Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG043006 | XP_013445477.2 | 96.359 | 714 | 25 | 1 | 1 | 713 | 1 | 714 | 0.0 | 1422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG043006 | sp|Q56XZ1|SHB_ARATH | 48.189 | 718 | 315 | 12 | 1 | 713 | 1 | 666 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG043006 | tr|A0A396GKW5|A0A396GKW5_MEDTR | 96.359 | 714 | 25 | 1 | 1 | 713 | 1 | 714 | 0.0 | 1422 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG043006 | TF | STAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG043006 | MtrunA17_Chr8g0359041 | 96.359 | 714 | 25 | 1 | 1 | 713 | 1 | 714 | 0.0 | 1422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG043006 | AT1G78540.1 | 48.189 | 718 | 315 | 12 | 1 | 713 | 1 | 666 | 0.0 | 632 |
| MsaG043006 | AT1G78540.2 | 48.392 | 715 | 312 | 12 | 1 | 710 | 1 | 663 | 0.0 | 630 |
| MsaG043006 | AT1G17040.1 | 47.010 | 719 | 295 | 10 | 1 | 713 | 1 | 639 | 0.0 | 619 |
| MsaG043006 | AT1G17040.2 | 46.502 | 729 | 294 | 11 | 1 | 713 | 1 | 649 | 0.0 | 612 |
| MsaG043006 | AT1G78540.3 | 47.453 | 687 | 304 | 12 | 1 | 682 | 1 | 635 | 0.0 | 593 |
| MsaG043006 | AT1G17040.3 | 46.366 | 688 | 283 | 10 | 1 | 682 | 1 | 608 | 0.0 | 583 |
Find 182 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTTTCTCTTTCTGCTTT+TGG | 0.137670 | 8:-33703522 | MsaT043006.1:CDS |
| AAAGGATAATCTCCTAATTT+TGG | 0.151104 | 8:+33698246 | None:intergenic |
| ATCTCTTGGAAATTAATATT+TGG | 0.178295 | 8:+33693028 | None:intergenic |
| TTCTACCCCAGATTGCTTTA+TGG | 0.181537 | 8:+33697981 | None:intergenic |
| TATCAAAGATCATCATTTAA+AGG | 0.184938 | 8:-33700921 | MsaT043006.1:intron |
| TATATTCGGCTTCACATTAA+TGG | 0.190807 | 8:-33701097 | MsaT043006.1:CDS |
| ATGTGAAGCCGAATATAATT+TGG | 0.226222 | 8:+33701103 | None:intergenic |
| TTCCTTCAAATTACTTGAAT+TGG | 0.227549 | 8:+33701027 | None:intergenic |
| ATGAATCCTTCAATCCATTT+AGG | 0.246881 | 8:+33692069 | None:intergenic |
| ATTGGATTCCTTATGTAATA+AGG | 0.269045 | 8:+33701045 | None:intergenic |
| CAAGGAATGGGGTGGTTGTT+TGG | 0.283394 | 8:+33692967 | None:intergenic |
| CTTTCAATGGATCATATATA+CGG | 0.288269 | 8:-33691883 | MsaT043006.1:CDS |
| GGAATTCCATGTCACCTAAA+TGG | 0.294593 | 8:-33692083 | MsaT043006.1:CDS |
| TTCTTCTTCAACCTCAGATA+TGG | 0.297680 | 8:+33700725 | None:intergenic |
| ATATTCGGCTTCACATTAAT+GGG | 0.313116 | 8:-33701096 | MsaT043006.1:CDS |
| ACAATTAGGCAACCGGCATC+TGG | 0.320701 | 8:+33691946 | None:intergenic |
| CACAAAGGAGGATGGGTTCT+AGG | 0.322387 | 8:-33690753 | None:intergenic |
| GATGGTGTTTGGGGCATTGT+TGG | 0.327498 | 8:-33700699 | MsaT043006.1:CDS |
| AGGTTTGTCCAAATTATATT+CGG | 0.332939 | 8:-33701111 | MsaT043006.1:CDS |
| GTGGGGCCAGCTTCTTGAGG+TGG | 0.338393 | 8:+33691969 | None:intergenic |
| TAGAAGATGGAACTAATCTT+TGG | 0.341777 | 8:-33693002 | MsaT043006.1:CDS |
| TGCCTAATTGTTACATATGT+TGG | 0.346266 | 8:-33691934 | MsaT043006.1:CDS |
| TCATGTATGGACTGCTAATC+AGG | 0.353019 | 8:-33697947 | MsaT043006.1:intron |
| CTACTTTCCATGCTATTTGA+AGG | 0.360932 | 8:+33695726 | None:intergenic |
| CTGTTACTTGCATGGGTCCT+TGG | 0.362933 | 8:-33701880 | MsaT043006.1:CDS |
| TCCCAACATATGTAACAATT+AGG | 0.370251 | 8:+33691932 | None:intergenic |
| TGCCAGACAGTATTTGAAAA+TGG | 0.371618 | 8:+33695680 | None:intergenic |
| CACATTAATGGGGAGATTGT+AGG | 0.372402 | 8:-33701085 | MsaT043006.1:CDS |
| AGAAGAAAGTGATGGTGTTT+GGG | 0.375693 | 8:-33700709 | MsaT043006.1:CDS |
| GCCTAATTGTTACATATGTT+GGG | 0.381610 | 8:-33691933 | MsaT043006.1:CDS |
| AACCCCACCATAAAGCAATC+TGG | 0.385813 | 8:-33697988 | MsaT043006.1:CDS |
| CAAGGACCCATGCAAGTAAC+AGG | 0.387372 | 8:+33701881 | None:intergenic |
| AAGAAGAAAGTGATGGTGTT+TGG | 0.389600 | 8:-33700710 | MsaT043006.1:CDS |
| GGGACTGGGTAAATGCTATC+TGG | 0.392153 | 8:-33692104 | MsaT043006.1:CDS |
| TCCATCTTCTATCAATCTCT+TGG | 0.394660 | 8:+33693014 | None:intergenic |
| CAAATACTGTCTGGCAGGCT+TGG | 0.395074 | 8:-33695673 | MsaT043006.1:CDS |
| GAACCTGAGCTGTCCCGTTT+GGG | 0.400255 | 8:-33690973 | MsaT043006.1:CDS |
| TCCAAGAGATTGATAGAAGA+TGG | 0.402990 | 8:-33693015 | MsaT043006.1:CDS |
| TAGAGAACTTTGAGAAGTTA+TGG | 0.403203 | 8:-33692161 | MsaT043006.1:CDS |
| TAATTTGAAGGAAATACATT+TGG | 0.404039 | 8:-33701017 | MsaT043006.1:CDS |
| TAAACTGAATGATTTATGTT+TGG | 0.405855 | 8:-33703563 | MsaT043006.1:CDS |
| AGAACCTGAGCTGTCCCGTT+TGG | 0.407753 | 8:-33690974 | MsaT043006.1:CDS |
| AACGAGAAAAGGAGCACTTT+CGG | 0.410857 | 8:+33701961 | None:intergenic |
| TGGGGCCAGCTTCTTGAGGT+GGG | 0.411262 | 8:+33691970 | None:intergenic |
| ATTTGGACAGCCTGTTGATA+TGG | 0.412767 | 8:-33700137 | MsaT043006.1:CDS |
| GAGATTCTAAGAAGCATTGC+GGG | 0.414323 | 8:-33692204 | MsaT043006.1:CDS |
| TCGCCACAAACTACTTTCAA+TGG | 0.414819 | 8:-33691896 | MsaT043006.1:CDS |
| AGATTGCTTTATGGTGGGGT+TGG | 0.415607 | 8:+33697990 | None:intergenic |
| CCCTACCACCATTCTTCATC+AGG | 0.420283 | 8:-33703473 | MsaT043006.1:intron |
| ACTGTCTTCCTTATTACATA+AGG | 0.420661 | 8:-33701053 | MsaT043006.1:CDS |
| ACCTCATTCTCCATATCAAC+AGG | 0.425279 | 8:+33700127 | None:intergenic |
| AATGTAATAATTCTCATGTA+TGG | 0.426139 | 8:-33697960 | MsaT043006.1:CDS |
| TCATGAAGATTGCTTCTTGT+GGG | 0.429431 | 8:-33692912 | MsaT043006.1:CDS |
| CAAACAACCACCCCATTCCT+TGG | 0.429564 | 8:-33692966 | MsaT043006.1:CDS |
| GTCCGATTCGATGCATCTCC+AGG | 0.430659 | 8:-33698206 | MsaT043006.1:CDS |
| GTCAAGATCTCTCTCTCATC+AGG | 0.431837 | 8:-33692890 | MsaT043006.1:intron |
| ATATAAAATTAGGTTGAGAA+TGG | 0.431848 | 8:-33695843 | MsaT043006.1:intron |
| ATACATTTGGCCAACCTTTG+TGG | 0.433609 | 8:-33701004 | MsaT043006.1:CDS |
| TTCCATCATAGCTAGACAAA+AGG | 0.435470 | 8:+33699935 | None:intergenic |
| ACCCCAGATTGCTTTATGGT+GGG | 0.435953 | 8:+33697985 | None:intergenic |
| ACTGCGCTCTTCCAAGGAAT+GGG | 0.437559 | 8:+33692955 | None:intergenic |
| CAAGATATCTGTATCAGTTA+AGG | 0.438887 | 8:-33698013 | MsaT043006.1:CDS |
| AGCAATTGATGATGTGTCAT+TGG | 0.443673 | 8:-33698103 | MsaT043006.1:CDS |
| GGTGTTTGGGGCATTGTTGG+TGG | 0.445924 | 8:-33700696 | MsaT043006.1:CDS |
| AGACAAAGAAATTTCAGAGT+TGG | 0.446109 | 8:-33695607 | MsaT043006.1:CDS |
| TGAAGCTTCTGCCTCCTCCT+TGG | 0.447893 | 8:+33692044 | None:intergenic |
| TATAAAATTAGGTTGAGAAT+GGG | 0.447911 | 8:-33695842 | MsaT043006.1:intron |
| CTGTAGCGTGTGTAATATCC+AGG | 0.453605 | 8:-33692125 | MsaT043006.1:CDS |
| GAGGCAGAAGCTTCACTTCA+AGG | 0.453781 | 8:-33692036 | MsaT043006.1:CDS |
| GGGGCCAGCTTCTTGAGGTG+GGG | 0.454316 | 8:+33691971 | None:intergenic |
| CCCCAGATTGCTTTATGGTG+GGG | 0.459838 | 8:+33697986 | None:intergenic |
| TCATTGGAAAGTATGAATTC+TGG | 0.460754 | 8:-33698087 | MsaT043006.1:CDS |
| CTGGATATTACACACGCTAC+AGG | 0.462387 | 8:+33692126 | None:intergenic |
| ATCCAATTCAAGTAATTTGA+AGG | 0.462536 | 8:-33701029 | MsaT043006.1:CDS |
| TGGAGACAGTAGTGGTGTGC+AGG | 0.464205 | 8:-33700984 | MsaT043006.1:CDS |
| CACTGCGCTCTTCCAAGGAA+TGG | 0.469423 | 8:+33692954 | None:intergenic |
| TTGGAAGAGCGCAGTGTATG+AGG | 0.470136 | 8:-33692947 | MsaT043006.1:CDS |
| ATATGTAACAATTAGGCAAC+CGG | 0.470781 | 8:+33691939 | None:intergenic |
| TCCATCATAGCTAGACAAAA+GGG | 0.472581 | 8:+33699936 | None:intergenic |
| AAGTAGAAGATATCAAATAT+CGG | 0.473248 | 8:-33695709 | MsaT043006.1:CDS |
| TAGGCAACCGGCATCTGGGT+GGG | 0.474931 | 8:+33691951 | None:intergenic |
| AGCTGGCCCCACCCAGATGC+CGG | 0.477204 | 8:-33691958 | MsaT043006.1:CDS |
| ATGTCACCTAAATGGATTGA+AGG | 0.477650 | 8:-33692075 | MsaT043006.1:CDS |
| ACCCCACCATAAAGCAATCT+GGG | 0.481499 | 8:-33697987 | MsaT043006.1:CDS |
| TATATCTTACCTTCCCAAAC+GGG | 0.481733 | 8:+33690960 | None:intergenic |
| TACCCCAGATTGCTTTATGG+TGG | 0.481887 | 8:+33697984 | None:intergenic |
| AAACCTCTTCATCAGTGGGT+TGG | 0.490109 | 8:+33698050 | None:intergenic |
| GCCTGTTGATATGGAGAATG+AGG | 0.491700 | 8:-33700128 | MsaT043006.1:intron |
| TTCACTTGTGTATGCTGACA+CGG | 0.492848 | 8:-33699995 | MsaT043006.1:CDS |
| TCTTCATGTAAGTAAAGAAC+TGG | 0.493153 | 8:+33701908 | None:intergenic |
| TTCTTTGTCTGAAGCAGAGA+TGG | 0.494049 | 8:+33695620 | None:intergenic |
| GATCCATTGAAAGTAGTTTG+TGG | 0.495131 | 8:+33691893 | None:intergenic |
| ATATATCTTACCTTCCCAAA+CGG | 0.496846 | 8:+33690959 | None:intergenic |
| AGGCAACCGGCATCTGGGTG+GGG | 0.497592 | 8:+33691952 | None:intergenic |
| CGTGTGTAATATCCAGGGAC+TGG | 0.499294 | 8:-33692119 | MsaT043006.1:CDS |
| TTCAATCCATTTAGGTGACA+TGG | 0.504658 | 8:+33692077 | None:intergenic |
| GAAGCTTCACTTCAAGGTCC+AGG | 0.505329 | 8:-33692030 | MsaT043006.1:CDS |
| TTCATGAAGATTGCTTCTTG+TGG | 0.506672 | 8:-33692913 | MsaT043006.1:CDS |
| TGGCACAGGCATCTTGTCGC+AGG | 0.510165 | 8:-33700192 | MsaT043006.1:intron |
| TATAGATTCACAAAGGAGGA+TGG | 0.510328 | 8:-33690761 | MsaT043006.1:intron |
| CTTCCCAAACGGGACAGCTC+AGG | 0.511754 | 8:+33690970 | None:intergenic |
| TTATTGTTGATAACGAGAAA+AGG | 0.512110 | 8:+33701950 | None:intergenic |
| CTGAATCATCAGAGAGTACA+GGG | 0.512336 | 8:-33695761 | MsaT043006.1:CDS |
| TGGGTGGGGCCAGCTTCTTG+AGG | 0.513111 | 8:+33691966 | None:intergenic |
| GAAGCTCCTGTTACTTGCAT+GGG | 0.514189 | 8:-33701887 | MsaT043006.1:CDS |
| TCATCAGTTGTATTCTCGAC+TGG | 0.514337 | 8:+33699967 | None:intergenic |
| GTCGTGCATCATTTAAGCTC+AGG | 0.517134 | 8:-33699870 | MsaT043006.1:CDS |
| GGTTCCCCACCTCAAGAAGC+TGG | 0.518481 | 8:-33691975 | MsaT043006.1:CDS |
| AGATGGAACTAATCTTTGGC+TGG | 0.521756 | 8:-33692998 | MsaT043006.1:CDS |
| ATTTAAGCTCAGGATATCTC+AGG | 0.523956 | 8:-33699860 | MsaT043006.1:intron |
| CAAAATTATCCACGCTGGTG+TGG | 0.527759 | 8:-33698173 | MsaT043006.1:CDS |
| CCACGTTCTTGAAATCCTCC+TGG | 0.528277 | 8:+33692012 | None:intergenic |
| AAACCAACCCACTGATGAAG+AGG | 0.534477 | 8:-33698053 | MsaT043006.1:CDS |
| TCATACACTGCGCTCTTCCA+AGG | 0.536339 | 8:+33692949 | None:intergenic |
| TTTCATCCAAGTGTGATAGC+AGG | 0.537892 | 8:-33698293 | MsaT043006.1:CDS |
| TCTGAATCATCAGAGAGTAC+AGG | 0.539016 | 8:-33695762 | MsaT043006.1:CDS |
| CAATTAGGCAACCGGCATCT+GGG | 0.539070 | 8:+33691947 | None:intergenic |
| GCCAGTAGCATATCTTGCAA+TGG | 0.540447 | 8:+33690997 | None:intergenic |
| ACCATTGCAAGATATGCTAC+TGG | 0.540687 | 8:-33690998 | MsaT043006.1:CDS |
| CTCCTGGAGATGCATCGAAT+CGG | 0.542203 | 8:+33698204 | None:intergenic |
| ACTTTGAGAAGTTATGGTGC+TGG | 0.543644 | 8:-33692155 | MsaT043006.1:CDS |
| CGGGTGTTTGTCTGAAGGAA+AGG | 0.544681 | 8:+33698228 | None:intergenic |
| AGAAGCTCCTGTTACTTGCA+TGG | 0.548585 | 8:-33701888 | MsaT043006.1:CDS |
| GATAGCATTTACCCAGTCCC+TGG | 0.552763 | 8:+33692107 | None:intergenic |
| CTTCTTCAAAGTTAAGAGAT+CGG | 0.555555 | 8:+33695799 | None:intergenic |
| TCACTTGTGTATGCTGACAC+GGG | 0.556831 | 8:-33699994 | MsaT043006.1:CDS |
| TTTCAGGATGTTCCCACCAC+AGG | 0.559339 | 8:-33695566 | MsaT043006.1:intron |
| CTCTAAACCTCTTCATCAGT+GGG | 0.562428 | 8:+33698046 | None:intergenic |
| GGTTACGTGTACAATTATGA+AGG | 0.562441 | 8:-33700962 | MsaT043006.1:CDS |
| GAACAACCTGCTATCACACT+TGG | 0.566917 | 8:+33698287 | None:intergenic |
| AAATTCACCTTCAAATAGCA+TGG | 0.570364 | 8:-33695733 | MsaT043006.1:CDS |
| ACTACTGTCTCCACAAAGGT+TGG | 0.570979 | 8:+33700994 | None:intergenic |
| ATAGATTCACAAAGGAGGAT+GGG | 0.571702 | 8:-33690760 | MsaT043006.1:intron |
| AGGATTCATCACCAAGGAGG+AGG | 0.573700 | 8:-33692055 | MsaT043006.1:CDS |
| TTTCAATGGATCATATATAC+GGG | 0.575038 | 8:-33691882 | MsaT043006.1:intron |
| GTACTCTCTGATGATTCAGA+TGG | 0.580613 | 8:+33695765 | None:intergenic |
| CGCTCTTCCAAGGAATGGGG+TGG | 0.581585 | 8:+33692959 | None:intergenic |
| GTGTGTAATATCCAGGGACT+GGG | 0.582085 | 8:-33692118 | MsaT043006.1:CDS |
| TCATCTATTGATAACTTCAG+AGG | 0.582464 | 8:+33700753 | None:intergenic |
| TTAGGCAACCGGCATCTGGG+TGG | 0.584004 | 8:+33691950 | None:intergenic |
| ATGATTGACCTGATGAAGAA+TGG | 0.584281 | 8:+33703465 | None:intergenic |
| TGGAGATGCATCGAATCGGA+CGG | 0.584719 | 8:+33698208 | None:intergenic |
| TCTATTGATAACTTCAGAGG+AGG | 0.585690 | 8:+33700756 | None:intergenic |
| CTGATGAAGAGGTTTAGAGT+TGG | 0.586232 | 8:-33698042 | MsaT043006.1:CDS |
| GGAGATGCATCGAATCGGAC+GGG | 0.587647 | 8:+33698209 | None:intergenic |
| GATGAAATGAGAAGAAACGA+AGG | 0.596652 | 8:-33703592 | MsaT043006.1:CDS |
| CTGAGCTGTCCCGTTTGGGA+AGG | 0.597914 | 8:-33690969 | MsaT043006.1:intron |
| CACTTGTGTATGCTGACACG+GGG | 0.600002 | 8:-33699993 | MsaT043006.1:CDS |
| TTGGAACACAAAATCTGATG+AGG | 0.600332 | 8:+33698265 | None:intergenic |
| TCGGACGGGTGTTTGTCTGA+AGG | 0.602563 | 8:+33698223 | None:intergenic |
| TGGATATTACACACGCTACA+GGG | 0.607476 | 8:+33692127 | None:intergenic |
| CAATGCTTCTTAGAATCTCA+AGG | 0.610813 | 8:+33692208 | None:intergenic |
| CTATTGATAACTTCAGAGGA+GGG | 0.614350 | 8:+33700757 | None:intergenic |
| ACATGTGGAACTTCTGTCCA+AGG | 0.615922 | 8:+33701863 | None:intergenic |
| TATTCGGCTTCACATTAATG+GGG | 0.619662 | 8:-33701095 | MsaT043006.1:CDS |
| ACTCTAAACCTCTTCATCAG+TGG | 0.621417 | 8:+33698045 | None:intergenic |
| ATGGGTTCATGTTGGATGTG+AGG | 0.626398 | 8:-33701810 | MsaT043006.1:intron |
| TCAAAATCAACAGTAACATG+TGG | 0.626757 | 8:+33701848 | None:intergenic |
| CCTGATGAAGAATGGTGGTA+GGG | 0.632209 | 8:+33703473 | None:intergenic |
| TGAGATTCTAAGAAGCATTG+CGG | 0.636449 | 8:-33692205 | MsaT043006.1:CDS |
| AGATGAATCATCCATATCTG+AGG | 0.644094 | 8:-33700736 | MsaT043006.1:CDS |
| AACCTTTGTGGAGACAGTAG+TGG | 0.645377 | 8:-33700992 | MsaT043006.1:CDS |
| CCAGGAGGATTTCAAGAACG+TGG | 0.650281 | 8:-33692012 | MsaT043006.1:CDS |
| GGATTATAGATTCACAAAGG+AGG | 0.651553 | 8:-33690765 | MsaT043006.1:intron |
| ACCTGATGAAGAATGGTGGT+AGG | 0.654856 | 8:+33703472 | None:intergenic |
| CTGCGCTCTTCCAAGGAATG+GGG | 0.656673 | 8:+33692956 | None:intergenic |
| ATGAAATGAGAAGAAACGAA+GGG | 0.660758 | 8:-33703591 | MsaT043006.1:CDS |
| CACCACTACTGTCTCCACAA+AGG | 0.671743 | 8:+33700990 | None:intergenic |
| TTGGGATTATAGATTCACAA+AGG | 0.671769 | 8:-33690768 | MsaT043006.1:intron |
| GGAGACAGTAGTGGTGTGCA+GGG | 0.672818 | 8:-33700983 | MsaT043006.1:CDS |
| GAAGAAAGTGATGGTGTTTG+GGG | 0.673785 | 8:-33700708 | MsaT043006.1:CDS |
| CCATCATAGCTAGACAAAAG+GGG | 0.681924 | 8:+33699937 | None:intergenic |
| CCCCACCATAAAGCAATCTG+GGG | 0.685299 | 8:-33697986 | MsaT043006.1:CDS |
| GAGGTTGAAGAAGAAAGTGA+TGG | 0.685547 | 8:-33700717 | MsaT043006.1:CDS |
| TGTAGCGTGTGTAATATCCA+GGG | 0.688612 | 8:-33692124 | MsaT043006.1:CDS |
| TAACACAAAATTATCCACGC+TGG | 0.694520 | 8:-33698178 | MsaT043006.1:CDS |
| GCTTCACTTCAAGGTCCAGG+AGG | 0.697928 | 8:-33692027 | MsaT043006.1:CDS |
| ACTTGTGTATGCTGACACGG+GGG | 0.701144 | 8:-33699992 | MsaT043006.1:CDS |
| TGAAGGATTCATCACCAAGG+AGG | 0.729057 | 8:-33692058 | MsaT043006.1:CDS |
| ATTGACCTGATGAAGAATGG+TGG | 0.747228 | 8:+33703468 | None:intergenic |
| GATTGAAGGATTCATCACCA+AGG | 0.751713 | 8:-33692061 | MsaT043006.1:CDS |
| TGAATCATCAGAGAGTACAG+GGG | 0.779447 | 8:-33695760 | MsaT043006.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 33690754 | 33703623 | 33690754 | ID=MsaG043006 |
| Chr8 | mRNA | 33690754 | 33703623 | 33690754 | ID=MsaT043006.1;Parent=MsaG043006 |
| Chr8 | exon | 33690754 | 33690778 | 33690754 | ID=MsaT043006.1.exon12;Parent=MsaT043006.1 |
| Chr8 | CDS | 33690754 | 33690778 | 33690754 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Chr8 | exon | 33690970 | 33691047 | 33690970 | ID=MsaT043006.1.exon11;Parent=MsaT043006.1 |
| Chr8 | CDS | 33690970 | 33691047 | 33690970 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Chr8 | exon | 33691883 | 33692232 | 33691883 | ID=MsaT043006.1.exon10;Parent=MsaT043006.1 |
| Chr8 | CDS | 33691883 | 33692232 | 33691883 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Chr8 | exon | 33692891 | 33693053 | 33692891 | ID=MsaT043006.1.exon9;Parent=MsaT043006.1 |
| Chr8 | CDS | 33692891 | 33693053 | 33692891 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Chr8 | exon | 33695567 | 33695853 | 33695567 | ID=MsaT043006.1.exon8;Parent=MsaT043006.1 |
| Chr8 | CDS | 33695567 | 33695853 | 33695567 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Chr8 | exon | 33697948 | 33698316 | 33697948 | ID=MsaT043006.1.exon7;Parent=MsaT043006.1 |
| Chr8 | CDS | 33697948 | 33698316 | 33697948 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Chr8 | exon | 33699861 | 33700025 | 33699861 | ID=MsaT043006.1.exon6;Parent=MsaT043006.1 |
| Chr8 | CDS | 33699861 | 33700025 | 33699861 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Chr8 | exon | 33700129 | 33700206 | 33700129 | ID=MsaT043006.1.exon5;Parent=MsaT043006.1 |
| Chr8 | CDS | 33700129 | 33700206 | 33700129 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Chr8 | exon | 33700692 | 33700781 | 33700692 | ID=MsaT043006.1.exon4;Parent=MsaT043006.1 |
| Chr8 | CDS | 33700692 | 33700781 | 33700692 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Chr8 | exon | 33700922 | 33701131 | 33700922 | ID=MsaT043006.1.exon3;Parent=MsaT043006.1 |
| Chr8 | CDS | 33700922 | 33701131 | 33700922 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Chr8 | exon | 33701811 | 33701999 | 33701811 | ID=MsaT043006.1.exon2;Parent=MsaT043006.1 |
| Chr8 | CDS | 33701811 | 33701999 | 33701811 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Chr8 | exon | 33703474 | 33703623 | 33703474 | ID=MsaT043006.1.exon1;Parent=MsaT043006.1 |
| Chr8 | CDS | 33703474 | 33703623 | 33703474 | ID=cds.MsaT043006.1;Parent=MsaT043006.1 |
| Gene Sequence |
| Protein sequence |
