AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG042913

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042913 MtrunA17_Chr8g0357771 94.475 181 10 0 1 181 1 181 4.56e-124 347
MsaG042913 MtrunA17_Chr8g0356071 62.722 169 57 2 1 169 1 163 8.01e-68 204
MsaG042913 MtrunA17_Chr1g0180591 55.429 175 78 0 1 175 1 175 8.43e-68 204
MsaG042913 MtrunA17_Chr1g0169761 55.429 175 78 0 1 175 1 175 1.49e-66 201
MsaG042913 MtrunA17_Chr1g0175601 55.682 176 77 1 1 175 1 176 3.78e-63 192
MsaG042913 MtrunA17_Chr8g0376821 54.819 166 75 0 1 166 1 166 3.47e-62 190
MsaG042913 MtrunA17_Chr4g0074101 50.000 192 79 1 1 175 1 192 3.98e-61 188
MsaG042913 MtrunA17_Chr1g0175611 54.762 168 76 0 1 168 1 168 4.87e-61 187
MsaG042913 MtrunA17_Chr4g0052061 37.576 165 89 3 1 164 1 152 9.22e-27 99.4
MsaG042913 MtrunA17_Chr3g0119901 38.509 161 72 4 1 138 8 164 3.79e-25 96.7
MsaG042913 MtrunA17_Chr3g0085241 37.975 158 79 3 1 139 40 197 2.94e-24 95.1
MsaG042913 MtrunA17_Chr1g0206991 45.545 101 53 1 2 100 9 109 2.69e-23 91.3
MsaG042913 MtrunA17_Chr3g0099411 45.283 106 46 2 2 100 9 109 1.71e-22 90.1
MsaG042913 MtrunA17_Chr1g0206721 45.283 106 46 2 2 100 9 109 2.12e-22 90.1
MsaG042913 MtrunA17_Chr5g0419601 42.991 107 59 1 1 107 8 112 3.83e-22 89.4
MsaG042913 MtrunA17_Chr8g0379021 41.000 100 57 1 2 101 12 109 6.10e-22 87.4
MsaG042913 MtrunA17_Chr3g0099421 45.631 103 44 2 2 97 34 131 6.60e-22 89.4
MsaG042913 MtrunA17_Chr3g0089141 39.837 123 58 3 2 108 9 131 3.13e-21 87.0
MsaG042913 MtrunA17_Chr1g0206701 44.340 106 47 2 2 100 9 109 3.23e-21 87.0
MsaG042913 MtrunA17_Chr1g0208581 40.476 126 70 2 2 125 9 131 4.82e-21 86.3
MsaG042913 MtrunA17_Chr2g0325971 41.270 126 69 2 2 125 9 131 5.35e-21 86.3
MsaG042913 MtrunA17_Chr2g0292791 37.179 156 82 4 2 143 9 162 5.87e-21 86.3
MsaG042913 MtrunA17_Chr2g0333981 42.424 99 55 1 1 99 11 107 6.83e-21 84.7
MsaG042913 MtrunA17_Chr1g0208561 39.837 123 58 3 2 108 9 131 9.63e-21 85.5
MsaG042913 MtrunA17_Chr8g0355091 43.564 101 55 1 2 100 9 109 3.11e-20 84.3
MsaG042913 MtrunA17_Chr1g0149391 42.453 106 49 2 2 100 9 109 4.25e-20 84.0
MsaG042913 MtrunA17_Chr5g0422421 49.367 79 40 0 2 80 9 87 1.08e-19 83.2
MsaG042913 MtrunA17_Chr4g0052081 41.121 107 60 1 1 104 1 107 1.46e-19 81.3
MsaG042913 MtrunA17_Chr1g0188671 49.367 79 40 0 2 80 47 125 1.86e-19 83.2
MsaG042913 MtrunA17_Chr1g0187361 55.072 69 31 0 2 70 9 77 3.69e-19 81.6
MsaG042913 MtrunA17_Chr5g0422941 41.228 114 62 1 2 110 9 122 6.02e-19 80.9
MsaG042913 MtrunA17_Chr2g0300421 42.574 101 56 1 2 100 9 109 6.81e-19 79.3
MsaG042913 MtrunA17_Chr4g0018951 47.297 74 39 0 17 90 27 100 7.30e-19 79.3
MsaG042913 MtrunA17_Chr2g0317451 49.367 79 40 0 2 80 9 87 7.65e-19 80.9
MsaG042913 MtrunA17_Chr2g0317481 49.367 79 40 0 2 80 9 87 8.86e-19 80.5
MsaG042913 MtrunA17_Chr1g0206691 42.727 110 58 2 18 125 8 114 2.59e-18 79.0
MsaG042913 MtrunA17_Chr3g0089151 49.275 69 35 0 2 70 9 77 2.97e-18 76.6
MsaG042913 MtrunA17_Chr2g0300441 52.113 71 34 0 2 72 9 79 3.51e-18 79.0
MsaG042913 MtrunA17_Chr4g0049901 39.130 138 68 3 1 130 27 156 4.35e-18 79.0
MsaG042913 MtrunA17_Chr2g0279821 52.174 69 33 0 1 69 1 69 7.46e-18 78.2
MsaG042913 MtrunA17_Chr1g0187351 61.111 54 21 0 18 71 8 61 1.39e-17 73.2
MsaG042913 MtrunA17_Chr5g0427401 46.377 69 37 0 1 69 1 69 2.00e-17 76.6
MsaG042913 MtrunA17_Chr5g0411691 50.725 69 34 0 1 69 1 69 5.06e-17 75.9
MsaG042913 MtrunA17_Chr3g0142191 36.691 139 81 3 1 138 1 133 5.97e-17 75.5
MsaG042913 MtrunA17_Chr7g0238991 56.667 60 26 0 13 72 32 91 6.28e-17 75.9
MsaG042913 MtrunA17_Chr4g0020221 50.725 69 34 0 1 69 1 69 1.10e-16 75.1
MsaG042913 MtrunA17_Chr4g0049541 47.826 69 36 0 1 69 1 69 1.44e-16 74.3
MsaG042913 MtrunA17_Chr5g0420081 46.479 71 35 1 1 71 1 68 2.20e-16 73.9
MsaG042913 MtrunA17_Chr8g0351051 40.000 95 50 1 1 88 1 95 2.41e-16 74.3
MsaG042913 MtrunA17_Chr5g0427921 56.667 60 26 0 1 60 1 60 2.67e-16 69.7
MsaG042913 MtrunA17_Chr3g0097101 49.275 69 35 0 1 69 16 84 4.27e-16 73.6
MsaG042913 MtrunA17_Chr1g0204111 42.667 75 43 0 1 75 17 91 4.61e-16 73.6
MsaG042913 MtrunA17_Chr6g0474371 33.088 136 87 3 1 134 1 134 5.62e-16 72.4
MsaG042913 MtrunA17_Chr4g0071601 46.835 79 42 0 1 79 11 89 6.02e-16 72.0
MsaG042913 MtrunA17_Chr2g0284911 33.929 112 71 1 1 112 16 124 7.62e-16 73.2
MsaG042913 MtrunA17_Chr4g0061691 46.479 71 35 1 1 71 1 68 1.12e-15 72.0
MsaG042913 MtrunA17_Chr8g0366231 46.479 71 35 1 1 71 1 68 1.15e-15 72.4
MsaG042913 MtrunA17_Chr3g0111841 60.417 48 19 0 18 65 12 59 1.81e-15 67.8
MsaG042913 MtrunA17_Chr5g0404951 48.387 62 32 0 1 62 1 62 1.88e-15 71.6
MsaG042913 MtrunA17_Chr3g0077501 44.928 69 38 0 1 69 1 69 1.97e-15 71.2
MsaG042913 MtrunA17_Chr7g0220111 50.820 61 30 0 1 61 1 61 2.24e-15 71.6
MsaG042913 MtrunA17_Chr7g0246381 50.000 68 29 1 1 63 1 68 2.68e-15 67.4
MsaG042913 MtrunA17_Chr8g0351041 34.821 112 71 2 1 112 1 110 2.91e-15 69.7
MsaG042913 MtrunA17_Chr4g0057151 46.377 69 37 0 1 69 1 69 3.17e-15 70.5
MsaG042913 MtrunA17_Chr5g0420091 52.632 57 27 0 1 57 1 57 3.43e-15 70.5
MsaG042913 MtrunA17_Chr8g0380021 34.821 112 70 1 1 112 17 125 4.16e-15 70.9
MsaG042913 MtrunA17_Chr7g0220121 41.429 70 40 1 1 69 1 70 4.83e-15 70.9
MsaG042913 MtrunA17_Chr4g0061671 46.774 62 33 0 1 62 1 62 8.79e-15 68.9
MsaG042913 MtrunA17_Chr7g0246431 44.928 69 38 0 1 69 1 69 1.06e-14 69.3
MsaG042913 MtrunA17_Chr8g0351031 35.577 104 65 2 1 104 1 102 1.43e-14 68.9
MsaG042913 MtrunA17_Chr3g0122251 54.386 57 26 0 1 57 1 57 1.44e-14 69.3
MsaG042913 MtrunA17_Chr4g0018421 54.545 55 25 0 1 55 1 55 1.49e-14 68.6
MsaG042913 MtrunA17_Chr1g0173161 54.386 57 26 0 1 57 1 57 1.60e-14 65.5
MsaG042913 MtrunA17_Chr6g0455511 50.794 63 30 1 1 62 1 63 1.67e-14 69.3
MsaG042913 MtrunA17_Chr2g0308251 43.662 71 39 1 1 70 1 71 1.85e-14 65.5
MsaG042913 MtrunA17_Chr8g0377561 52.632 57 27 0 1 57 1 57 2.48e-14 65.5
MsaG042913 MtrunA17_Chr5g0412461 44.615 65 36 0 1 65 1 65 2.51e-14 68.6
MsaG042913 MtrunA17_Chr3g0111831 58.333 48 20 0 18 65 20 67 2.59e-14 65.1
MsaG042913 MtrunA17_Chr5g0412271 44.615 65 36 0 1 65 1 65 3.64e-14 68.2
MsaG042913 MtrunA17_Chr3g0111931 50.943 53 26 0 18 70 6 58 5.50e-14 65.1
MsaG042913 MtrunA17_Chr1g0164791 43.662 71 38 1 1 69 1 71 5.90e-14 67.4
MsaG042913 MtrunA17_Chr3g0134451 34.028 144 74 6 1 134 1 133 1.28e-13 67.4
MsaG042913 MtrunA17_Chr4g0044071 51.724 58 28 0 1 58 1 58 2.55e-13 63.2
MsaG042913 MtrunA17_Chr1g0166611 66.667 42 14 0 17 58 21 62 6.52e-13 62.8
MsaG042913 MtrunA17_Chr3g0125241 41.935 62 36 0 1 62 26 87 6.78e-13 64.3
MsaG042913 MtrunA17_Chr5g0425191 59.184 49 20 0 1 49 1 49 6.39e-12 59.3
MsaG042913 MtrunA17_Chr1g0159661 40.323 62 37 0 1 62 1 62 7.42e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042913 AT2G34440.1 40.000 175 89 4 1 162 1 172 1.06e-29 107
MsaG042913 AT2G24840.1 44.628 121 65 2 1 120 62 181 1.98e-28 107
MsaG042913 AT3G66656.1 45.528 123 65 1 1 121 1 123 6.78e-28 103
MsaG042913 AT5G60440.1 44.800 125 52 3 2 117 7 123 7.09e-25 98.2
MsaG042913 AT1G01530.1 46.018 113 58 3 1 112 6 116 2.17e-21 88.2
MsaG042913 AT1G47760.1 54.412 68 31 0 1 68 1 68 1.82e-20 84.3
MsaG042913 AT4G36590.1 41.732 127 64 4 2 120 7 131 1.81e-19 82.8
MsaG042913 AT3G57230.2 52.174 69 33 0 1 69 1 69 3.10e-19 80.1
MsaG042913 AT3G57230.1 52.174 69 33 0 1 69 1 69 9.02e-19 80.9
MsaG042913 AT3G57230.4 52.174 69 33 0 1 69 1 69 9.02e-19 80.9
MsaG042913 AT2G22630.1 53.623 69 32 0 1 69 1 69 1.01e-18 80.5
MsaG042913 AT2G22630.2 53.623 69 32 0 1 69 1 69 1.01e-18 80.5
MsaG042913 AT1G29962.1 48.611 72 37 0 2 73 8 79 1.02e-18 79.7
MsaG042913 AT4G37940.1 53.623 69 32 0 1 69 1 69 1.90e-18 79.7
MsaG042913 AT4G37940.4 53.623 69 32 0 1 69 1 69 2.47e-18 79.3
MsaG042913 AT3G61120.1 44.872 78 43 0 1 78 1 78 3.05e-18 79.7
MsaG042913 AT1G65360.1 40.496 121 60 4 1 114 6 121 3.33e-18 79.3
MsaG042913 AT1G28460.1 47.222 72 38 0 2 73 8 79 3.53e-18 78.2
MsaG042913 AT4G37940.3 53.623 69 32 0 1 69 1 69 4.45e-18 77.8
MsaG042913 AT3G04100.1 35.971 139 66 3 2 135 14 134 1.31e-17 77.4
MsaG042913 AT4G24540.1 33.094 139 83 2 1 135 1 133 1.38e-16 74.7
MsaG042913 AT1G72350.1 53.623 69 30 1 2 70 43 109 1.56e-16 74.7
MsaG042913 AT5G13790.1 40.741 108 53 2 1 106 1 99 1.89e-16 75.1
MsaG042913 AT1G69120.2 49.296 71 33 1 1 71 1 68 2.84e-16 74.3
MsaG042913 AT2G45650.1 46.377 69 37 0 1 69 1 69 2.99e-16 74.3
MsaG042913 AT3G57390.3 47.826 69 36 0 1 69 1 69 4.74e-16 73.6
MsaG042913 AT3G58780.4 31.250 160 101 5 1 160 16 166 5.76e-16 73.9
MsaG042913 AT5G13790.2 47.826 69 36 0 1 69 1 69 6.57e-16 73.9
MsaG042913 AT2G03710.3 36.471 170 88 7 1 158 1 162 6.65e-16 72.4
MsaG042913 AT1G69120.1 49.296 71 33 1 1 71 1 68 6.85e-16 73.6
MsaG042913 AT3G58780.1 32.298 161 97 6 1 161 16 164 7.89e-16 73.2
MsaG042913 AT3G57390.1 47.826 69 36 0 1 69 1 69 8.07e-16 73.2
MsaG042913 AT3G58780.5 32.298 161 97 6 1 161 22 170 9.55e-16 73.2
MsaG042913 AT2G22540.3 49.231 65 33 0 1 65 1 65 1.26e-15 72.4
MsaG042913 AT2G22540.1 49.231 65 33 0 1 65 1 65 1.26e-15 72.4
MsaG042913 AT2G14210.1 54.098 61 28 0 1 61 1 61 1.32e-15 72.4
MsaG042913 AT5G15800.1 35.465 172 87 6 1 158 1 162 1.37e-15 72.8
MsaG042913 AT4G09960.6 44.928 69 38 0 1 69 2 70 1.38e-15 72.4
MsaG042913 AT4G09960.1 44.928 69 38 0 1 69 1 69 1.53e-15 72.0
MsaG042913 AT4G09960.2 44.928 69 38 0 1 69 1 69 1.56e-15 72.0
MsaG042913 AT5G15800.2 35.465 172 87 6 1 158 1 162 1.57e-15 72.8
MsaG042913 AT2G03710.2 36.471 170 88 7 1 158 1 162 1.60e-15 72.4
MsaG042913 AT2G14210.2 54.098 61 28 0 1 61 1 61 1.71e-15 72.0
MsaG042913 AT2G03710.1 36.471 170 88 7 1 158 1 162 1.74e-15 72.4
MsaG042913 AT5G60910.1 46.479 71 35 1 1 71 1 68 1.81e-15 72.0
MsaG042913 AT4G09960.5 44.928 69 38 0 1 69 11 79 1.95e-15 72.0
MsaG042913 AT4G09960.3 44.928 69 38 0 1 69 27 95 2.72e-15 72.0
MsaG042913 AT2G45660.2 44.286 70 39 0 1 70 1 70 2.84e-15 70.1
MsaG042913 AT4G09960.4 44.928 69 38 0 1 69 96 164 2.98e-15 72.4
MsaG042913 AT1G46408.1 46.835 79 36 2 1 73 1 79 3.25e-15 71.6
MsaG042913 AT3G54340.1 50.000 62 31 0 1 62 1 62 3.33e-15 71.2
MsaG042913 AT2G42830.1 46.377 69 37 0 1 69 16 84 3.76e-15 71.2
MsaG042913 AT2G42830.2 46.377 69 37 0 1 69 16 84 4.06e-15 71.2
MsaG042913 AT2G45660.1 44.286 70 39 0 1 70 1 70 5.68e-15 70.5
MsaG042913 AT1G26310.1 48.387 62 32 0 1 62 1 62 6.72e-15 70.9
MsaG042913 AT1G71692.1 43.023 86 44 2 1 85 1 82 7.46e-15 70.1
MsaG042913 AT5G51860.2 43.662 71 40 0 1 71 1 71 8.87e-15 69.7
MsaG042913 AT5G51860.1 43.662 71 40 0 1 71 1 71 1.02e-14 69.7
MsaG042913 AT4G22950.2 46.377 69 37 0 1 69 1 69 1.08e-14 68.6
MsaG042913 AT1G28450.1 43.056 72 41 0 2 73 8 79 1.27e-14 68.9
MsaG042913 AT3G02310.2 50.820 61 30 0 1 61 1 61 1.33e-14 68.9
MsaG042913 AT5G65070.1 41.463 82 46 1 1 82 1 80 1.65e-14 68.9
MsaG042913 AT5G65070.4 35.714 112 68 2 1 110 1 110 1.66e-14 67.8
MsaG042913 AT5G10140.2 52.632 57 27 0 1 57 1 57 2.12e-14 67.8
MsaG042913 AT5G10140.4 52.632 57 27 0 1 57 1 57 2.22e-14 68.2
MsaG042913 AT3G58780.2 39.535 86 39 1 1 73 16 101 2.26e-14 69.3
MsaG042913 AT1G22130.1 49.296 71 35 1 1 70 1 71 2.41e-14 70.1
MsaG042913 AT5G51870.1 42.029 69 40 0 1 69 1 69 2.49e-14 68.6
MsaG042913 AT1G24260.1 50.820 61 30 0 1 61 1 61 2.74e-14 68.9
MsaG042913 AT5G10140.1 52.632 57 27 0 1 57 1 57 2.84e-14 68.2
MsaG042913 AT1G24260.2 50.820 61 30 0 1 61 1 61 2.97e-14 68.9
MsaG042913 AT4G18960.1 47.059 68 36 0 2 69 18 85 3.07e-14 68.9
MsaG042913 AT5G65070.3 43.590 78 41 2 1 76 1 77 3.12e-14 68.6
MsaG042913 AT3G30260.1 52.632 57 27 0 1 57 1 57 3.25e-14 68.9
MsaG042913 AT1G24260.3 50.820 61 30 0 1 61 1 61 3.50e-14 68.6
MsaG042913 AT4G37435.1 28.814 177 93 4 1 150 1 171 3.58e-14 67.8
MsaG042913 AT5G51870.2 32.903 155 82 4 1 146 1 142 3.90e-14 67.4
MsaG042913 AT5G10140.3 51.724 58 28 0 1 58 1 58 4.05e-14 67.4
MsaG042913 AT5G51870.5 32.903 155 82 4 1 146 24 165 4.69e-14 67.4
MsaG042913 AT3G02310.1 52.632 57 27 0 1 57 1 57 4.79e-14 68.6
MsaG042913 AT5G51870.4 42.029 69 40 0 1 69 1 69 5.16e-14 67.8
MsaG042913 AT3G58780.3 50.820 61 30 0 1 61 16 76 5.25e-14 68.6
MsaG042913 AT4G22950.3 46.377 69 37 0 1 69 1 69 5.43e-14 67.8
MsaG042913 AT4G22950.1 46.377 69 37 0 1 69 1 69 5.43e-14 67.8
MsaG042913 AT1G77980.1 44.706 85 42 2 1 84 1 81 5.53e-14 68.9
MsaG042913 AT5G65070.2 41.463 82 46 1 1 82 1 80 5.73e-14 67.8
MsaG042913 AT5G51870.3 42.029 69 40 0 1 69 11 79 6.51e-14 67.8
MsaG042913 AT5G20240.2 47.619 63 33 0 1 63 1 63 7.69e-14 65.9
MsaG042913 AT2G22540.2 50.877 57 28 0 1 57 1 57 7.88e-14 67.8
MsaG042913 AT5G20240.1 47.619 63 33 0 1 63 1 63 1.25e-13 66.6
MsaG042913 AT5G65070.5 41.463 82 46 1 1 82 1 80 1.28e-13 66.6
MsaG042913 AT5G23260.4 56.140 57 25 0 1 57 17 73 1.41e-13 67.4
MsaG042913 AT5G23260.2 56.140 57 25 0 1 57 1 57 1.42e-13 67.0
MsaG042913 AT1G60920.1 44.737 76 37 2 3 73 5 80 1.49e-13 66.2
MsaG042913 AT5G23260.1 56.140 57 25 0 1 57 17 73 1.51e-13 67.4
MsaG042913 AT4G11880.2 50.820 61 30 0 1 61 1 61 1.72e-13 65.9
MsaG042913 AT4G11880.3 50.820 61 30 0 1 61 1 61 1.72e-13 65.9
MsaG042913 AT5G23260.3 56.140 57 25 0 1 57 1 57 1.83e-13 66.6
MsaG042913 AT1G17310.1 57.407 54 21 1 17 70 63 114 3.59e-13 65.5
MsaG042913 AT4G11880.4 50.820 61 30 0 1 61 1 61 4.42e-13 65.5
MsaG042913 AT4G11880.1 50.820 61 30 0 1 61 1 61 4.42e-13 65.5
MsaG042913 AT1G17310.2 57.407 54 21 1 17 70 74 125 4.65e-13 65.5
MsaG042913 AT5G62165.17 39.130 69 42 0 1 69 1 69 5.08e-13 63.9
MsaG042913 AT5G62165.12 39.130 69 42 0 1 69 1 69 5.08e-13 63.9
MsaG042913 AT5G62165.11 39.130 69 42 0 1 69 1 69 5.08e-13 63.9
MsaG042913 AT5G65050.2 52.727 55 26 0 1 55 1 55 5.33e-13 64.3
MsaG042913 AT5G65060.3 54.545 55 25 0 1 55 1 55 9.05e-13 63.9
MsaG042913 AT5G65080.3 44.286 70 38 1 1 69 8 77 9.23e-13 63.9
MsaG042913 AT5G65060.1 54.545 55 25 0 1 55 1 55 1.03e-12 63.9
MsaG042913 AT5G62165.6 39.130 69 42 0 1 69 1 69 1.04e-12 63.2
MsaG042913 AT5G62165.9 39.130 69 42 0 1 69 1 69 1.04e-12 63.2
MsaG042913 AT5G62165.7 39.130 69 42 0 1 69 1 69 1.04e-12 63.2
MsaG042913 AT5G62165.8 39.130 69 42 0 1 69 1 69 1.04e-12 63.2
MsaG042913 AT5G62165.13 39.130 69 42 0 1 69 1 69 1.04e-12 63.2
MsaG042913 AT5G65060.2 54.545 55 25 0 1 55 1 55 1.23e-12 63.5
MsaG042913 AT5G62165.3 39.130 69 42 0 1 69 1 69 1.23e-12 63.9
MsaG042913 AT5G62165.1 39.130 69 42 0 1 69 1 69 1.23e-12 63.9
MsaG042913 AT5G62165.2 39.130 69 42 0 1 69 1 69 1.23e-12 63.9
MsaG042913 AT5G62165.10 39.130 69 42 0 1 69 1 69 1.29e-12 63.5
MsaG042913 AT5G62165.4 39.130 69 42 0 1 69 1 69 1.29e-12 63.5
MsaG042913 AT5G62165.14 39.130 69 42 0 1 69 1 69 1.55e-12 61.6
MsaG042913 AT5G65050.3 52.727 55 26 0 1 55 1 55 1.62e-12 63.5
MsaG042913 AT5G65050.1 52.727 55 26 0 1 55 1 55 1.84e-12 63.2
MsaG042913 AT5G65050.5 52.727 55 26 0 1 55 1 55 1.87e-12 63.2
MsaG042913 AT5G65080.2 48.214 56 29 0 1 56 8 63 4.05e-12 62.4
MsaG042913 AT5G49490.1 45.570 79 31 2 3 73 46 120 6.63e-12 62.8
MsaG042913 AT5G04640.1 32.812 128 73 3 3 117 5 132 6.84e-12 63.2
MsaG042913 AT1G31140.1 30.476 105 68 2 1 100 1 105 7.39e-12 62.0
MsaG042913 AT1G77950.3 37.647 85 48 2 1 84 1 81 1.33e-11 61.6
MsaG042913 AT1G77950.2 37.647 85 48 2 1 84 1 81 1.33e-11 61.6
MsaG042913 AT1G77950.1 37.647 85 48 2 1 84 1 81 1.33e-11 61.6
MsaG042913 AT1G77950.4 37.647 85 48 2 1 84 1 81 1.33e-11 61.6
MsaG042913 AT1G18750.4 41.096 73 41 1 1 71 1 73 2.07e-11 62.0
MsaG042913 AT1G18750.1 42.254 71 39 1 1 69 1 71 2.49e-11 61.6
MsaG042913 AT1G18750.3 41.096 73 41 1 1 71 1 73 2.65e-11 61.6

Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTCTCCTTCAAGAAATT+TGG 0.179978 8:+30293627 None:intergenic
GGAATAAGCCTTACTCTTTC+GGG 0.193517 8:-30293675 MsaT042913.1:CDS
CAGTCAGTTTGTATTCTTCT+AGG 0.201316 8:+30293476 None:intergenic
GGGAATAAGCCTTACTCTTT+CGG 0.251044 8:-30293676 MsaT042913.1:CDS
AGATTCATATGGGAAATTTA+AGG 0.261798 8:-30293428 MsaT042913.1:CDS
ATATGGGAAATTTAAGGAAA+TGG 0.366214 8:-30293422 MsaT042913.1:CDS
CTATTGTTGTGTTCTCCCTT+GGG 0.381427 8:-30293696 MsaT042913.1:CDS
GCTATTGTTGTGTTCTCCCT+TGG 0.400886 8:-30293697 MsaT042913.1:CDS
GAGGAAATGAAAGATTCATA+TGG 0.425146 8:-30293439 MsaT042913.1:CDS
ACATTCTCTAAGCGTCGAAC+AGG 0.429261 8:-30293769 MsaT042913.1:CDS
GTTACTTCTTGCAGAGAAAC+CGG 0.436314 8:-30293359 MsaT042913.1:CDS
GTTGCATCCAAATTTCTTGA+AGG 0.449324 8:-30293634 MsaT042913.1:CDS
AATGTAACCTGCCTTATGAT+AGG 0.459002 8:+30293787 None:intergenic
AACAAAGTCTCAAGAAAGAA+AGG 0.467261 8:-30293322 MsaT042913.1:CDS
ATGAACTTGCCATCTTGTGC+GGG 0.468340 8:-30293729 MsaT042913.1:CDS
AGCTTCTTATGCCATCATCT+AGG 0.477849 8:+30293602 None:intergenic
CTTGGGTGCCCGAAAGAGTA+AGG 0.491836 8:+30293667 None:intergenic
TAGGATCTCATCATGTGCCC+TGG 0.515236 8:+30293495 None:intergenic
TGTGCTAGCTGAACTAAAAG+AGG 0.527386 8:-30293530 MsaT042913.1:CDS
AGGAAATGAAAGATTCATAT+GGG 0.533599 8:-30293438 MsaT042913.1:CDS
AAGAGGCTGAAAATGAAGCC+AGG 0.537040 8:-30293513 MsaT042913.1:CDS
AATGAACTTGCCATCTTGTG+CGG 0.538350 8:-30293730 MsaT042913.1:CDS
ATGTAACCTGCCTTATGATA+GGG 0.543825 8:+30293788 None:intergenic
GGGTGAGAGACCCTATCATA+AGG 0.546640 8:-30293798 MsaT042913.1:CDS
GATGCAACATCATCAACACT+TGG 0.549337 8:+30293649 None:intergenic
AATTTCTGCCCCGCACAAGA+TGG 0.555860 8:+30293720 None:intergenic
CTTGCAGAGAAACCGGTGGT+TGG 0.563786 8:-30293352 MsaT042913.1:CDS
GGAGAGCTCAACCTAGATGA+TGG 0.566220 8:-30293613 MsaT042913.1:CDS
GTCGCAAAATTGCGATTGCG+AGG 0.570735 8:-30293819 MsaT042913.1:CDS
GAGAGACCCTATCATAAGGC+AGG 0.574297 8:-30293794 MsaT042913.1:CDS
GACTGAACTCACTCAACTTG+AGG 0.582374 8:-30293458 MsaT042913.1:CDS
AAGAGTAAGGCTTATTCCCA+AGG 0.590604 8:+30293680 None:intergenic
AGAGGCTGAAAATGAAGCCA+GGG 0.612352 8:-30293512 MsaT042913.1:CDS
TCGCAAAATTGCGATTGCGA+GGG 0.641127 8:-30293818 MsaT042913.1:CDS
TCGAACAGGATTATTCAAGA+AGG 0.647981 8:-30293755 MsaT042913.1:CDS
ATGCAACATCATCAACACTT+GGG 0.663273 8:+30293650 None:intergenic
AGAGTAAGGCTTATTCCCAA+GGG 0.672066 8:+30293681 None:intergenic
TGAACTTGCCATCTTGTGCG+GGG 0.674850 8:-30293728 MsaT042913.1:CDS
TTCTGAAGTTTCGAACAGAG+AGG 0.689485 8:-30293575 MsaT042913.1:CDS
ACTTCTTGCAGAGAAACCGG+TGG 0.709944 8:-30293356 MsaT042913.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 30293303 30293848 30293303 ID=MsaG042913
Chr8 mRNA 30293303 30293848 30293303 ID=MsaT042913.1;Parent=MsaG042913
Chr8 exon 30293303 30293848 30293303 ID=MsaT042913.1.exon1;Parent=MsaT042913.1
Chr8 CDS 30293303 30293848 30293303 ID=cds.MsaT042913.1;Parent=MsaT042913.1
Gene Sequence

>MsaT042913.1

ATGGGTCGTCGCAAAATTGCGATTGCGAGGGTGAGAGACCCTATCATAAGGCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAACTTGCCATCTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTCTCCCTTGGGAATAAGCCTTACTCTTTCGGGCACCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAAGAAGCTCATCTTCTGAAGTTTCGAACAGAGAGGATCTGAATCAACAACTTGAAGATGTGCTAGCTGAACTAAAAGAGGCTGAAAATGAAGCCAGGGCACATGATGAGATCCTAGAAGAATACAAACTGACTGAACTCACTCAACTTGAGGAAATGAAAGATTCATATGGGAAATTTAAGGAAATGGTGAGATCACGTCTTCGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCTCAAGAAAGAAAGGAAAACAACCAATGCTTTAG
Protein sequence

>MsaT042913.1

MGRRKIAIARVRDPIIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSLGNKPYSFGHPSVDDVASKFLEGELNLDDGIRSSSSEVSNREDLNQQLEDVLAELKEAENEARAHDEILEEYKLTELTQLEEMKDSYGKFKEMVRSRLRDLETTESMLLLAEKPVVGTKNKVSRKKGKQPML*