AlfalfaGEDB | MsaG042882

M. sativa ssp. caerulea / MsaG042882

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042882	XP_039687084.1	94.262	122	7	0	1	122	1	122	5.84e-79	238

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042882	tr\|G7INX6\|G7INX6_MEDTR	94.262	122	7	0	1	122	1	122	2.79e-79	238

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG042882	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG042882	MtrunA17_Chr2g0281511	94.262	122	7	0	1	122	1	122	5.37e-83	238
MsaG042882	MtrunA17_Chr2g0309121	86.885	122	15	1	1	122	1	121	3.49e-74	216
MsaG042882	MtrunA17_Chr3g0081891	95.000	80	4	0	1	80	1	80	2.77e-51	157
MsaG042882	MtrunA17_Chr7g0276661	34.615	130	67	4	7	119	38	166	9.91e-20	79.7
MsaG042882	MtrunA17_Chr0c01g0489371	43.956	91	49	1	22	110	224	314	6.46e-18	77.4
MsaG042882	MtrunA17_Chr8g0356961	42.697	89	49	1	24	110	77	165	3.13e-17	73.2
MsaG042882	MtrunA17_Chr8g0372431	28.866	97	69	0	24	120	6	102	7.42e-16	67.8
MsaG042882	MtrunA17_Chr5g0430431	36.667	90	47	1	37	116	165	254	1.23e-14	67.8
MsaG042882	MtrunA17_Chr5g0434641	37.363	91	55	1	22	110	208	298	1.53e-13	65.1
MsaG042882	MtrunA17_Chr8g0356951	40.659	91	50	3	24	110	217	307	4.21e-13	63.9

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 23 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCGATGTTCATTAT+TGG	0.262235	8:+29049928	MsaT042882.1:CDS
AAGTCAATGGTACTGATTTA+GGG	0.335811	8:+29049898	MsaT042882.1:CDS
ACGGTAGCATACATCCTATT+AGG	0.440754	8:-29050307	None:intergenic
AGAAATACATAGGGAGAGGA+TGG	0.573439	8:+29050218	MsaT042882.1:CDS
AGCATGCATCAGAAATACAT+AGG	0.544935	8:+29050208	MsaT042882.1:CDS
ATCACAGTCATAAGATTTAC+CGG	0.342234	8:-29050167	None:intergenic
CATCAGAAATACATAGGGAG+AGG	0.580360	8:+29050214	MsaT042882.1:CDS
CCATTCTCAGCAACACGTCG+AGG	0.662672	8:-29050100	None:intergenic
CCTCGACGTGTTGCTGAGAA+TGG	0.340072	8:+29050100	MsaT042882.1:CDS
CGGTCAATAATCCTCCTAAT+AGG	0.355854	8:+29050293	MsaT042882.1:CDS

Showing 1 to 10 of 23 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	29049879	29050345	29049879	ID=MsaG042882
Chr8	mRNA	29049879	29050345	29049879	ID=MsaT042882.1;Parent=MsaG042882
Chr8	exon	29049879	29049995	29049879	ID=MsaT042882.1.exon1;Parent=MsaT042882.1
Chr8	CDS	29049879	29049995	29049879	ID=cds.MsaT042882.1;Parent=MsaT042882.1
Chr8	exon	29050094	29050345	29050094	ID=MsaT042882.1.exon2;Parent=MsaT042882.1
Chr8	CDS	29050094	29050345	29050094	ID=cds.MsaT042882.1;Parent=MsaT042882.1

Gene Sequence	>MsaT042882.1 ATGAATGAGATTGGAGTTGAAGTCAATGGTACTGATTTAGGGAATGTTCAAAATGTCGATGTTCATTATTGGAAGTATAATGTTACTACTTCTATTTTGGATGGAAACAATGTTTTGCATTTTCCTCGACGTGTTGCTGAGAATGGTTTGTATATCAATCAATCTAAAATTCTCCTTTTTGATGAAGAAACCGGTAAATCTTATGACTGTGATGTGCACACTGCGTCAAAAAGCATGCATCAGAAATACATAGGGAGAGGATGGTACGACTTTGTTCTTGAAAAGGGCCTAAAAGTTGGTGACGTTATTTTGTTCACGGTCAATAATCCTCCTAATAGGATGTATGCTACCGTCGTTAACTGGGACTGA
Protein sequence	>MsaT042882.1 MNEIGVEVNGTDLGNVQNVDVHYWKYNVTTSILDGNNVLHFPRRVAENGLYINQSKILLFDEETGKSYDCDVHTASKSMHQKYIGRGWYDFVLEKGLKVGDVILFTVNNPPNRMYATVVNWD*