AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG042927

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042927 MtrunA17_Chr8g0357771 93.923 181 11 0 1 181 1 181 5.55e-124 347
MsaG042927 MtrunA17_Chr1g0169761 56.571 175 76 0 1 175 1 175 1.29e-68 206
MsaG042927 MtrunA17_Chr8g0356071 62.130 169 58 2 1 169 1 163 2.58e-67 202
MsaG042927 MtrunA17_Chr1g0180591 54.857 175 79 0 1 175 1 175 5.80e-66 199
MsaG042927 MtrunA17_Chr1g0175601 55.682 176 77 1 1 175 1 176 2.39e-63 193
MsaG042927 MtrunA17_Chr4g0074101 51.042 192 77 1 1 175 1 192 3.45e-63 193
MsaG042927 MtrunA17_Chr1g0175611 55.952 168 74 0 1 168 1 168 4.15e-63 192
MsaG042927 MtrunA17_Chr8g0376821 55.422 166 74 0 1 166 1 166 3.54e-62 190
MsaG042927 MtrunA17_Chr4g0052061 40.476 168 80 5 1 164 1 152 2.22e-28 103
MsaG042927 MtrunA17_Chr3g0119901 43.089 123 60 2 1 117 8 126 1.63e-24 95.1
MsaG042927 MtrunA17_Chr1g0206991 45.545 101 53 1 2 100 9 109 3.94e-24 93.2
MsaG042927 MtrunA17_Chr3g0085241 38.710 155 83 3 1 143 40 194 7.21e-24 94.4
MsaG042927 MtrunA17_Chr1g0206721 37.013 154 85 4 2 143 9 162 4.91e-23 91.7
MsaG042927 MtrunA17_Chr5g0419601 42.991 107 59 1 1 107 8 112 6.46e-23 91.7
MsaG042927 MtrunA17_Chr2g0333981 43.434 99 54 1 1 99 11 107 8.12e-23 89.7
MsaG042927 MtrunA17_Chr3g0099411 45.545 101 53 1 2 100 9 109 1.28e-22 90.1
MsaG042927 MtrunA17_Chr8g0379021 39.806 103 60 1 2 104 12 112 3.22e-22 88.2
MsaG042927 MtrunA17_Chr3g0099421 56.522 69 30 0 2 70 34 102 5.82e-22 89.4
MsaG042927 MtrunA17_Chr1g0206701 44.554 101 54 1 2 100 9 109 2.31e-21 87.4
MsaG042927 MtrunA17_Chr2g0292791 56.522 69 30 0 2 70 9 77 2.56e-21 87.4
MsaG042927 MtrunA17_Chr1g0208581 39.683 126 71 2 2 125 9 131 3.16e-21 87.0
MsaG042927 MtrunA17_Chr4g0052081 41.121 107 60 1 1 104 1 107 5.42e-21 85.1
MsaG042927 MtrunA17_Chr3g0089141 39.024 123 59 3 2 108 9 131 5.64e-21 86.3
MsaG042927 MtrunA17_Chr8g0355091 55.072 69 31 0 2 70 9 77 6.88e-21 86.3
MsaG042927 MtrunA17_Chr5g0422421 35.256 156 85 3 2 143 9 162 7.72e-21 85.9
MsaG042927 MtrunA17_Chr1g0208561 55.072 69 31 0 2 70 9 77 7.89e-21 85.9
MsaG042927 MtrunA17_Chr3g0089151 52.174 69 33 0 2 70 9 77 9.56e-21 83.2
MsaG042927 MtrunA17_Chr1g0149391 53.623 69 32 0 2 70 9 77 1.49e-20 85.1
MsaG042927 MtrunA17_Chr5g0422941 44.898 98 41 1 2 99 9 93 2.60e-20 84.7
MsaG042927 MtrunA17_Chr1g0188671 49.367 79 40 0 2 80 47 125 3.79e-20 84.7
MsaG042927 MtrunA17_Chr1g0187361 55.072 69 31 0 2 70 9 77 5.19e-20 84.0
MsaG042927 MtrunA17_Chr2g0325971 40.800 125 69 2 2 124 9 130 6.85e-20 83.2
MsaG042927 MtrunA17_Chr2g0300421 41.176 119 65 2 2 120 9 122 1.00e-19 81.6
MsaG042927 MtrunA17_Chr2g0317481 34.395 157 87 4 2 144 9 163 1.21e-19 82.8
MsaG042927 MtrunA17_Chr2g0317451 34.395 157 87 4 2 144 9 163 1.33e-19 82.8
MsaG042927 MtrunA17_Chr2g0300441 52.113 71 34 0 2 72 9 79 4.96e-19 81.3
MsaG042927 MtrunA17_Chr4g0018951 46.575 73 39 0 18 90 28 100 6.23e-19 79.3
MsaG042927 MtrunA17_Chr1g0187351 61.111 54 21 0 18 71 8 61 2.53e-18 75.1
MsaG042927 MtrunA17_Chr1g0206691 62.264 53 20 0 18 70 8 60 7.13e-18 77.8
MsaG042927 MtrunA17_Chr7g0238991 56.667 60 26 0 13 72 32 91 7.97e-18 78.2
MsaG042927 MtrunA17_Chr2g0279821 49.275 69 35 0 1 69 1 69 4.76e-17 75.9
MsaG042927 MtrunA17_Chr4g0071601 46.835 79 42 0 1 79 11 89 1.39e-16 73.6
MsaG042927 MtrunA17_Chr5g0427401 43.478 69 39 0 1 69 1 69 2.82e-16 73.6
MsaG042927 MtrunA17_Chr3g0111841 60.417 48 19 0 18 65 12 59 3.01e-16 69.7
MsaG042927 MtrunA17_Chr2g0284911 33.036 112 72 1 1 112 16 124 3.58e-16 73.9
MsaG042927 MtrunA17_Chr5g0411691 47.826 69 36 0 1 69 1 69 3.59e-16 73.6
MsaG042927 MtrunA17_Chr4g0049541 44.928 69 38 0 1 69 1 69 7.08e-16 72.4
MsaG042927 MtrunA17_Chr8g0351041 33.929 112 72 2 1 112 1 110 7.12e-16 71.2
MsaG042927 MtrunA17_Chr5g0420081 45.070 71 36 1 1 71 1 68 9.49e-16 72.4
MsaG042927 MtrunA17_Chr4g0020221 47.826 69 36 0 1 69 1 69 1.04e-15 72.8
MsaG042927 MtrunA17_Chr4g0049901 36.429 140 73 3 1 132 27 158 1.30e-15 72.0
MsaG042927 MtrunA17_Chr3g0142191 36.792 106 64 1 1 106 1 103 2.06e-15 71.2
MsaG042927 MtrunA17_Chr5g0427921 53.333 60 28 0 1 60 1 60 2.44e-15 67.0
MsaG042927 MtrunA17_Chr8g0351051 41.333 75 44 0 1 75 1 75 2.90e-15 71.2
MsaG042927 MtrunA17_Chr1g0204111 40.000 75 45 0 1 75 17 91 2.99e-15 71.2
MsaG042927 MtrunA17_Chr8g0380021 32.824 131 84 2 1 130 17 144 3.29e-15 71.2
MsaG042927 MtrunA17_Chr7g0246431 43.478 69 39 0 1 69 1 69 3.90e-15 70.5
MsaG042927 MtrunA17_Chr8g0351031 34.615 104 66 2 1 104 1 102 4.15e-15 70.5
MsaG042927 MtrunA17_Chr3g0097101 46.377 69 37 0 1 69 16 84 4.47e-15 70.9
MsaG042927 MtrunA17_Chr8g0366231 45.070 71 36 1 1 71 1 68 5.47e-15 70.5
MsaG042927 MtrunA17_Chr7g0220121 41.429 70 40 1 1 69 1 70 6.62e-15 70.5
MsaG042927 MtrunA17_Chr4g0061691 45.070 71 36 1 1 71 1 68 9.65e-15 69.7
MsaG042927 MtrunA17_Chr3g0077501 42.029 69 40 0 1 69 1 69 1.14e-14 69.3
MsaG042927 MtrunA17_Chr7g0220111 32.768 177 96 6 1 164 1 167 1.30e-14 69.7
MsaG042927 MtrunA17_Chr6g0474371 30.216 139 87 4 1 134 1 134 1.80e-14 68.2
MsaG042927 MtrunA17_Chr5g0404951 45.161 62 34 0 1 62 1 62 2.23e-14 68.6
MsaG042927 MtrunA17_Chr5g0420091 49.123 57 29 0 1 57 1 57 2.27e-14 68.6
MsaG042927 MtrunA17_Chr3g0111831 58.333 48 20 0 18 65 20 67 3.03e-14 65.1
MsaG042927 MtrunA17_Chr7g0246381 47.059 68 31 1 1 63 1 68 3.20e-14 64.3
MsaG042927 MtrunA17_Chr4g0057151 43.478 69 39 0 1 69 1 69 3.28e-14 67.8
MsaG042927 MtrunA17_Chr4g0061671 43.548 62 35 0 1 62 1 62 6.74e-14 66.6
MsaG042927 MtrunA17_Chr6g0455511 30.460 174 104 5 1 164 1 167 7.88e-14 67.4
MsaG042927 MtrunA17_Chr3g0111931 49.057 53 27 0 18 70 6 58 7.97e-14 64.3
MsaG042927 MtrunA17_Chr3g0122251 49.180 61 31 0 1 61 1 61 9.70e-14 67.0
MsaG042927 MtrunA17_Chr4g0044071 50.000 58 29 0 1 58 1 58 1.06e-13 64.3
MsaG042927 MtrunA17_Chr1g0173161 50.877 57 28 0 1 57 1 57 1.41e-13 63.2
MsaG042927 MtrunA17_Chr5g0412461 41.538 65 38 0 1 65 1 65 1.49e-13 66.2
MsaG042927 MtrunA17_Chr5g0412271 41.538 65 38 0 1 65 1 65 1.70e-13 66.2
MsaG042927 MtrunA17_Chr2g0308251 49.123 57 29 0 1 57 1 57 1.75e-13 62.8
MsaG042927 MtrunA17_Chr4g0018421 48.276 58 30 0 1 58 1 58 1.86e-13 65.9
MsaG042927 MtrunA17_Chr8g0377561 49.123 57 29 0 1 57 1 57 2.02e-13 63.2
MsaG042927 MtrunA17_Chr1g0164791 40.845 71 40 1 1 69 1 71 3.80e-13 65.5
MsaG042927 MtrunA17_Chr3g0134451 36.538 104 58 3 1 103 1 97 1.54e-12 64.3
MsaG042927 MtrunA17_Chr1g0159661 40.323 62 37 0 1 62 1 62 1.60e-12 62.8
MsaG042927 MtrunA17_Chr3g0125241 40.323 62 37 0 1 62 26 87 4.73e-12 62.0
MsaG042927 MtrunA17_Chr5g0425191 50.000 58 29 0 1 58 1 58 9.73e-12 58.9
MsaG042927 MtrunA17_Chr1g0166611 63.415 41 15 0 18 58 22 62 1.34e-11 59.3
MsaG042927 MtrunA17_Chr3g0093131 49.091 55 27 1 19 72 36 90 1.51e-11 60.5
MsaG042927 MtrunA17_Chr2g0302091 34.815 135 74 5 24 145 52 185 9.83e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG042927 AT2G34440.1 41.040 173 90 4 1 162 1 172 1.78e-30 109
MsaG042927 AT3G66656.1 38.857 175 92 3 1 160 1 175 1.66e-28 104
MsaG042927 AT2G24840.1 37.267 161 86 4 1 147 62 221 5.85e-28 105
MsaG042927 AT5G60440.1 45.528 123 54 3 2 117 7 123 6.13e-25 98.6
MsaG042927 AT1G01530.1 46.018 113 58 3 1 112 6 116 1.11e-22 91.7
MsaG042927 AT1G65360.1 42.149 121 58 4 1 114 6 121 1.24e-20 85.5
MsaG042927 AT1G47760.1 52.941 68 32 0 1 68 1 68 1.76e-20 84.3
MsaG042927 AT4G36590.1 41.732 127 64 4 2 120 7 131 2.18e-20 85.5
MsaG042927 AT3G57230.2 45.349 86 40 1 1 86 1 79 6.34e-19 79.3
MsaG042927 AT3G57230.1 45.349 86 40 1 1 86 1 79 1.55e-18 80.5
MsaG042927 AT3G57230.4 45.349 86 40 1 1 86 1 79 1.55e-18 80.5
MsaG042927 AT2G22630.1 50.725 69 34 0 1 69 1 69 9.89e-18 77.8
MsaG042927 AT2G22630.2 50.725 69 34 0 1 69 1 69 9.89e-18 77.8
MsaG042927 AT3G04100.1 35.971 139 66 3 2 135 14 134 1.17e-17 77.4
MsaG042927 AT4G37940.1 50.725 69 34 0 1 69 1 69 1.56e-17 77.4
MsaG042927 AT4G37940.4 50.725 69 34 0 1 69 1 69 2.19e-17 76.6
MsaG042927 AT3G61120.1 42.308 78 45 0 1 78 1 78 3.81e-17 76.6
MsaG042927 AT4G37940.3 50.725 69 34 0 1 69 1 69 4.78e-17 75.1
MsaG042927 AT1G29962.1 45.833 72 39 0 2 73 8 79 7.16e-17 74.7
MsaG042927 AT2G03710.3 33.918 171 91 6 1 158 1 162 2.46e-16 73.6
MsaG042927 AT1G28460.1 44.444 72 40 0 2 73 8 79 3.81e-16 72.8
MsaG042927 AT2G45660.2 31.250 112 74 1 1 112 1 109 6.51e-16 71.6
MsaG042927 AT1G71692.1 40.426 94 52 2 1 93 1 91 7.25e-16 72.8
MsaG042927 AT5G15800.1 32.544 169 96 4 1 158 1 162 1.30e-15 72.8
MsaG042927 AT5G15800.2 32.544 169 96 4 1 158 1 162 1.51e-15 72.8
MsaG042927 AT1G69120.2 47.887 71 34 1 1 71 1 68 1.65e-15 72.0
MsaG042927 AT2G03710.1 33.918 171 91 6 1 158 1 162 1.87e-15 72.4
MsaG042927 AT2G03710.2 33.918 171 91 6 1 158 1 162 2.13e-15 72.0
MsaG042927 AT5G13790.1 38.889 108 55 2 1 106 1 99 2.31e-15 72.4
MsaG042927 AT2G45650.1 43.478 69 39 0 1 69 1 69 2.34e-15 72.0
MsaG042927 AT2G45660.1 42.857 70 40 0 1 70 1 70 2.46e-15 71.2
MsaG042927 AT3G57390.3 44.928 69 38 0 1 69 1 69 2.88e-15 71.2
MsaG042927 AT1G72350.1 50.725 69 32 1 2 70 43 109 3.12e-15 71.2
MsaG042927 AT4G22950.2 44.928 69 38 0 1 69 1 69 3.20e-15 70.1
MsaG042927 AT1G69120.1 47.887 71 34 1 1 71 1 68 4.21e-15 71.2
MsaG042927 AT5G13790.2 38.532 109 57 3 1 106 1 102 4.52e-15 71.6
MsaG042927 AT3G57390.1 44.928 69 38 0 1 69 1 69 5.06e-15 71.2
MsaG042927 AT4G24540.1 32.456 114 73 1 1 110 1 114 5.92e-15 70.5
MsaG042927 AT5G60910.1 45.070 71 36 1 1 71 1 68 6.32e-15 70.9
MsaG042927 AT3G30260.1 52.632 57 27 0 1 57 1 57 6.98e-15 70.9
MsaG042927 AT2G22540.3 46.154 65 35 0 1 65 1 65 8.37e-15 70.5
MsaG042927 AT2G22540.1 46.154 65 35 0 1 65 1 65 8.37e-15 70.5
MsaG042927 AT1G26310.1 30.137 146 100 1 1 146 1 144 9.89e-15 70.5
MsaG042927 AT2G14210.1 50.820 61 30 0 1 61 1 61 1.01e-14 70.1
MsaG042927 AT3G58780.4 29.375 160 104 4 1 160 16 166 1.19e-14 70.5
MsaG042927 AT1G77980.1 32.804 189 105 8 1 175 1 181 1.22e-14 70.9
MsaG042927 AT2G14210.2 50.820 61 30 0 1 61 1 61 1.25e-14 69.7
MsaG042927 AT1G24260.2 32.544 169 97 4 1 157 1 164 1.29e-14 70.1
MsaG042927 AT1G22130.1 47.887 71 36 1 1 70 1 71 1.37e-14 70.9
MsaG042927 AT4G09960.2 31.250 112 74 1 1 112 1 109 1.42e-14 69.3
MsaG042927 AT4G09960.1 31.250 112 74 1 1 112 1 109 1.51e-14 69.3
MsaG042927 AT4G09960.6 42.029 69 40 0 1 69 2 70 1.53e-14 69.3
MsaG042927 AT3G58780.1 30.435 161 100 5 1 161 16 164 1.76e-14 69.7
MsaG042927 AT4G09960.5 31.250 112 74 1 1 112 11 119 1.76e-14 69.3
MsaG042927 AT3G58780.5 30.435 161 100 5 1 161 22 170 1.93e-14 69.7
MsaG042927 AT4G22950.3 44.928 69 38 0 1 69 1 69 1.97e-14 68.9
MsaG042927 AT4G22950.1 44.928 69 38 0 1 69 1 69 1.97e-14 68.9
MsaG042927 AT4G09960.3 31.250 112 74 1 1 112 27 135 2.08e-14 69.3
MsaG042927 AT4G09960.4 31.250 112 74 1 1 112 96 204 2.95e-14 69.7
MsaG042927 AT3G54340.1 46.774 62 33 0 1 62 1 62 3.08e-14 68.6
MsaG042927 AT3G02310.2 32.571 175 100 5 1 164 1 168 3.58e-14 67.8
MsaG042927 AT2G42830.1 43.478 69 39 0 1 69 16 84 4.56e-14 68.6
MsaG042927 AT2G42830.2 43.478 69 39 0 1 69 16 84 5.07e-14 68.2
MsaG042927 AT4G11880.2 34.188 117 52 2 1 116 1 93 5.30e-14 67.0
MsaG042927 AT4G11880.3 34.188 117 52 2 1 116 1 93 5.30e-14 67.0
MsaG042927 AT1G24260.1 32.941 170 94 6 1 157 1 163 6.76e-14 68.2
MsaG042927 AT5G65070.4 33.588 131 81 3 1 127 1 129 8.01e-14 65.9
MsaG042927 AT1G46408.1 38.095 126 65 5 1 114 1 125 8.44e-14 67.8
MsaG042927 AT5G51860.2 40.845 71 42 0 1 71 1 71 8.90e-14 67.0
MsaG042927 AT5G51860.1 40.845 71 42 0 1 71 1 71 1.07e-13 67.0
MsaG042927 AT3G02310.1 32.571 175 100 6 1 164 1 168 1.07e-13 67.4
MsaG042927 AT5G51870.2 30.323 155 86 3 1 146 1 142 1.09e-13 66.2
MsaG042927 AT5G51870.5 30.323 155 86 3 1 146 24 165 1.28e-13 66.2
MsaG042927 AT4G11880.4 34.188 117 52 2 1 116 1 93 1.62e-13 66.6
MsaG042927 AT4G11880.1 34.188 117 52 2 1 116 1 93 1.62e-13 66.6
MsaG042927 AT5G10140.2 49.123 57 29 0 1 57 1 57 1.71e-13 65.5
MsaG042927 AT1G24260.3 39.785 93 51 1 1 93 1 88 1.80e-13 66.6
MsaG042927 AT5G10140.4 49.123 57 29 0 1 57 1 57 1.91e-13 65.5
MsaG042927 AT5G51870.1 30.323 155 86 3 1 146 1 142 1.94e-13 66.2
MsaG042927 AT5G65070.1 33.588 131 81 3 1 127 1 129 1.99e-13 65.9
MsaG042927 AT5G51870.4 28.877 187 103 4 1 170 1 174 2.12e-13 66.2
MsaG042927 AT5G49490.1 40.196 102 46 2 3 100 46 136 2.25e-13 67.0
MsaG042927 AT5G51870.3 30.323 155 86 3 1 146 11 152 2.38e-13 66.2
MsaG042927 AT4G18960.1 44.118 68 38 0 2 69 18 85 2.42e-13 66.6
MsaG042927 AT5G65070.3 41.026 78 43 2 1 76 1 77 2.45e-13 66.2
MsaG042927 AT5G10140.1 49.123 57 29 0 1 57 1 57 2.49e-13 65.5
MsaG042927 AT4G37435.1 27.528 178 96 4 1 151 1 172 2.94e-13 65.1
MsaG042927 AT5G10140.3 48.276 58 30 0 1 58 1 58 3.32e-13 65.1
MsaG042927 AT5G20240.2 46.032 63 34 0 1 63 1 63 3.44e-13 64.3
MsaG042927 AT3G58780.2 37.209 86 41 1 1 73 16 101 3.74e-13 65.9
MsaG042927 AT2G22540.2 47.368 57 30 0 1 57 1 57 5.55e-13 65.5
MsaG042927 AT5G20240.1 46.032 63 34 0 1 63 1 63 5.72e-13 64.7
MsaG042927 AT3G58780.3 47.541 61 32 0 1 61 16 76 6.62e-13 65.5
MsaG042927 AT1G28450.1 40.278 72 43 0 2 73 8 79 7.24e-13 64.3
MsaG042927 AT5G65070.2 36.264 91 56 1 1 91 1 89 8.60e-13 64.7
MsaG042927 AT5G65070.5 36.264 91 56 1 1 91 1 89 2.05e-12 63.5
MsaG042927 AT5G23260.4 52.632 57 27 0 1 57 17 73 2.06e-12 64.3
MsaG042927 AT5G23260.2 52.632 57 27 0 1 57 1 57 2.13e-12 63.9
MsaG042927 AT5G23260.1 52.632 57 27 0 1 57 17 73 2.16e-12 63.9
MsaG042927 AT5G23260.3 52.632 57 27 0 1 57 1 57 2.67e-12 63.5
MsaG042927 AT5G65050.2 49.091 55 28 0 1 55 1 55 3.19e-12 62.4
MsaG042927 AT5G65060.2 32.576 132 67 2 1 131 1 111 3.73e-12 62.4
MsaG042927 AT5G62165.17 36.232 69 44 0 1 69 1 69 3.79e-12 61.6
MsaG042927 AT5G62165.12 36.232 69 44 0 1 69 1 69 3.79e-12 61.6
MsaG042927 AT5G62165.11 36.232 69 44 0 1 69 1 69 3.79e-12 61.6
MsaG042927 AT1G17310.1 54.717 53 22 1 18 70 64 114 4.02e-12 62.8
MsaG042927 AT5G65060.3 50.909 55 27 0 1 55 1 55 4.98e-12 62.0
MsaG042927 AT1G17310.2 54.717 53 22 1 18 70 75 125 5.14e-12 62.4
MsaG042927 AT5G65080.3 41.429 70 40 1 1 69 8 77 5.14e-12 62.0
MsaG042927 AT5G65060.1 50.909 55 27 0 1 55 1 55 6.08e-12 62.0
MsaG042927 AT1G77950.3 38.028 71 43 1 1 70 1 71 6.61e-12 62.4
MsaG042927 AT1G77950.2 38.028 71 43 1 1 70 1 71 6.61e-12 62.4
MsaG042927 AT1G77950.1 38.028 71 43 1 1 70 1 71 6.61e-12 62.4
MsaG042927 AT1G77950.4 38.028 71 43 1 1 70 1 71 6.61e-12 62.4
MsaG042927 AT5G62165.3 27.660 188 100 6 1 166 1 174 7.17e-12 62.0
MsaG042927 AT5G62165.1 27.660 188 100 6 1 166 1 174 7.17e-12 62.0
MsaG042927 AT5G62165.2 27.660 188 100 6 1 166 1 174 7.17e-12 62.0
MsaG042927 AT5G62165.6 36.232 69 44 0 1 69 1 69 7.81e-12 60.8
MsaG042927 AT5G62165.9 36.232 69 44 0 1 69 1 69 7.81e-12 60.8
MsaG042927 AT5G62165.7 36.232 69 44 0 1 69 1 69 7.81e-12 60.8
MsaG042927 AT5G62165.8 36.232 69 44 0 1 69 1 69 7.81e-12 60.8
MsaG042927 AT5G62165.13 36.232 69 44 0 1 69 1 69 7.81e-12 60.8
MsaG042927 AT5G65050.3 49.091 55 28 0 1 55 1 55 8.34e-12 61.6
MsaG042927 AT5G62165.10 36.232 69 44 0 1 69 1 69 8.78e-12 61.2
MsaG042927 AT5G62165.4 36.232 69 44 0 1 69 1 69 8.78e-12 61.2
MsaG042927 AT5G62165.14 28.713 101 61 1 1 90 1 101 9.76e-12 59.3
MsaG042927 AT5G65050.5 49.091 55 28 0 1 55 1 55 1.00e-11 61.2
MsaG042927 AT1G18750.4 39.726 73 42 1 1 71 1 73 1.08e-11 62.8
MsaG042927 AT5G65050.1 49.091 55 28 0 1 55 1 55 1.10e-11 60.8
MsaG042927 AT1G18750.1 40.845 71 40 1 1 69 1 71 1.25e-11 62.4
MsaG042927 AT5G49420.1 44.000 75 38 1 3 73 8 82 1.31e-11 62.4
MsaG042927 AT1G18750.3 40.845 71 40 1 1 69 1 71 1.32e-11 62.4
MsaG042927 AT5G38620.1 44.595 74 37 1 3 72 6 79 2.09e-11 61.6
MsaG042927 AT1G31140.1 28.571 105 70 2 1 100 1 105 7.50e-11 59.3

Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTCTCCTTCAAGAAATT+TGG 0.179978 8:+30767498 None:intergenic
GGAATAAGCCTTACTCTTTC+GGG 0.203927 8:-30767546 MsaT042927.1:CDS
AGATTCATATGGGAAATTTA+AGG 0.261798 8:-30767299 MsaT042927.1:CDS
GGGAATAAGCCTTACTCTTT+CGG 0.264231 8:-30767547 MsaT042927.1:CDS
CGGTCGGTTTGTATTCTTCT+AGG 0.267533 8:+30767347 None:intergenic
ATATGGGAAATTTAAGGAAA+TGG 0.366214 8:-30767293 MsaT042927.1:CDS
GCTATTGTTGTGTTCTCCCC+TGG 0.368488 8:-30767568 MsaT042927.1:CDS
GAGGAATTGAAAGATTCATA+TGG 0.396821 8:-30767310 MsaT042927.1:CDS
ATGAATTTGCCATCTTGTGC+GGG 0.409841 8:-30767600 MsaT042927.1:CDS
ACATTCTCTAAGCGTCGAAC+AGG 0.429261 8:-30767640 MsaT042927.1:CDS
CTATTGTTGTGTTCTCCCCT+GGG 0.431123 8:-30767567 MsaT042927.1:CDS
GTTACTTCTTGCAGAGAAAC+CGG 0.436314 8:-30767230 MsaT042927.1:CDS
GTTGCATCCAAATTTCTTGA+AGG 0.449324 8:-30767505 MsaT042927.1:CDS
TGATTCAGATCCTCTCTGTT+CGG 0.453934 8:+30767436 None:intergenic
AATGTAACCTGACTTATGAT+AGG 0.463874 8:+30767658 None:intergenic
AACAAAGTCTCAAGAAAGAA+AGG 0.467261 8:-30767193 MsaT042927.1:CDS
AATGAATTTGCCATCTTGTG+CGG 0.485012 8:-30767601 MsaT042927.1:CDS
AGGAATTGAAAGATTCATAT+GGG 0.485245 8:-30767309 MsaT042927.1:CDS
CTTGGATGCCCGAAAGAGTA+AGG 0.491836 8:+30767538 None:intergenic
GTCGCAAAATTGCGATTGCA+AGG 0.497909 8:-30767690 MsaT042927.1:CDS
GAGAGACCCTATCATAAGTC+AGG 0.500960 8:-30767665 MsaT042927.1:CDS
AGGAGGCTGAAAATGAAGCT+AGG 0.515324 8:-30767384 MsaT042927.1:CDS
AGCTTCCTATGCCATCATCT+AGG 0.527794 8:+30767473 None:intergenic
AAAGAGTAAGGCTTATTCCC+AGG 0.528202 8:+30767550 None:intergenic
TTCCTCAAGTTGAGTGAGAT+CGG 0.528972 8:+30767327 None:intergenic
AATTTCTGCCCCGCACAAGA+TGG 0.555860 8:+30767591 None:intergenic
CTTGCAGAGAAACCGGTGGT+TGG 0.563786 8:-30767223 MsaT042927.1:CDS
GGAGAGCTCAACCTAGATGA+TGG 0.566220 8:-30767484 MsaT042927.1:CDS
GGAGGCTGAAAATGAAGCTA+GGG 0.567281 8:-30767383 MsaT042927.1:CDS
ATGTAACCTGACTTATGATA+GGG 0.576034 8:+30767659 None:intergenic
AGATGTGCTAGCTGAACTAA+AGG 0.580033 8:-30767404 MsaT042927.1:CDS
TCAAGTTGAGTGAGATCGGT+CGG 0.587343 8:+30767331 None:intergenic
GACCGATCTCACTCAACTTG+AGG 0.587596 8:-30767329 MsaT042927.1:CDS
AAGAGTAAGGCTTATTCCCA+GGG 0.598555 8:+30767551 None:intergenic
GATGCAACATCATCAACACT+TGG 0.606572 8:+30767520 None:intergenic
TGAATTTGCCATCTTGTGCG+GGG 0.637467 8:-30767599 MsaT042927.1:CDS
TCGCAAAATTGCGATTGCAA+GGG 0.641127 8:-30767689 MsaT042927.1:CDS
TGTGCTAGCTGAACTAAAGG+AGG 0.641632 8:-30767401 MsaT042927.1:CDS
TCGAACAGGATTATTCAAGA+AGG 0.647981 8:-30767626 MsaT042927.1:CDS
CTCAACCTAGATGATGGCAT+AGG 0.656307 8:-30767478 MsaT042927.1:CDS
ACTTCTTGCAGAGAAACCGG+TGG 0.709944 8:-30767227 MsaT042927.1:CDS
TTCTGAAGTTCCGAACAGAG+AGG 0.730021 8:-30767446 MsaT042927.1:CDS
AGAGTAAGGCTTATTCCCAG+GGG 0.760036 8:+30767552 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 30767174 30767719 30767174 ID=MsaG042927
Chr8 mRNA 30767174 30767719 30767174 ID=MsaT042927.1;Parent=MsaG042927
Chr8 exon 30767174 30767719 30767174 ID=MsaT042927.1.exon1;Parent=MsaT042927.1
Chr8 CDS 30767174 30767719 30767174 ID=cds.MsaT042927.1;Parent=MsaT042927.1
Gene Sequence

>MsaT042927.1

ATGGGTCGTCGCAAAATTGCGATTGCAAGGGTGAGAGACCCTATCATAAGTCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAATTTGCCATCTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCTTTCGGGCATCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAGGAAGCTCATCTTCTGAAGTTCCGAACAGAGAGGATCTGAATCAACAACTTGAAGATGTGCTAGCTGAACTAAAGGAGGCTGAAAATGAAGCTAGGGCACATGATGAGATCCTAGAAGAATACAAACCGACCGATCTCACTCAACTTGAGGAATTGAAAGATTCATATGGGAAATTTAAGGAAATGGTGAGATCACGTCTTCGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCTCAAGAAAGAAAGGAAAACAACCAATGCTTTAG
Protein sequence

>MsaT042927.1

MGRRKIAIARVRDPIISQVTFSKRRTGLFKKANEFAILCGAEIAIVVFSPGNKPYSFGHPSVDDVASKFLEGELNLDDGIGSSSSEVPNREDLNQQLEDVLAELKEAENEARAHDEILEEYKPTDLTQLEELKDSYGKFKEMVRSRLRDLETTESMLLLAEKPVVGTKNKVSRKKGKQPML*