AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG042922

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042922 MtrunA17_Chr8g0357771 94.475 181 10 0 1 181 1 181 2.44e-124 347
MsaG042922 MtrunA17_Chr1g0169761 59.429 175 71 0 1 175 1 175 8.97e-73 217
MsaG042922 MtrunA17_Chr8g0356071 63.314 169 56 2 1 169 1 163 2.37e-69 207
MsaG042922 MtrunA17_Chr1g0180591 56.000 175 77 0 1 175 1 175 1.45e-68 206
MsaG042922 MtrunA17_Chr4g0074101 53.646 192 72 1 1 175 1 192 2.72e-67 204
MsaG042922 MtrunA17_Chr1g0175611 58.333 168 70 0 1 168 1 168 7.05e-67 201
MsaG042922 MtrunA17_Chr1g0175601 57.386 176 74 1 1 175 1 176 1.51e-66 201
MsaG042922 MtrunA17_Chr8g0376821 57.831 166 70 0 1 166 1 166 6.32e-66 199
MsaG042922 MtrunA17_Chr4g0052061 39.881 168 81 5 1 164 1 152 4.74e-29 105
MsaG042922 MtrunA17_Chr3g0119901 43.902 123 59 2 1 117 8 126 3.48e-25 96.7
MsaG042922 MtrunA17_Chr1g0206991 46.535 101 52 1 2 100 9 109 9.20e-25 95.1
MsaG042922 MtrunA17_Chr3g0099411 38.621 145 71 3 2 142 9 139 5.63e-24 94.0
MsaG042922 MtrunA17_Chr3g0085241 39.355 155 82 3 1 143 40 194 5.78e-24 94.4
MsaG042922 MtrunA17_Chr2g0333981 43.269 104 57 1 1 104 11 112 6.45e-24 92.4
MsaG042922 MtrunA17_Chr5g0419601 43.925 107 58 1 1 107 8 112 1.06e-23 93.6
MsaG042922 MtrunA17_Chr8g0379021 40.777 103 59 1 2 104 12 112 1.81e-23 91.7
MsaG042922 MtrunA17_Chr1g0206721 46.535 101 52 1 2 100 9 109 3.47e-23 92.0
MsaG042922 MtrunA17_Chr1g0208581 37.580 157 80 3 2 143 9 162 5.70e-23 91.3
MsaG042922 MtrunA17_Chr3g0099421 57.971 69 29 0 2 70 34 102 8.30e-23 91.7
MsaG042922 MtrunA17_Chr1g0206701 40.361 166 66 7 2 166 9 142 2.54e-22 90.1
MsaG042922 MtrunA17_Chr4g0052081 42.056 107 59 1 1 104 1 107 2.61e-22 88.6
MsaG042922 MtrunA17_Chr2g0292791 57.971 69 29 0 2 70 9 77 4.21e-22 89.4
MsaG042922 MtrunA17_Chr5g0422421 35.897 156 84 3 2 143 9 162 8.42e-22 88.6
MsaG042922 MtrunA17_Chr3g0089141 56.522 69 30 0 2 70 9 77 9.43e-22 88.2
MsaG042922 MtrunA17_Chr8g0355091 56.522 69 30 0 2 70 9 77 1.10e-21 88.2
MsaG042922 MtrunA17_Chr1g0208561 56.522 69 30 0 2 70 9 77 1.10e-21 88.2
MsaG042922 MtrunA17_Chr1g0149391 55.072 69 31 0 2 70 9 77 2.29e-21 87.4
MsaG042922 MtrunA17_Chr2g0325971 37.580 157 80 3 2 143 9 162 3.51e-21 86.7
MsaG042922 MtrunA17_Chr5g0422941 45.918 98 40 1 2 99 9 93 4.11e-21 86.7
MsaG042922 MtrunA17_Chr1g0188671 50.633 79 39 0 2 80 47 125 5.45e-21 87.0
MsaG042922 MtrunA17_Chr1g0187361 56.522 69 30 0 2 70 9 77 8.22e-21 85.9
MsaG042922 MtrunA17_Chr4g0018951 37.600 125 76 2 17 140 27 150 8.52e-21 84.3
MsaG042922 MtrunA17_Chr2g0300421 42.017 119 64 2 2 120 9 122 1.11e-20 84.3
MsaG042922 MtrunA17_Chr2g0317451 34.146 164 92 4 2 151 9 170 1.33e-20 85.5
MsaG042922 MtrunA17_Chr2g0317481 34.146 164 92 4 2 151 9 170 1.46e-20 85.1
MsaG042922 MtrunA17_Chr3g0089151 50.725 69 34 0 2 70 9 77 4.71e-20 81.3
MsaG042922 MtrunA17_Chr2g0300441 53.521 71 33 0 2 72 9 79 8.68e-20 83.2
MsaG042922 MtrunA17_Chr1g0187351 62.963 54 20 0 18 71 8 61 3.40e-19 77.4
MsaG042922 MtrunA17_Chr1g0206691 64.151 53 19 0 18 70 8 60 1.12e-18 80.1
MsaG042922 MtrunA17_Chr7g0238991 58.333 60 25 0 13 72 32 91 1.49e-18 80.1
MsaG042922 MtrunA17_Chr2g0279821 52.174 69 33 0 1 69 1 69 1.61e-18 80.1
MsaG042922 MtrunA17_Chr2g0284911 35.115 131 81 2 1 130 16 143 3.05e-18 79.7
MsaG042922 MtrunA17_Chr5g0427401 46.377 69 37 0 1 69 1 69 8.62e-18 77.8
MsaG042922 MtrunA17_Chr4g0071601 48.101 79 41 0 1 79 11 89 9.44e-18 76.6
MsaG042922 MtrunA17_Chr5g0411691 50.725 69 34 0 1 69 1 69 1.29e-17 77.4
MsaG042922 MtrunA17_Chr8g0351041 35.714 112 70 2 1 112 1 110 1.91e-17 75.5
MsaG042922 MtrunA17_Chr3g0142191 37.778 135 77 3 1 134 1 129 2.50e-17 76.6
MsaG042922 MtrunA17_Chr4g0049541 47.826 69 36 0 1 69 1 69 2.67e-17 76.3
MsaG042922 MtrunA17_Chr4g0020221 50.725 69 34 0 1 69 1 69 2.70e-17 77.0
MsaG042922 MtrunA17_Chr3g0111841 62.500 48 18 0 18 65 12 59 4.07e-17 72.0
MsaG042922 MtrunA17_Chr5g0427921 56.667 60 26 0 1 60 1 60 6.29e-17 71.2
MsaG042922 MtrunA17_Chr5g0420081 46.479 71 35 1 1 71 1 68 6.63e-17 75.5
MsaG042922 MtrunA17_Chr4g0049901 37.857 140 71 3 1 132 27 158 8.31e-17 75.5
MsaG042922 MtrunA17_Chr8g0351051 44.000 75 42 0 1 75 1 75 8.38e-17 75.5
MsaG042922 MtrunA17_Chr1g0204111 42.667 75 43 0 1 75 17 91 8.67e-17 75.5
MsaG042922 MtrunA17_Chr8g0380021 35.714 112 69 1 1 112 17 125 8.67e-17 75.5
MsaG042922 MtrunA17_Chr8g0351031 36.538 104 64 2 1 104 1 102 9.65e-17 74.7
MsaG042922 MtrunA17_Chr7g0246431 46.377 69 37 0 1 69 1 69 1.10e-16 74.3
MsaG042922 MtrunA17_Chr3g0097101 49.275 69 35 0 1 69 16 84 1.71e-16 74.7
MsaG042922 MtrunA17_Chr8g0366231 46.479 71 35 1 1 71 1 68 3.80e-16 73.6
MsaG042922 MtrunA17_Chr3g0077501 44.928 69 38 0 1 69 1 69 4.05e-16 73.2
MsaG042922 MtrunA17_Chr6g0474371 31.655 139 85 4 1 134 1 134 5.99e-16 72.0
MsaG042922 MtrunA17_Chr7g0246381 50.000 68 29 1 1 63 1 68 6.33e-16 68.9
MsaG042922 MtrunA17_Chr4g0061691 46.479 71 35 1 1 71 1 68 6.67e-16 72.8
MsaG042922 MtrunA17_Chr5g0420091 52.632 57 27 0 1 57 1 57 7.27e-16 72.4
MsaG042922 MtrunA17_Chr5g0404951 48.387 62 32 0 1 62 1 62 7.67e-16 72.8
MsaG042922 MtrunA17_Chr7g0220111 50.820 61 30 0 1 61 1 61 8.12e-16 72.8
MsaG042922 MtrunA17_Chr4g0057151 46.377 69 37 0 1 69 1 69 9.51e-16 72.0
MsaG042922 MtrunA17_Chr4g0061671 46.774 62 33 0 1 62 1 62 1.92e-15 70.5
MsaG042922 MtrunA17_Chr7g0220121 41.429 70 40 1 1 69 1 70 2.65e-15 71.6
MsaG042922 MtrunA17_Chr4g0044071 53.448 58 27 0 1 58 1 58 2.79e-15 68.6
MsaG042922 MtrunA17_Chr1g0173161 54.386 57 26 0 1 57 1 57 2.89e-15 67.4
MsaG042922 MtrunA17_Chr3g0122251 52.459 61 29 0 1 61 1 61 3.93e-15 70.9
MsaG042922 MtrunA17_Chr8g0377561 52.632 57 27 0 1 57 1 57 4.68e-15 67.4
MsaG042922 MtrunA17_Chr2g0308251 43.662 71 39 1 1 70 1 71 4.73e-15 67.0
MsaG042922 MtrunA17_Chr6g0455511 50.794 63 30 1 1 62 1 63 5.50e-15 70.5
MsaG042922 MtrunA17_Chr5g0412461 44.615 65 36 0 1 65 1 65 5.61e-15 70.1
MsaG042922 MtrunA17_Chr4g0018421 54.545 55 25 0 1 55 1 55 6.84e-15 69.7
MsaG042922 MtrunA17_Chr5g0412271 44.615 65 36 0 1 65 1 65 7.59e-15 69.7
MsaG042922 MtrunA17_Chr3g0111931 50.943 53 26 0 18 70 6 58 1.48e-14 66.2
MsaG042922 MtrunA17_Chr1g0164791 43.662 71 38 1 1 69 1 71 1.53e-14 68.9
MsaG042922 MtrunA17_Chr3g0134451 35.526 152 77 9 1 151 1 132 4.46e-14 68.9
MsaG042922 MtrunA17_Chr1g0159661 41.935 62 36 0 1 62 1 62 1.38e-13 65.5
MsaG042922 MtrunA17_Chr5g0425191 53.448 58 27 0 1 58 1 58 1.89e-13 63.5
MsaG042922 MtrunA17_Chr3g0111831 56.250 48 21 0 18 65 20 67 1.92e-13 62.8
MsaG042922 MtrunA17_Chr3g0125241 41.935 62 36 0 1 62 26 87 3.24e-13 65.1
MsaG042922 MtrunA17_Chr1g0166611 66.667 42 14 0 17 58 21 62 4.02e-13 63.2
MsaG042922 MtrunA17_Chr3g0093131 34.459 148 58 5 19 140 36 170 1.22e-12 63.2
MsaG042922 MtrunA17_Chr5g0417661 50.000 54 27 0 1 54 56 109 3.36e-12 60.8
MsaG042922 MtrunA17_Chr4g0060841 28.743 167 88 4 1 139 1 164 4.07e-12 63.5
MsaG042922 MtrunA17_Chr8g0345001 48.148 54 28 0 20 73 36 89 2.98e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042922 AT2G34440.1 42.197 173 88 4 1 162 1 172 5.06e-33 116
MsaG042922 AT3G66656.1 40.341 176 88 4 1 160 1 175 1.32e-30 110
MsaG042922 AT2G24840.1 37.805 164 87 4 1 150 62 224 3.02e-30 111
MsaG042922 AT5G60440.1 43.558 163 65 6 2 143 7 163 2.10e-27 105
MsaG042922 AT1G01530.1 46.018 113 58 3 1 112 6 116 8.93e-23 91.7
MsaG042922 AT1G47760.1 55.882 68 30 0 1 68 1 68 3.68e-22 88.6
MsaG042922 AT4G36590.1 57.353 68 29 0 2 69 7 74 1.20e-20 86.3
MsaG042922 AT3G57230.2 47.674 86 38 1 1 86 1 79 1.37e-20 83.6
MsaG042922 AT3G57230.1 47.674 86 38 1 1 86 1 79 3.71e-20 84.7
MsaG042922 AT3G57230.4 47.674 86 38 1 1 86 1 79 3.71e-20 84.7
MsaG042922 AT1G65360.1 53.623 69 32 0 1 69 6 74 8.38e-20 83.6
MsaG042922 AT2G22630.1 53.623 69 32 0 1 69 1 69 2.73e-19 82.0
MsaG042922 AT2G22630.2 53.623 69 32 0 1 69 1 69 2.73e-19 82.0
MsaG042922 AT4G37940.1 53.623 69 32 0 1 69 1 69 4.64e-19 81.6
MsaG042922 AT4G37940.4 53.623 69 32 0 1 69 1 69 6.46e-19 80.9
MsaG042922 AT3G61120.1 44.872 78 43 0 1 78 1 78 9.93e-19 80.9
MsaG042922 AT4G37940.3 53.623 69 32 0 1 69 1 69 1.28e-18 79.3
MsaG042922 AT1G29962.1 48.611 72 37 0 2 73 8 79 1.47e-18 79.3
MsaG042922 AT3G04100.1 36.691 139 65 3 2 135 14 134 3.00e-18 79.0
MsaG042922 AT1G28460.1 47.222 72 38 0 2 73 8 79 5.06e-18 77.8
MsaG042922 AT1G71692.1 42.553 94 50 2 1 93 1 91 1.93e-17 77.0
MsaG042922 AT2G45660.2 33.036 112 72 1 1 112 1 109 2.15e-17 75.5
MsaG042922 AT2G03710.3 35.088 171 89 6 1 158 1 162 2.37e-17 76.3
MsaG042922 AT4G24540.1 35.088 114 70 1 1 110 1 114 5.43e-17 75.9
MsaG042922 AT5G13790.1 40.741 108 53 2 1 106 1 99 5.88e-17 76.6
MsaG042922 AT5G15800.1 34.320 169 93 4 1 158 1 162 5.93e-17 76.3
MsaG042922 AT2G45650.1 46.377 69 37 0 1 69 1 69 6.07e-17 76.3
MsaG042922 AT5G15800.2 34.320 169 93 4 1 158 1 162 6.35e-17 76.3
MsaG042922 AT2G45660.1 45.714 70 38 0 1 70 1 70 6.91e-17 75.5
MsaG042922 AT3G57390.3 47.826 69 36 0 1 69 1 69 8.77e-17 75.5
MsaG042922 AT4G22950.2 47.826 69 36 0 1 69 1 69 9.49e-17 74.3
MsaG042922 AT1G72350.1 53.623 69 30 1 2 70 43 109 9.65e-17 75.1
MsaG042922 AT1G69120.2 49.296 71 33 1 1 71 1 68 1.06e-16 75.5
MsaG042922 AT5G13790.2 40.367 109 55 3 1 106 1 102 1.08e-16 75.9
MsaG042922 AT4G09960.6 33.929 112 71 1 1 112 2 110 1.38e-16 75.1
MsaG042922 AT4G09960.2 33.929 112 71 1 1 112 1 109 1.42e-16 74.7
MsaG042922 AT4G09960.1 33.929 112 71 1 1 112 1 109 1.45e-16 74.7
MsaG042922 AT2G03710.1 35.088 171 89 6 1 158 1 162 1.58e-16 75.1
MsaG042922 AT2G03710.2 35.088 171 89 6 1 158 1 162 1.69e-16 75.1
MsaG042922 AT3G57390.1 47.826 69 36 0 1 69 1 69 1.74e-16 75.1
MsaG042922 AT4G09960.5 33.929 112 71 1 1 112 11 119 1.78e-16 74.7
MsaG042922 AT1G26310.1 30.667 150 102 1 1 150 1 148 1.79e-16 75.1
MsaG042922 AT4G09960.3 33.929 112 71 1 1 112 27 135 2.11e-16 74.7
MsaG042922 AT3G58780.1 31.169 154 101 2 1 154 16 164 2.47e-16 74.7
MsaG042922 AT2G22540.3 49.231 65 33 0 1 65 1 65 2.52e-16 74.3
MsaG042922 AT2G22540.1 49.231 65 33 0 1 65 1 65 2.52e-16 74.3
MsaG042922 AT3G58780.5 31.169 154 101 2 1 154 22 170 2.77e-16 74.7
MsaG042922 AT1G69120.1 49.296 71 33 1 1 71 1 68 2.84e-16 74.7
MsaG042922 AT1G24260.2 35.503 169 92 5 1 157 1 164 3.07e-16 74.3
MsaG042922 AT4G09960.4 33.929 112 71 1 1 112 96 204 3.30e-16 75.1
MsaG042922 AT2G14210.1 54.098 61 28 0 1 61 1 61 3.38e-16 73.9
MsaG042922 AT5G60910.1 46.479 71 35 1 1 71 1 68 3.96e-16 73.9
MsaG042922 AT3G02310.2 34.857 175 96 5 1 164 1 168 4.03e-16 73.2
MsaG042922 AT1G22130.1 50.704 71 34 1 1 70 1 71 4.08e-16 75.1
MsaG042922 AT3G58780.4 34.821 112 70 1 1 112 16 124 4.20e-16 74.3
MsaG042922 AT2G14210.2 54.098 61 28 0 1 61 1 61 4.68e-16 73.6
MsaG042922 AT3G30260.1 54.386 57 26 0 1 57 1 57 5.76e-16 73.6
MsaG042922 AT4G22950.3 47.826 69 36 0 1 69 1 69 6.58e-16 72.8
MsaG042922 AT4G22950.1 47.826 69 36 0 1 69 1 69 6.58e-16 72.8
MsaG042922 AT3G54340.1 50.000 62 31 0 1 62 1 62 1.07e-15 72.8
MsaG042922 AT3G02310.1 34.857 175 96 6 1 164 1 168 1.20e-15 72.8
MsaG042922 AT4G11880.2 35.897 117 50 2 1 116 1 93 1.28e-15 71.2
MsaG042922 AT4G11880.3 35.897 117 50 2 1 116 1 93 1.28e-15 71.2
MsaG042922 AT1G77980.1 48.101 79 36 2 1 78 1 75 1.33e-15 73.6
MsaG042922 AT4G18960.1 34.615 130 81 2 2 130 18 144 1.42e-15 72.8
MsaG042922 AT1G24260.1 35.882 170 89 7 1 157 1 163 1.47e-15 72.4
MsaG042922 AT2G42830.1 46.377 69 37 0 1 69 16 84 1.57e-15 72.4
MsaG042922 AT2G42830.2 46.377 69 37 0 1 69 16 84 1.68e-15 72.4
MsaG042922 AT1G46408.1 50.633 79 33 3 1 73 1 79 1.96e-15 72.4
MsaG042922 AT5G65070.4 35.115 131 79 3 1 127 1 129 2.14e-15 70.1
MsaG042922 AT5G51860.2 43.662 71 40 0 1 71 1 71 2.95e-15 70.9
MsaG042922 AT5G51860.1 43.662 71 40 0 1 71 1 71 3.19e-15 70.9
MsaG042922 AT4G11880.4 35.897 117 50 2 1 116 1 93 4.46e-15 70.9
MsaG042922 AT4G11880.1 35.897 117 50 2 1 116 1 93 4.46e-15 70.9
MsaG042922 AT5G10140.2 52.632 57 27 0 1 57 1 57 5.16e-15 69.3
MsaG042922 AT5G65070.1 35.115 131 79 3 1 127 1 129 6.22e-15 70.1
MsaG042922 AT5G10140.4 52.632 57 27 0 1 57 1 57 6.55e-15 69.7
MsaG042922 AT5G65070.3 43.590 78 41 2 1 76 1 77 7.35e-15 70.5
MsaG042922 AT5G51870.1 42.029 69 40 0 1 69 1 69 7.44e-15 69.7
MsaG042922 AT1G24260.3 41.935 93 49 1 1 93 1 88 8.29e-15 70.5
MsaG042922 AT5G10140.1 52.632 57 27 0 1 57 1 57 8.61e-15 69.3
MsaG042922 AT5G10140.3 51.724 58 28 0 1 58 1 58 1.07e-14 68.9
MsaG042922 AT5G51870.2 42.029 69 40 0 1 69 1 69 1.42e-14 68.6
MsaG042922 AT3G58780.2 39.535 86 39 1 1 73 16 101 1.43e-14 69.7
MsaG042922 AT5G51870.4 42.029 69 40 0 1 69 1 69 1.52e-14 69.3
MsaG042922 AT1G28450.1 43.056 72 41 0 2 73 8 79 1.58e-14 68.6
MsaG042922 AT5G51870.5 42.029 69 40 0 1 69 24 92 2.09e-14 68.6
MsaG042922 AT2G22540.2 50.877 57 28 0 1 57 1 57 2.09e-14 69.3
MsaG042922 AT5G51870.3 42.029 69 40 0 1 69 11 79 2.09e-14 68.9
MsaG042922 AT5G20240.2 47.619 63 33 0 1 63 1 63 2.30e-14 67.4
MsaG042922 AT3G58780.3 50.820 61 30 0 1 61 16 76 2.39e-14 69.7
MsaG042922 AT1G18750.4 28.977 176 84 4 1 138 1 173 2.58e-14 70.1
MsaG042922 AT1G18750.1 28.977 176 84 4 1 138 1 173 2.86e-14 70.1
MsaG042922 AT5G65070.2 42.857 70 39 1 1 69 1 70 3.93e-14 68.6
MsaG042922 AT5G20240.1 47.619 63 33 0 1 63 1 63 4.03e-14 67.8
MsaG042922 AT4G37435.1 28.249 177 94 4 1 150 1 171 4.84e-14 67.4
MsaG042922 AT5G49490.1 41.176 102 45 2 3 100 46 136 6.03e-14 68.6
MsaG042922 AT5G23260.2 34.731 167 91 7 1 157 1 159 7.88e-14 67.8
MsaG042922 AT5G65070.5 48.276 58 30 0 1 58 1 58 8.55e-14 67.0
MsaG042922 AT5G23260.4 56.140 57 25 0 1 57 17 73 8.69e-14 67.8
MsaG042922 AT5G23260.1 56.140 57 25 0 1 57 17 73 9.24e-14 67.8
MsaG042922 AT5G65050.2 52.727 55 26 0 1 55 1 55 1.00e-13 66.2
MsaG042922 AT5G23260.3 36.129 155 85 6 1 149 1 147 1.04e-13 67.4
MsaG042922 AT5G62165.17 39.130 69 42 0 1 69 1 69 1.29e-13 65.5
MsaG042922 AT5G62165.12 39.130 69 42 0 1 69 1 69 1.29e-13 65.5
MsaG042922 AT5G62165.11 39.130 69 42 0 1 69 1 69 1.29e-13 65.5
MsaG042922 AT5G65080.3 44.286 70 38 1 1 69 8 77 1.79e-13 65.9
MsaG042922 AT5G65060.3 54.545 55 25 0 1 55 1 55 1.87e-13 65.9
MsaG042922 AT1G17310.1 57.407 54 21 1 17 70 63 114 2.31e-13 66.2
MsaG042922 AT5G65060.1 54.545 55 25 0 1 55 1 55 2.36e-13 65.5
MsaG042922 AT1G17310.2 57.407 54 21 1 17 70 74 125 2.68e-13 66.2
MsaG042922 AT5G65060.2 54.545 55 25 0 1 55 1 55 2.68e-13 65.5
MsaG042922 AT5G62165.6 39.130 69 42 0 1 69 1 69 2.70e-13 64.7
MsaG042922 AT5G62165.9 39.130 69 42 0 1 69 1 69 2.70e-13 64.7
MsaG042922 AT5G62165.7 39.130 69 42 0 1 69 1 69 2.70e-13 64.7
MsaG042922 AT5G62165.8 39.130 69 42 0 1 69 1 69 2.70e-13 64.7
MsaG042922 AT5G62165.13 39.130 69 42 0 1 69 1 69 2.70e-13 64.7
MsaG042922 AT5G62165.3 39.130 69 42 0 1 69 1 69 2.81e-13 65.9
MsaG042922 AT5G62165.1 39.130 69 42 0 1 69 1 69 2.81e-13 65.9
MsaG042922 AT5G62165.2 39.130 69 42 0 1 69 1 69 2.81e-13 65.9
MsaG042922 AT5G62165.14 30.693 101 59 1 1 90 1 101 2.83e-13 63.5
MsaG042922 AT1G77950.3 40.845 71 41 1 1 70 1 71 3.28e-13 66.2
MsaG042922 AT1G77950.2 40.845 71 41 1 1 70 1 71 3.28e-13 66.2
MsaG042922 AT1G77950.1 40.845 71 41 1 1 70 1 71 3.28e-13 66.2
MsaG042922 AT1G77950.4 40.845 71 41 1 1 70 1 71 3.28e-13 66.2
MsaG042922 AT5G62165.10 39.130 69 42 0 1 69 1 69 3.32e-13 65.1
MsaG042922 AT5G62165.4 39.130 69 42 0 1 69 1 69 3.32e-13 65.1
MsaG042922 AT5G65050.3 52.727 55 26 0 1 55 1 55 3.36e-13 65.1
MsaG042922 AT5G65050.5 52.727 55 26 0 1 55 1 55 3.94e-13 64.7
MsaG042922 AT5G65050.1 52.727 55 26 0 1 55 1 55 4.06e-13 64.7
MsaG042922 AT1G18750.3 43.662 71 38 1 1 69 1 71 5.37e-13 66.6
MsaG042922 AT5G65080.2 48.214 56 29 0 1 56 8 63 9.19e-13 64.3
MsaG042922 AT1G60920.1 43.421 76 38 2 3 73 5 80 1.08e-12 63.9
MsaG042922 AT1G31140.1 30.476 105 68 2 1 100 1 105 2.90e-12 63.2
MsaG042922 AT5G49420.1 45.333 75 37 1 3 73 8 82 3.14e-12 63.9
MsaG042922 AT5G38620.1 45.946 74 36 1 3 72 6 79 4.82e-12 63.5
MsaG042922 AT2G26320.1 45.902 61 33 0 1 61 17 77 9.01e-12 59.3
MsaG042922 AT1G69540.1 41.429 70 40 1 1 69 1 70 1.57e-11 62.0
MsaG042922 AT1G69540.2 41.429 70 40 1 1 69 1 70 2.31e-11 61.6
MsaG042922 AT5G04640.1 41.333 75 40 1 3 73 5 79 2.91e-11 61.2
MsaG042922 AT2G03060.2 33.083 133 59 4 1 106 1 130 3.15e-11 61.2
MsaG042922 AT2G03060.3 33.083 133 59 4 1 106 1 130 3.79e-11 61.2
MsaG042922 AT2G03060.7 33.083 133 59 4 1 106 1 130 3.79e-11 61.2
MsaG042922 AT2G03060.1 33.083 133 59 4 1 106 1 130 3.79e-11 61.2

Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTCTCCTTCAAGAAATT+TGG 0.179978 8:+30626142 None:intergenic
GGAATAAGCCTTACTCTTTC+GGG 0.222535 8:-30626190 MsaT042922.1:CDS
GGGAATAAGCCTTACTCTTT+CGG 0.264231 8:-30626191 MsaT042922.1:CDS
CAGTTGGTTTGTATTCTTCT+AGG 0.270957 8:+30625991 None:intergenic
TGATTCAGATCCTCTCTGTT+TGG 0.338080 8:+30626080 None:intergenic
GCTATTGTTGTGTTCTCCCC+TGG 0.368488 8:-30626212 MsaT042922.1:CDS
AGGATTTGAAAGATTCATAT+CGG 0.405934 8:-30625953 MsaT042922.1:CDS
ACATTCTCTAAGCGTCGAAC+AGG 0.429261 8:-30626284 MsaT042922.1:CDS
CTATTGTTGTGTTCTCCCCT+GGG 0.431123 8:-30626211 MsaT042922.1:CDS
GTTACTTCTTGCAGAGAAAC+CGG 0.436314 8:-30625874 MsaT042922.1:CDS
ATATCGGAAATTGAAGGAAA+TGG 0.440694 8:-30625937 MsaT042922.1:CDS
GTTGCATCCAAATTTCTTGA+AGG 0.449324 8:-30626149 MsaT042922.1:CDS
AATGTAACCTGCCTTATGAT+AGG 0.459002 8:+30626302 None:intergenic
AACAAAGTCGCAAGAAAGAA+AGG 0.460568 8:-30625837 MsaT042922.1:CDS
ATGAACTTGCCATCTTGTGC+GGG 0.468340 8:-30626244 MsaT042922.1:CDS
CTTGGGTGCCCGAAAGAGTA+AGG 0.491836 8:+30626182 None:intergenic
TCAAGTTGAGTGAGTTCAGT+TGG 0.504549 8:+30625975 None:intergenic
AGGAGGCTGAAAATGAAGCT+AGG 0.515324 8:-30626028 MsaT042922.1:CDS
AGCTTCCTATGCCATCATCT+AGG 0.527794 8:+30626117 None:intergenic
AAAGAGTAAGGCTTATTCCC+AGG 0.528202 8:+30626194 None:intergenic
AATGAACTTGCCATCTTGTG+CGG 0.538350 8:-30626245 MsaT042922.1:CDS
AACTGAACTCACTCAACTTG+AGG 0.538837 8:-30625973 MsaT042922.1:CDS
ATGTAACCTGCCTTATGATA+GGG 0.543825 8:+30626303 None:intergenic
GGGTGAGAGACCCTATCATA+AGG 0.546640 8:-30626313 MsaT042922.1:CDS
GATGCAACATCATCAACACT+TGG 0.549337 8:+30626164 None:intergenic
AATTTCTGCCCCGCACAAGA+TGG 0.555860 8:+30626235 None:intergenic
CTTGCAGAGAAACCGGTGGT+TGG 0.563786 8:-30625867 MsaT042922.1:CDS
GGAGAGCTCAACCTAGATGA+TGG 0.566220 8:-30626128 MsaT042922.1:CDS
GGAGGCTGAAAATGAAGCTA+GGG 0.567281 8:-30626027 MsaT042922.1:CDS
GTCGCAAAATTGCGATTGCG+AGG 0.570735 8:-30626334 MsaT042922.1:CDS
GAGAGACCCTATCATAAGGC+AGG 0.574297 8:-30626309 MsaT042922.1:CDS
AAGAGTAAGGCTTATTCCCA+GGG 0.598555 8:+30626195 None:intergenic
AGATGTGCTAGCTCAACTAA+AGG 0.611567 8:-30626048 MsaT042922.1:CDS
AGATTCATATCGGAAATTGA+AGG 0.637344 8:-30625943 MsaT042922.1:CDS
TCGCAAAATTGCGATTGCGA+GGG 0.641127 8:-30626333 MsaT042922.1:CDS
TGTGCTAGCTCAACTAAAGG+AGG 0.641632 8:-30626045 MsaT042922.1:CDS
TCGAACAGGATTATTCAAGA+AGG 0.647981 8:-30626270 MsaT042922.1:CDS
CTCAACCTAGATGATGGCAT+AGG 0.656307 8:-30626122 MsaT042922.1:CDS
ATGCAACATCATCAACACTT+GGG 0.663273 8:+30626165 None:intergenic
TGAACTTGCCATCTTGTGCG+GGG 0.674850 8:-30626243 MsaT042922.1:CDS
TTCTGAAGTTCCAAACAGAG+AGG 0.695196 8:-30626090 MsaT042922.1:CDS
ACTTCTTGCAGAGAAACCGG+TGG 0.709944 8:-30625871 MsaT042922.1:CDS
AGAGTAAGGCTTATTCCCAG+GGG 0.760036 8:+30626196 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 30625818 30626363 30625818 ID=MsaG042922
Chr8 mRNA 30625818 30626363 30625818 ID=MsaT042922.1;Parent=MsaG042922
Chr8 exon 30625818 30626363 30625818 ID=MsaT042922.1.exon1;Parent=MsaT042922.1
Chr8 CDS 30625818 30626363 30625818 ID=cds.MsaT042922.1;Parent=MsaT042922.1
Gene Sequence

>MsaT042922.1

ATGGGTCGTCGCAAAATTGCGATTGCGAGGGTGAGAGACCCTATCATAAGGCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAACTTGCCATCTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCTTTCGGGCACCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAGGAAGCTCATCTTCTGAAGTTCCAAACAGAGAGGATCTGAATCAACAACTTGAAGATGTGCTAGCTCAACTAAAGGAGGCTGAAAATGAAGCTAGGGCACATGATGAGATCCTAGAAGAATACAAACCAACTGAACTCACTCAACTTGAGGATTTGAAAGATTCATATCGGAAATTGAAGGAAATGGTGAGATCACGACTTAGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCGCAAGAAAGAAAGGAAAACAACCAATGCTTTAG
Protein sequence

>MsaT042922.1

MGRRKIAIARVRDPIIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSPGNKPYSFGHPSVDDVASKFLEGELNLDDGIGSSSSEVPNREDLNQQLEDVLAQLKEAENEARAHDEILEEYKPTELTQLEDLKDSYRKLKEMVRSRLSDLETTESMLLLAEKPVVGTKNKVARKKGKQPML*