Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042900 | XP_013445133.2 | 95.749 | 541 | 23 | 0 | 1 | 541 | 23 | 563 | 0.0 | 1061 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042900 | sp|A0A1B1WAJ0|RAD1_LOTJA | 47.150 | 386 | 195 | 5 | 150 | 530 | 127 | 508 | 6.22e-111 | 342 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042900 | tr|A0A396GM97|A0A396GM97_MEDTR | 95.749 | 541 | 23 | 0 | 1 | 541 | 23 | 563 | 0.0 | 1061 |
Gene ID | Type | Classification |
---|---|---|
MsaG042900 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042900 | MtrunA17_Chr8g0357601 | 95.749 | 541 | 23 | 0 | 1 | 541 | 23 | 563 | 0.0 | 1061 |
MsaG042900 | MtrunA17_Chr4g0057891 | 46.234 | 385 | 192 | 7 | 154 | 530 | 143 | 520 | 1.37e-104 | 323 |
MsaG042900 | MtrunA17_Chr7g0224271 | 41.562 | 397 | 195 | 6 | 154 | 530 | 294 | 673 | 1.60e-93 | 299 |
MsaG042900 | MtrunA17_Chr8g0376381 | 36.951 | 387 | 215 | 9 | 153 | 533 | 162 | 525 | 4.21e-78 | 255 |
MsaG042900 | MtrunA17_Chr3g0110971 | 35.427 | 398 | 215 | 11 | 154 | 531 | 213 | 588 | 7.90e-77 | 253 |
MsaG042900 | MtrunA17_Chr3g0125811 | 34.921 | 378 | 227 | 6 | 161 | 530 | 204 | 570 | 7.62e-67 | 226 |
MsaG042900 | MtrunA17_Chr2g0306641 | 34.837 | 399 | 220 | 12 | 152 | 534 | 117 | 491 | 1.71e-66 | 223 |
MsaG042900 | MtrunA17_Chr5g0445331 | 34.367 | 387 | 231 | 7 | 156 | 530 | 157 | 532 | 3.98e-66 | 223 |
MsaG042900 | MtrunA17_Chr5g0447691 | 33.854 | 384 | 233 | 8 | 156 | 530 | 173 | 544 | 1.22e-65 | 222 |
MsaG042900 | MtrunA17_Chr1g0159461 | 34.656 | 378 | 228 | 6 | 161 | 530 | 226 | 592 | 1.38e-64 | 221 |
MsaG042900 | MtrunA17_Chr3g0101141 | 32.812 | 384 | 237 | 7 | 156 | 530 | 171 | 542 | 5.18e-64 | 218 |
MsaG042900 | MtrunA17_Chr2g0319091 | 35.325 | 385 | 226 | 8 | 156 | 530 | 208 | 579 | 1.32e-62 | 215 |
MsaG042900 | MtrunA17_Chr4g0038761 | 37.302 | 378 | 220 | 9 | 164 | 538 | 88 | 451 | 4.13e-59 | 202 |
MsaG042900 | MtrunA17_Chr4g0031711 | 30.521 | 403 | 262 | 6 | 140 | 532 | 341 | 735 | 1.08e-58 | 207 |
MsaG042900 | MtrunA17_Chr4g0076091 | 32.817 | 387 | 234 | 7 | 155 | 529 | 170 | 542 | 1.90e-58 | 203 |
MsaG042900 | MtrunA17_Chr7g0245601 | 35.501 | 369 | 218 | 8 | 164 | 530 | 442 | 792 | 2.30e-57 | 205 |
MsaG042900 | MtrunA17_Chr4g0057291 | 32.990 | 388 | 240 | 11 | 152 | 529 | 284 | 661 | 1.73e-56 | 200 |
MsaG042900 | MtrunA17_Chr4g0031721 | 30.827 | 399 | 251 | 8 | 148 | 532 | 299 | 686 | 1.94e-56 | 200 |
MsaG042900 | MtrunA17_Chr4g0031701 | 31.409 | 433 | 270 | 12 | 111 | 527 | 201 | 622 | 3.11e-56 | 199 |
MsaG042900 | MtrunA17_Chr4g0031731 | 31.148 | 427 | 272 | 9 | 114 | 527 | 205 | 622 | 4.61e-56 | 198 |
MsaG042900 | MtrunA17_Chr2g0328391 | 31.795 | 390 | 244 | 6 | 154 | 532 | 293 | 671 | 2.31e-54 | 194 |
MsaG042900 | MtrunA17_Chr4g0031741 | 31.250 | 384 | 242 | 7 | 155 | 529 | 279 | 649 | 3.79e-53 | 191 |
MsaG042900 | MtrunA17_Chr2g0328341 | 29.157 | 415 | 255 | 11 | 134 | 532 | 249 | 640 | 4.95e-52 | 187 |
MsaG042900 | MtrunA17_Chr2g0290241 | 30.130 | 385 | 249 | 7 | 155 | 530 | 52 | 425 | 2.36e-51 | 181 |
MsaG042900 | MtrunA17_Chr2g0328411 | 29.534 | 386 | 251 | 6 | 154 | 531 | 283 | 655 | 2.51e-51 | 186 |
MsaG042900 | MtrunA17_Chr2g0328431 | 28.682 | 387 | 255 | 5 | 154 | 532 | 283 | 656 | 2.90e-49 | 180 |
MsaG042900 | MtrunA17_Chr1g0183641 | 33.590 | 390 | 219 | 11 | 152 | 529 | 115 | 476 | 3.82e-49 | 176 |
MsaG042900 | MtrunA17_Chr7g0238891 | 29.397 | 398 | 261 | 6 | 144 | 532 | 356 | 742 | 5.10e-49 | 181 |
MsaG042900 | MtrunA17_Chr2g0328381 | 29.442 | 394 | 236 | 10 | 155 | 529 | 270 | 640 | 9.80e-49 | 178 |
MsaG042900 | MtrunA17_Chr2g0294461 | 31.105 | 389 | 251 | 10 | 153 | 530 | 203 | 585 | 1.02e-45 | 169 |
MsaG042900 | MtrunA17_Chr2g0294471 | 31.783 | 387 | 248 | 10 | 153 | 530 | 197 | 576 | 1.06e-45 | 169 |
MsaG042900 | MtrunA17_Chr3g0085681 | 29.508 | 427 | 228 | 12 | 161 | 530 | 26 | 436 | 1.17e-44 | 163 |
MsaG042900 | MtrunA17_Chr3g0114841 | 33.007 | 409 | 230 | 15 | 152 | 533 | 112 | 503 | 1.55e-44 | 164 |
MsaG042900 | MtrunA17_Chr2g0328401 | 30.746 | 335 | 213 | 5 | 155 | 483 | 285 | 606 | 1.23e-43 | 164 |
MsaG042900 | MtrunA17_Chr5g0424131 | 29.014 | 517 | 307 | 18 | 44 | 533 | 19 | 502 | 1.21e-42 | 159 |
MsaG042900 | MtrunA17_Chr5g0401131 | 28.796 | 382 | 254 | 7 | 161 | 530 | 115 | 490 | 4.27e-42 | 157 |
MsaG042900 | MtrunA17_Chr7g0236851 | 31.858 | 339 | 206 | 8 | 200 | 529 | 334 | 656 | 2.49e-40 | 155 |
MsaG042900 | MtrunA17_Chr1g0200401 | 29.612 | 412 | 229 | 17 | 154 | 530 | 74 | 459 | 6.54e-39 | 148 |
MsaG042900 | MtrunA17_Chr2g0328361 | 28.173 | 394 | 216 | 13 | 155 | 529 | 269 | 614 | 9.19e-39 | 150 |
MsaG042900 | MtrunA17_Chr1g0194621 | 28.502 | 414 | 254 | 14 | 139 | 530 | 125 | 518 | 1.56e-38 | 148 |
MsaG042900 | MtrunA17_Chr4g0038851 | 45.270 | 148 | 79 | 1 | 385 | 530 | 322 | 469 | 1.08e-37 | 144 |
MsaG042900 | MtrunA17_Chr4g0038851 | 34.375 | 224 | 127 | 7 | 153 | 372 | 41 | 248 | 4.76e-27 | 114 |
MsaG042900 | MtrunA17_Chr5g0396491 | 43.421 | 152 | 84 | 1 | 382 | 531 | 328 | 479 | 6.97e-37 | 142 |
MsaG042900 | MtrunA17_Chr5g0396491 | 33.333 | 228 | 124 | 8 | 153 | 372 | 49 | 256 | 2.25e-26 | 112 |
MsaG042900 | MtrunA17_Chr6g0468561 | 31.620 | 389 | 229 | 14 | 159 | 530 | 294 | 662 | 8.26e-36 | 142 |
MsaG042900 | MtrunA17_Chr4g0039661 | 28.205 | 390 | 240 | 12 | 157 | 530 | 190 | 555 | 1.27e-34 | 137 |
MsaG042900 | MtrunA17_Chr4g0053901 | 27.404 | 416 | 247 | 12 | 161 | 529 | 60 | 467 | 4.56e-34 | 134 |
MsaG042900 | MtrunA17_Chr2g0328371 | 30.078 | 256 | 158 | 5 | 239 | 483 | 2 | 247 | 8.13e-34 | 129 |
MsaG042900 | MtrunA17_Chr3g0085361 | 29.155 | 343 | 180 | 10 | 243 | 530 | 16 | 350 | 4.80e-33 | 129 |
MsaG042900 | MtrunA17_Chr5g0401421 | 26.379 | 417 | 252 | 13 | 161 | 529 | 36 | 445 | 5.60e-33 | 131 |
MsaG042900 | MtrunA17_Chr2g0329591 | 28.718 | 390 | 245 | 10 | 161 | 530 | 75 | 451 | 5.90e-32 | 128 |
MsaG042900 | MtrunA17_Chr7g0270031 | 25.773 | 388 | 265 | 12 | 152 | 530 | 181 | 554 | 3.61e-28 | 118 |
MsaG042900 | MtrunA17_Chr8g0383981 | 26.329 | 395 | 256 | 13 | 157 | 540 | 136 | 506 | 1.62e-26 | 113 |
MsaG042900 | MtrunA17_Chr7g0230771 | 24.352 | 386 | 254 | 10 | 157 | 530 | 372 | 731 | 6.10e-21 | 97.1 |
MsaG042900 | MtrunA17_Chr7g0230731 | 23.316 | 386 | 258 | 10 | 157 | 530 | 369 | 728 | 5.40e-20 | 94.0 |
MsaG042900 | MtrunA17_Chr4g0012071 | 22.922 | 397 | 263 | 12 | 147 | 530 | 185 | 551 | 8.91e-17 | 83.6 |
MsaG042900 | MtrunA17_Chr8g0344101 | 22.111 | 398 | 263 | 12 | 161 | 531 | 224 | 601 | 1.47e-16 | 82.8 |
MsaG042900 | MtrunA17_Chr8g0373561 | 23.514 | 387 | 261 | 14 | 156 | 530 | 178 | 541 | 6.00e-15 | 77.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG042900 | AT1G66350.1 | 38.381 | 383 | 207 | 11 | 154 | 531 | 149 | 507 | 7.15e-79 | 257 |
MsaG042900 | AT3G03450.1 | 37.662 | 385 | 220 | 10 | 154 | 532 | 177 | 547 | 3.60e-76 | 251 |
MsaG042900 | AT1G14920.1 | 37.984 | 387 | 213 | 11 | 154 | 533 | 166 | 532 | 7.59e-76 | 249 |
MsaG042900 | AT2G01570.1 | 36.761 | 389 | 221 | 11 | 154 | 536 | 218 | 587 | 7.08e-75 | 248 |
MsaG042900 | AT5G17490.1 | 31.568 | 491 | 291 | 12 | 69 | 533 | 48 | 519 | 9.03e-68 | 228 |
MsaG042900 | AT5G48150.1 | 33.247 | 385 | 235 | 7 | 156 | 530 | 118 | 490 | 5.39e-63 | 214 |
MsaG042900 | AT5G48150.4 | 33.247 | 385 | 235 | 7 | 156 | 530 | 118 | 490 | 5.39e-63 | 214 |
MsaG042900 | AT5G48150.2 | 33.247 | 385 | 235 | 7 | 156 | 530 | 118 | 490 | 5.39e-63 | 214 |
MsaG042900 | AT5G48150.3 | 33.247 | 385 | 235 | 7 | 156 | 530 | 118 | 490 | 5.39e-63 | 214 |
MsaG042900 | AT2G04890.1 | 34.115 | 384 | 225 | 7 | 156 | 530 | 49 | 413 | 2.40e-62 | 210 |
MsaG042900 | AT3G54220.1 | 37.197 | 371 | 210 | 8 | 164 | 529 | 297 | 649 | 3.69e-61 | 213 |
MsaG042900 | AT1G21450.1 | 33.158 | 380 | 236 | 5 | 159 | 530 | 224 | 593 | 1.73e-60 | 210 |
MsaG042900 | AT1G50600.3 | 33.333 | 384 | 235 | 7 | 156 | 530 | 155 | 526 | 1.82e-60 | 208 |
MsaG042900 | AT1G50600.1 | 33.333 | 384 | 235 | 7 | 156 | 530 | 226 | 597 | 1.13e-59 | 208 |
MsaG042900 | AT1G50600.2 | 33.333 | 384 | 235 | 7 | 156 | 530 | 230 | 601 | 1.29e-59 | 208 |
MsaG042900 | AT5G41920.1 | 34.474 | 380 | 230 | 9 | 154 | 530 | 37 | 400 | 7.73e-57 | 196 |
MsaG042900 | AT1G07530.1 | 31.362 | 389 | 244 | 8 | 156 | 533 | 392 | 768 | 5.33e-56 | 201 |
MsaG042900 | AT2G29060.2 | 31.592 | 402 | 252 | 7 | 140 | 529 | 264 | 654 | 2.43e-55 | 197 |
MsaG042900 | AT2G29060.1 | 31.592 | 402 | 252 | 7 | 140 | 529 | 301 | 691 | 5.48e-55 | 197 |
MsaG042900 | AT4G17230.1 | 32.737 | 391 | 242 | 7 | 149 | 530 | 147 | 525 | 2.57e-54 | 192 |
MsaG042900 | AT4G17230.2 | 32.737 | 391 | 242 | 7 | 149 | 530 | 147 | 525 | 2.57e-54 | 192 |
MsaG042900 | AT2G29065.1 | 27.801 | 482 | 321 | 10 | 65 | 529 | 156 | 627 | 3.59e-52 | 188 |
MsaG042900 | AT1G07520.2 | 27.511 | 458 | 290 | 9 | 85 | 529 | 100 | 528 | 1.08e-50 | 182 |
MsaG042900 | AT1G07520.4 | 27.511 | 458 | 290 | 9 | 85 | 529 | 100 | 528 | 1.08e-50 | 182 |
MsaG042900 | AT1G07520.3 | 28.747 | 407 | 269 | 7 | 136 | 529 | 295 | 693 | 6.78e-50 | 183 |
MsaG042900 | AT1G07520.1 | 28.747 | 407 | 269 | 7 | 136 | 529 | 294 | 692 | 7.40e-50 | 182 |
MsaG042900 | AT5G59450.1 | 28.406 | 433 | 283 | 10 | 111 | 532 | 184 | 600 | 2.51e-49 | 180 |
MsaG042900 | AT3G46600.1 | 29.008 | 393 | 252 | 8 | 152 | 532 | 204 | 581 | 1.08e-47 | 175 |
MsaG042900 | AT3G46600.3 | 29.008 | 393 | 252 | 8 | 152 | 532 | 172 | 549 | 2.47e-47 | 173 |
MsaG042900 | AT3G46600.2 | 29.091 | 385 | 246 | 8 | 161 | 533 | 5 | 374 | 2.48e-47 | 169 |
MsaG042900 | AT1G55580.1 | 32.086 | 374 | 217 | 10 | 191 | 530 | 75 | 445 | 1.13e-46 | 169 |
MsaG042900 | AT1G63100.1 | 30.726 | 358 | 232 | 7 | 151 | 503 | 243 | 589 | 3.09e-46 | 172 |
MsaG042900 | AT1G63100.2 | 30.726 | 358 | 232 | 7 | 151 | 503 | 268 | 614 | 3.54e-46 | 172 |
MsaG042900 | AT2G37650.2 | 28.316 | 392 | 261 | 6 | 150 | 533 | 325 | 704 | 8.79e-46 | 171 |
MsaG042900 | AT2G37650.1 | 28.316 | 392 | 261 | 6 | 150 | 533 | 337 | 716 | 8.93e-46 | 171 |
MsaG042900 | AT4G37650.1 | 27.561 | 410 | 271 | 12 | 141 | 530 | 126 | 529 | 5.70e-42 | 158 |
MsaG042900 | AT5G66770.1 | 29.716 | 387 | 240 | 11 | 157 | 530 | 217 | 584 | 6.18e-39 | 150 |
MsaG042900 | AT5G52510.1 | 31.845 | 336 | 204 | 8 | 217 | 530 | 308 | 640 | 5.10e-38 | 148 |
MsaG042900 | AT4G08250.1 | 29.337 | 392 | 249 | 12 | 152 | 529 | 99 | 476 | 8.95e-38 | 145 |
MsaG042900 | AT3G50650.1 | 30.362 | 359 | 215 | 10 | 188 | 530 | 203 | 542 | 1.11e-37 | 146 |
MsaG042900 | AT1G50420.1 | 43.137 | 153 | 85 | 1 | 380 | 530 | 327 | 479 | 5.38e-35 | 137 |
MsaG042900 | AT1G50420.1 | 31.390 | 223 | 143 | 3 | 153 | 375 | 50 | 262 | 1.85e-28 | 119 |
MsaG042900 | AT3G49950.1 | 26.972 | 393 | 247 | 13 | 161 | 529 | 31 | 407 | 1.70e-31 | 126 |
MsaG042900 | AT3G60630.1 | 26.710 | 307 | 201 | 10 | 238 | 530 | 326 | 622 | 6.90e-22 | 100 |
MsaG042900 | AT2G45160.1 | 23.392 | 513 | 325 | 19 | 54 | 530 | 159 | 639 | 1.08e-18 | 90.1 |
MsaG042900 | AT4G00150.1 | 25.561 | 446 | 285 | 14 | 94 | 533 | 153 | 557 | 1.52e-18 | 89.4 |
MsaG042900 | AT3G13840.1 | 23.881 | 402 | 256 | 15 | 150 | 530 | 138 | 510 | 1.11e-16 | 83.6 |
MsaG042900 | AT4G36710.1 | 22.938 | 388 | 271 | 12 | 152 | 530 | 117 | 485 | 1.90e-16 | 82.4 |
Find 102 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGAAATGAACGGCAATTT+TGG | 0.207673 | 8:+29962129 | MsaT042900.1:CDS |
CTCAATACACATAATTGATT+TGG | 0.221010 | 8:+29962545 | MsaT042900.1:CDS |
ATCCTAATTGGACTATTTCT+TGG | 0.252505 | 8:-29963032 | None:intergenic |
TGATCTTGTTCCATTCTTGC+AGG | 0.253249 | 8:-29961811 | None:intergenic |
TTCCTTTCCAACCAAGTAAA+AGG | 0.254662 | 8:-29963271 | None:intergenic |
CACAATGGACCTTTCTTTCT+TGG | 0.260406 | 8:+29962948 | MsaT042900.1:CDS |
TTTGTTACTTAATAAAATTT+TGG | 0.272132 | 8:+29962263 | MsaT042900.1:CDS |
TTCAATGGCCTTCGCTAATA+AGG | 0.276663 | 8:+29962583 | MsaT042900.1:CDS |
ACAACACCTTATATTACTTT+TGG | 0.300835 | 8:+29962474 | MsaT042900.1:CDS |
TTGGCCTTGTCGAGTTCTTC+AGG | 0.314594 | 8:+29962282 | MsaT042900.1:CDS |
TCATGTCTCTCCATTCTATC+AGG | 0.340101 | 8:-29963113 | None:intergenic |
GACACTTTCATTCATATAGA+AGG | 0.344185 | 8:-29961758 | None:intergenic |
ATGATGTTTCTTTGATTACT+AGG | 0.356608 | 8:+29962415 | MsaT042900.1:CDS |
ATGAAACCAAAAGTAATATA+AGG | 0.362911 | 8:-29962480 | None:intergenic |
CCTCCAAAGCTCAGGATAAC+AGG | 0.367635 | 8:+29962630 | MsaT042900.1:CDS |
TCAATACACATAATTGATTT+GGG | 0.373143 | 8:+29962546 | MsaT042900.1:CDS |
CCTGTTATCCTGAGCTTTGG+AGG | 0.384703 | 8:-29962630 | None:intergenic |
TTGGTGAATGATGATGTCTT+TGG | 0.396171 | 8:+29962030 | MsaT042900.1:CDS |
CCTGAGCTTTGGAGGCCCCT+CGG | 0.396208 | 8:-29962622 | None:intergenic |
GCAGGGCAAAACCTTCTGAT+TGG | 0.405005 | 8:-29961793 | None:intergenic |
ATATACTTTGTCATGTGAAA+AGG | 0.405685 | 8:+29963244 | MsaT042900.1:CDS |
ACCTTCTGATTGGGAAATCA+AGG | 0.406185 | 8:-29961783 | None:intergenic |
TGCCAAGAAATAGTCCAATT+AGG | 0.408355 | 8:+29963030 | MsaT042900.1:CDS |
TGACTTGGTCCATACGCTGC+TGG | 0.410075 | 8:+29962197 | MsaT042900.1:CDS |
CTGAGCTTTGGAGGCCCCTC+GGG | 0.412847 | 8:-29962621 | None:intergenic |
CAGGGCAAAACCTTCTGATT+GGG | 0.412946 | 8:-29961792 | None:intergenic |
CTGGCTTGTGCTGAGGCCGT+TGG | 0.430572 | 8:+29962216 | MsaT042900.1:CDS |
TCTACAACTGTGAGTGCAAT+TGG | 0.437872 | 8:-29962912 | None:intergenic |
AAGTAATATAAGGTGTTGTT+TGG | 0.439313 | 8:-29962470 | None:intergenic |
AATCCTGTTATCCTGAGCTT+TGG | 0.439914 | 8:-29962633 | None:intergenic |
GATCAATGGAGAAGACAGTT+AGG | 0.456219 | 8:+29963143 | MsaT042900.1:CDS |
TGTAGAGGAAGCACTCTCAT+TGG | 0.457377 | 8:+29962707 | MsaT042900.1:CDS |
CTGATATTATGCGAAATTCA+AGG | 0.458546 | 8:-29962737 | None:intergenic |
GACATGAAAGAGTAGATCAA+TGG | 0.459154 | 8:+29963129 | MsaT042900.1:CDS |
ATGGACCTTTCTTTCTTGGT+AGG | 0.464231 | 8:+29962952 | MsaT042900.1:CDS |
GATCTTGTTCCATTCTTGCA+GGG | 0.465440 | 8:-29961810 | None:intergenic |
GCTATATGCCAAGGATCAAA+AGG | 0.466005 | 8:+29962516 | MsaT042900.1:CDS |
CTATTTGAAAATACATTATG+TGG | 0.466093 | 8:-29962369 | None:intergenic |
GAAAGGAAGGTCTATTATGA+TGG | 0.467802 | 8:+29963286 | MsaT042900.1:CDS |
GTAGAGGAAGCACTCTCATT+GGG | 0.469254 | 8:+29962708 | MsaT042900.1:CDS |
TCTTCATCCTCCATTGTGGT+TGG | 0.471305 | 8:-29962060 | None:intergenic |
CAGCACAAGCCAGCAGCGTA+TGG | 0.480061 | 8:-29962206 | None:intergenic |
GCCTTGGTTCATACCGAGAC+TGG | 0.481981 | 8:-29962172 | None:intergenic |
GCCCCTCGGGCCTCGAAGCA+AGG | 0.482725 | 8:-29962608 | None:intergenic |
GATTACTAGGGAGAATAAGT+TGG | 0.489189 | 8:+29962428 | MsaT042900.1:CDS |
CCGAGGGGCCTCCAAAGCTC+AGG | 0.495752 | 8:+29962622 | MsaT042900.1:CDS |
CATCATCAAGAACTGTCTCT+TGG | 0.496418 | 8:-29961852 | None:intergenic |
TTGCCACAGCATTGAAGAGT+AGG | 0.496678 | 8:+29962334 | MsaT042900.1:CDS |
AGAAGACAGTTAGGAAGAGC+AGG | 0.504894 | 8:+29963152 | MsaT042900.1:CDS |
TGATGTTTCTTTGATTACTA+GGG | 0.506416 | 8:+29962416 | MsaT042900.1:CDS |
CCGAGACTGGCTTGTGATTG+TGG | 0.515572 | 8:-29962159 | None:intergenic |
CTTTCTGTTTATGATTGTGA+TGG | 0.518538 | 8:+29963221 | MsaT042900.1:CDS |
CTATTATGATGGCTTCTGCT+TGG | 0.519258 | 8:+29963297 | MsaT042900.1:CDS |
TTCTCGATTGTAAGAAGAGA+AGG | 0.521917 | 8:-29962771 | None:intergenic |
TATACTTTGTCATGTGAAAA+GGG | 0.523287 | 8:+29963245 | MsaT042900.1:CDS |
TAATAAGGAACCTTGCTTCG+AGG | 0.526138 | 8:+29962598 | MsaT042900.1:CDS |
AGCAATATTTGATTCTCTTG+AGG | 0.528353 | 8:+29963001 | MsaT042900.1:CDS |
ATTCACCTTCTCTCAAGTTG+AGG | 0.528790 | 8:-29962794 | None:intergenic |
TATGGACCAAGTCAAGGCCT+TGG | 0.530054 | 8:-29962188 | None:intergenic |
AACCTTGCTTCGAGGCCCGA+GGG | 0.530262 | 8:+29962606 | MsaT042900.1:CDS |
ACACATAATTGATTTGGGAA+TGG | 0.530660 | 8:+29962551 | MsaT042900.1:CDS |
AAGTCATCAACTTCTGAAGA+AGG | 0.531009 | 8:-29961919 | None:intergenic |
TACGCTGCTGGCTTGTGCTG+AGG | 0.531958 | 8:+29962209 | MsaT042900.1:CDS |
AGAAACCTACCAAGAAAGAA+AGG | 0.532154 | 8:-29962957 | None:intergenic |
CAATGCTGTGGCAAAACAGT+AGG | 0.543728 | 8:-29962325 | None:intergenic |
ACCTTGATTTCCCAATCAGA+AGG | 0.544346 | 8:+29961782 | MsaT042900.1:CDS |
CAAGAACTGTCTCTTGGTCA+TGG | 0.547218 | 8:-29961846 | None:intergenic |
GAATGGAGCATACTCTTCAA+TGG | 0.549472 | 8:+29962568 | MsaT042900.1:CDS |
TGTTGATAGCTTCATCAACA+TGG | 0.554822 | 8:+29961942 | MsaT042900.1:CDS |
GAACCTTGCTTCGAGGCCCG+AGG | 0.559070 | 8:+29962605 | MsaT042900.1:CDS |
TAGCATGAATTTGCTTGTAG+AGG | 0.564272 | 8:+29962692 | MsaT042900.1:CDS |
TAACTCTTCATCCTCCATTG+TGG | 0.569659 | 8:-29962064 | None:intergenic |
AGAAGAAATTTGCAACATTG+TGG | 0.571117 | 8:+29963079 | MsaT042900.1:CDS |
TGCAACATTGTGGCTTGTGA+GGG | 0.571918 | 8:+29963089 | MsaT042900.1:CDS |
TTGCAACATTGTGGCTTGTG+AGG | 0.576539 | 8:+29963088 | MsaT042900.1:CDS |
GAGAAGAATCATCAAAGTCA+AGG | 0.576589 | 8:+29961991 | MsaT042900.1:CDS |
GACGAAGAAGTTGAAATGAA+CGG | 0.577431 | 8:+29962120 | MsaT042900.1:CDS |
TGGTTGTAGAGACAACAATC+AGG | 0.581021 | 8:+29962236 | MsaT042900.1:CDS |
TTGTGAGGGTCCTGATAGAA+TGG | 0.581071 | 8:+29963103 | MsaT042900.1:CDS |
GCTTGACTTGTACACTTGAG+TGG | 0.583171 | 8:-29963188 | None:intergenic |
GCAAGGTTCCTTATTAGCGA+AGG | 0.585586 | 8:-29962591 | None:intergenic |
ATTTCGCATAATATCAGAGT+CGG | 0.585893 | 8:+29962743 | MsaT042900.1:CDS |
TATGAACCAAGGCCTTGACT+TGG | 0.587577 | 8:+29962182 | MsaT042900.1:CDS |
CCACAATCACAAGCCAGTCT+CGG | 0.590657 | 8:+29962159 | MsaT042900.1:CDS |
GCAGCGTATGGACCAAGTCA+AGG | 0.593569 | 8:-29962194 | None:intergenic |
GATGGCTTCTGCTTGGCAAG+TGG | 0.608972 | 8:+29963304 | MsaT042900.1:CDS |
ATTGTTGTCTCTACAACCAA+CGG | 0.609920 | 8:-29962232 | None:intergenic |
GAGAACCTCAACTTGAGAGA+AGG | 0.614360 | 8:+29962789 | MsaT042900.1:CDS |
ATCTCCTGAAGAACTCGACA+AGG | 0.615478 | 8:-29962286 | None:intergenic |
GCAAATGAAGCTATATGCCA+AGG | 0.622841 | 8:+29962507 | MsaT042900.1:CDS |
CAATGGAAGACTTAAACATG+TGG | 0.631529 | 8:+29961731 | None:intergenic |
AGAAGGTAATAAACAAGGAG+TGG | 0.631583 | 8:-29961902 | None:intergenic |
GCCAGTCTCGGTATGAACCA+AGG | 0.638041 | 8:+29962171 | MsaT042900.1:CDS |
TAACCTACTCTTCAATGCTG+TGG | 0.646682 | 8:-29962337 | None:intergenic |
ACCTTGCTTCGAGGCCCGAG+GGG | 0.649136 | 8:+29962607 | MsaT042900.1:CDS |
TGGATATGATCCAACCACAA+TGG | 0.666133 | 8:+29962050 | MsaT042900.1:CDS |
TCTGAAGAAGGTAATAAACA+AGG | 0.670330 | 8:-29961907 | None:intergenic |
CAAGAAAGAAAGGTCCATTG+TGG | 0.670675 | 8:-29962947 | None:intergenic |
ATATGATCCAACCACAATGG+AGG | 0.672820 | 8:+29962053 | MsaT042900.1:CDS |
GAGCAAGACACAAACCACAA+TGG | 0.673924 | 8:+29962933 | MsaT042900.1:CDS |
AAATATGTGAAAGAAAGTAG+AGG | 0.673967 | 8:+29962849 | MsaT042900.1:CDS |
AGAATGGAACAAGATCAAGA+AGG | 0.680580 | 8:+29961817 | MsaT042900.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 29961733 | 29963358 | 29961733 | ID=MsaG042900 |
Chr8 | mRNA | 29961733 | 29963358 | 29961733 | ID=MsaT042900.1;Parent=MsaG042900 |
Chr8 | exon | 29961733 | 29963358 | 29961733 | ID=MsaT042900.1.exon1;Parent=MsaT042900.1 |
Chr8 | CDS | 29961733 | 29963358 | 29961733 | ID=cds.MsaT042900.1;Parent=MsaT042900.1 |
Gene Sequence |
Protein sequence |