AT5G58080.1 | 55.172 | 58 | 25 | 1 | 33 | 90 | 191 | 247 | 5.45e-12 | 67.4 |
MsaG042851 | AT3G16857.3 | 56.364 | 55 | 23 | 1 | 36 | 90 | 167 | 220 | 9.50e-12 | 66.6 |
MsaG042851 | AT1G49560.1 | 52.941 | 68 | 31 | 1 | 36 | 102 | 192 | 259 | 1.04e-11 | 65.5 |
MsaG042851 | AT3G16857.2 | 56.364 | 55 | 23 | 1 | 36 | 90 | 237 | 290 | 1.18e-11 | 66.2 |
MsaG042851 | AT3G16857.1 | 56.364 | 55 | 23 | 1 | 36 | 90 | 237 | 290 | 1.20e-11 | 66.2 |
MsaG042851 | AT2G01760.3 | 54.545 | 55 | 24 | 1 | 36 | 90 | 135 | 188 | 2.25e-11 | 64.3 |
MsaG042851 | AT5G44190.1 | 55.556 | 54 | 23 | 1 | 36 | 89 | 147 | 199 | 5.17e-11 | 63.9 |
MsaG042851 | AT5G44190.2 | 55.556 | 54 | 23 | 1 | 36 | 89 | 147 | 199 | 6.03e-11 | 63.5 |
MsaG042851 | AT1G13300.1 | 54.545 | 55 | 25 | 0 | 36 | 90 | 181 | 235 | 6.43e-11 | 63.2 |
Find 79 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTTTCCACTTCCATTAAA+AGG | 0.118507 | 8:+28458027 | None:intergenic |
TCATTATCATTCCAAATTAT+TGG | 0.120463 | 8:+28458003 | None:intergenic |
AATGATTCACCTTTGAAATT+AGG | 0.181239 | 8:+28457925 | None:intergenic |
TGATCTTAGGCTTCATGATT+TGG | 0.243321 | 8:-28457983 | MsaT042851.1:CDS |
ATCATAGTTGAGGGCTTCTT+TGG | 0.252047 | 8:+28460678 | None:intergenic |
GTGGAAAGAGTCCAATAATT+TGG | 0.261771 | 8:-28458014 | MsaT042851.1:CDS |
GTCCATCGAAGCCGAGGTTT+TGG | 0.292562 | 8:+28460594 | None:intergenic |
TTTGGAATGATAATGATCTT+AGG | 0.294293 | 8:-28457996 | MsaT042851.1:CDS |
AAAATACATGCAAAGTATAT+TGG | 0.312337 | 8:-28458322 | MsaT042851.1:CDS |
AATGATGAAAATTTGTTTGT+TGG | 0.313875 | 8:-28458066 | MsaT042851.1:CDS |
ATTCAATGAGCAATCTATTA+AGG | 0.315644 | 8:-28459980 | MsaT042851.1:CDS |
CAGCATCAACAAAGCGTTCA+TGG | 0.328267 | 8:+28460562 | None:intergenic |
CCACCTTAAGAGCCATCTTC+AGG | 0.346223 | 8:-28460170 | MsaT042851.1:intron |
GATCTTAGGCTTCATGATTT+GGG | 0.360986 | 8:-28457982 | MsaT042851.1:CDS |
TTTGAACTGCAAAGAAATAC+TGG | 0.365692 | 8:-28459828 | MsaT042851.1:CDS |
TAATTTCAAAGGTGAATCAT+TGG | 0.367186 | 8:-28457923 | MsaT042851.1:CDS |
ATAGAGAGGCCAACCCTTGA+TGG | 0.379955 | 8:-28458111 | MsaT042851.1:CDS |
AAAACAATCATGAGGGTTAT+GGG | 0.394376 | 8:-28460214 | MsaT042851.1:CDS |
AAAGCTTATAACACACTTGC+AGG | 0.397756 | 8:-28458297 | MsaT042851.1:CDS |
GTTGATGCTGTTGCTCAGCT+TGG | 0.397802 | 8:-28460549 | MsaT042851.1:CDS |
AAACCTGAAGATGGCTCTTA+AGG | 0.399926 | 8:+28460167 | None:intergenic |
TTTCAAGATCTTAACATTTG+TGG | 0.407965 | 8:-28458168 | MsaT042851.1:CDS |
TTGCTCATTGAATTCCTTGT+GGG | 0.416474 | 8:+28459990 | None:intergenic |
ACAAAATCTTTCATGTCAGC+TGG | 0.419465 | 8:+28458216 | None:intergenic |
GCAAATTTCAAGGGTATCAA+TGG | 0.423797 | 8:-28458252 | MsaT042851.1:CDS |
ATTTGTTTGTTGGAAAGAAA+AGG | 0.433652 | 8:-28458056 | MsaT042851.1:CDS |
GAGCCTCAATCCTCAGTTGA+AGG | 0.436360 | 8:+28458349 | None:intergenic |
AGCTGCAGCTGCAAATTTCA+AGG | 0.439611 | 8:-28458262 | MsaT042851.1:CDS |
AAATGAGGAAAATTATTAAG+AGG | 0.450258 | 8:+28458189 | None:intergenic |
TTTGATCCATCTGTGAAGCT+TGG | 0.458634 | 8:-28457838 | MsaT042851.1:CDS |
GGTAGAAGCTCATCACCATT+TGG | 0.458779 | 8:-28457781 | MsaT042851.1:CDS |
GCTGCAACAGCATTGATCAT+AGG | 0.461064 | 8:+28457805 | None:intergenic |
GATGCTGTTGCTCAGCTTGG+AGG | 0.468617 | 8:-28460546 | MsaT042851.1:CDS |
AATTAGTATTCTCAACCAAA+TGG | 0.471739 | 8:+28457766 | None:intergenic |
TCTTTCCACTTCCATTAAAA+GGG | 0.471840 | 8:+28458028 | None:intergenic |
GATGGCTCTTAAGGTGGTAA+AGG | 0.478682 | 8:+28460176 | None:intergenic |
TTGAAATTAGGAACATCATC+AGG | 0.480806 | 8:+28457937 | None:intergenic |
TGAGAATTCATCATAGTTGA+GGG | 0.480954 | 8:+28460669 | None:intergenic |
ATAGTTGAGGGCTTCTTTGG+AGG | 0.483070 | 8:+28460681 | None:intergenic |
ATCCAAAACCTCGGCTTCGA+TGG | 0.484201 | 8:-28460596 | MsaT042851.1:CDS |
TAGGCATTATAATTCCATCA+AGG | 0.485394 | 8:+28458097 | None:intergenic |
ATGTGTGTTCAAGGTGACTC+TGG | 0.488847 | 8:-28460636 | MsaT042851.1:CDS |
GATAGACCCATGTGTGTTCA+AGG | 0.494833 | 8:-28460645 | MsaT042851.1:CDS |
CATTAATAGAAATTTAGGCT+TGG | 0.499746 | 8:-28460021 | MsaT042851.1:intron |
AGGCATTATAATTCCATCAA+GGG | 0.502907 | 8:+28458098 | None:intergenic |
TAGTTGAGGGCTTCTTTGGA+GGG | 0.504455 | 8:+28460682 | None:intergenic |
TTTGTGTTCAAACCTGAAGA+TGG | 0.506495 | 8:+28460158 | None:intergenic |
GATGATGTTCCTAATTTCAA+AGG | 0.507643 | 8:-28457934 | MsaT042851.1:CDS |
ATGGCTCTTAAGGTGGTAAA+GGG | 0.519319 | 8:+28460177 | None:intergenic |
ATTATAATTCCATCAAGGGT+TGG | 0.522631 | 8:+28458102 | None:intergenic |
ATGATCAATGCTGTTGCAGC+TGG | 0.528955 | 8:-28457802 | MsaT042851.1:CDS |
GGCACCTCTTCTTCTATGAC+TGG | 0.530737 | 8:-28459807 | MsaT042851.1:CDS |
ATGTTAAGATCTTGAAAATG+AGG | 0.534145 | 8:+28458174 | None:intergenic |
CACACTTGCAGGTGAAAACA+TGG | 0.534297 | 8:-28458286 | MsaT042851.1:CDS |
ATGAGAATTCATCATAGTTG+AGG | 0.541419 | 8:+28460668 | None:intergenic |
CAAAATCTTTCATGTCAGCT+GGG | 0.542662 | 8:+28458217 | None:intergenic |
CATGAGGGTTATGGGTGTGA+AGG | 0.546666 | 8:-28460206 | MsaT042851.1:CDS |
TTCAAAAGCACCTTCAACTG+AGG | 0.553005 | 8:-28458359 | MsaT042851.1:CDS |
TTGGATCAGTGGTGAGAACA+AGG | 0.553644 | 8:+28460613 | None:intergenic |
AAGGGTATCAATGGAACTCA+AGG | 0.564059 | 8:-28458243 | MsaT042851.1:CDS |
GTTATTCCAAGCTTCACAGA+TGG | 0.570892 | 8:+28457832 | None:intergenic |
AATGAGCAATCTATTAAGGA+TGG | 0.585044 | 8:-28459976 | MsaT042851.1:CDS |
GCGACCAGTCATAGAAGAAG+AGG | 0.586760 | 8:+28459803 | None:intergenic |
ATTGCTCATTGAATTCCTTG+TGG | 0.590023 | 8:+28459989 | None:intergenic |
ATGAGGGTTATGGGTGTGAA+GGG | 0.590465 | 8:-28460205 | MsaT042851.1:CDS |
CCTGAAGATGGCTCTTAAGG+TGG | 0.594196 | 8:+28460170 | None:intergenic |
TCGACGGTCCATCGAAGCCG+AGG | 0.596295 | 8:+28460588 | None:intergenic |
GCACCTTCAACTGAGGATTG+AGG | 0.601274 | 8:-28458352 | MsaT042851.1:CDS |
AGAGTCACCTTGAACACACA+TGG | 0.606753 | 8:+28460638 | None:intergenic |
TGCTCATTGAATTCCTTGTG+GGG | 0.607189 | 8:+28459991 | None:intergenic |
GCTGCAGCTGCAAATTTCAA+GGG | 0.607262 | 8:-28458261 | MsaT042851.1:CDS |
TCTATTAAGGATGGTATGAG+AGG | 0.614631 | 8:-28459967 | MsaT042851.1:intron |
GCTTGGAAAGCAACCCCACA+AGG | 0.615422 | 8:-28460004 | MsaT042851.1:CDS |
ATCTTCATCACAACATAGAG+AGG | 0.631722 | 8:-28458125 | MsaT042851.1:CDS |
AAGACTGCATGAACAACTAG+AGG | 0.656489 | 8:-28459317 | MsaT042851.1:intron |
CAACTGAGGATTGAGGCTCA+AGG | 0.660551 | 8:-28458345 | MsaT042851.1:CDS |
TCACCACTGATCCAAAACCT+CGG | 0.679105 | 8:-28460605 | MsaT042851.1:CDS |
AAAGCGTTCATGGAGTTCGA+CGG | 0.684910 | 8:+28460572 | None:intergenic |
GAGTCACCTTGAACACACAT+GGG | 0.714712 | 8:+28460639 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 28457777 | 28460718 | 28457777 | ID=MsaG042851 |
Chr8 | mRNA | 28457777 | 28460718 | 28457777 | ID=MsaT042851.1;Parent=MsaG042851 |
Chr8 | exon | 28457777 | 28458382 | 28457777 | ID=MsaT042851.1.exon6;Parent=MsaT042851.1 |
Chr8 | CDS | 28457777 | 28458382 | 28457777 | ID=cds.MsaT042851.1;Parent=MsaT042851.1 |
Chr8 | exon | 28459318 | 28459360 | 28459318 | ID=MsaT042851.1.exon5;Parent=MsaT042851.1 |
Chr8 | CDS | 28459318 | 28459360 | 28459318 | ID=cds.MsaT042851.1;Parent=MsaT042851.1 |
Chr8 | exon | 28459792 | 28459858 | 28459792 | ID=MsaT042851.1.exon4;Parent=MsaT042851.1 |
Chr8 | CDS | 28459792 | 28459858 | 28459792 | ID=cds.MsaT042851.1;Parent=MsaT042851.1 |
Chr8 | exon | 28459968 | 28460034 | 28459968 | ID=MsaT042851.1.exon3;Parent=MsaT042851.1 |
Chr8 | CDS | 28459968 | 28460034 | 28459968 | ID=cds.MsaT042851.1;Parent=MsaT042851.1 |
Chr8 | exon | 28460171 | 28460247 | 28460171 | ID=MsaT042851.1.exon2;Parent=MsaT042851.1 |
Chr8 | CDS | 28460171 | 28460247 | 28460171 | ID=cds.MsaT042851.1;Parent=MsaT042851.1 |
Chr8 | exon | 28460538 | 28460718 | 28460538 | ID=MsaT042851.1.exon1;Parent=MsaT042851.1 |
Chr8 | CDS | 28460538 | 28460718 | 28460538 | ID=cds.MsaT042851.1;Parent=MsaT042851.1 |
Gene Sequence |
Protein sequence |