AlfalfaGEDB | MsaG043008

M. sativa ssp. caerulea / MsaG043008

KEGG: -
GO: GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043008	XP_013445445.1	98.103	580	11	0	1	580	1	580	0.0	1186

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043008	sp\|Q9LUC3\|MPK19_ARATH	71.184	583	129	9	3	555	2	575	0.0	796

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043008	tr\|A0A072TQJ8\|A0A072TQJ8_MEDTR	98.103	580	11	0	1	580	1	580	0.0	1186

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043008	MtrunA17_Chr8g0359091	98.103	580	11	0	1	580	1	580	0.0	1186
MsaG043008	MtrunA17_Chr2g0314321	69.059	627	142	7	3	580	2	625	0.0	834
MsaG043008	MtrunA17_Chr3g0096631	64.506	617	173	8	3	580	2	611	0.0	772
MsaG043008	MtrunA17_Chr5g0443351	71.283	491	128	5	5	494	1	479	0.0	712
MsaG043008	MtrunA17_Chr2g0287271	66.731	517	148	7	6	508	5	511	0.0	706
MsaG043008	MtrunA17_Chr4g0065851	68.930	486	141	2	6	481	5	490	0.0	701
MsaG043008	MtrunA17_Chr8g0392811	70.000	450	133	2	9	457	100	548	0.0	684
MsaG043008	MtrunA17_Chr6g0482681	74.818	413	98	2	9	418	72	481	0.0	655
MsaG043008	MtrunA17_Chr4g0030231	52.280	329	150	3	32	360	46	367	2.57e-120	360
MsaG043008	MtrunA17_Chr8g0387401	50.296	338	159	4	29	365	55	384	7.47e-118	354

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG043008	AT3G14720.1	71.184	583	129	9	3	555	2	575	796
MsaG043008	AT1G53510.1	67.458	590	155	7	3	555	2	591	773
MsaG043008	AT2G42880.1	65.278	576	165	7	3	549	2	571	748
MsaG043008	AT3G14720.2	85.986	421	55	2	3	420	2	421	741
MsaG043008	AT3G14720.3	85.986	421	55	2	3	420	2	421	741
MsaG043008	AT2G42880.2	80.796	427	81	1	3	428	2	428	727
MsaG043008	AT5G19010.1	62.976	551	185	7	9	542	8	556	694
MsaG043008	AT1G73670.1	75.921	407	98	0	15	421	79	485	681
MsaG043008	AT3G18040.4	75.862	406	98	0	13	418	119	524	655
MsaG043008	AT3G18040.3	75.862	406	98	0	13	418	119	524	654

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Find 132 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTGGAAATCAAATA+AGG	0.274470	8:+33722368	MsaT043008.1:CDS
AAACTCAAAGTTTGCGATTT+TGG	0.080119	8:+33719621	MsaT043008.1:CDS
AAATTCTGGAAATCAAATAA+GGG	0.439887	8:+33722369	MsaT043008.1:CDS
AACCCAGCAGTCCAACTTAC+AGG	0.346236	8:+33723716	MsaT043008.1:CDS
AACCTCACGAAGGATTCTAA+CGG	0.666001	8:-33719213	None:intergenic
AATAACCCATACCGTCGGCG+AGG	0.683175	8:+33723762	MsaT043008.1:CDS
AATGCAAGGAAGTACTTGAC+TGG	0.516613	8:+33721087	MsaT043008.1:CDS
AATGGTAGAAGATACATCTA+AGG	0.355469	8:+33722327	MsaT043008.1:CDS
AATTCTGGAAATCAAATAAG+GGG	0.628698	8:+33722370	MsaT043008.1:CDS
AATTGGAATTTGAGTTTGAG+AGG	0.490863	8:+33721737	MsaT043008.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	33718366	33723932	33718366	ID=MsaG043008
Chr8	mRNA	33718366	33723932	33718366	ID=MsaT043008.1;Parent=MsaG043008
Chr8	exon	33718366	33718392	33718366	ID=MsaT043008.1.exon1;Parent=MsaT043008.1
Chr8	CDS	33718366	33718392	33718366	ID=cds.MsaT043008.1;Parent=MsaT043008.1
Chr8	exon	33719041	33719449	33719041	ID=MsaT043008.1.exon2;Parent=MsaT043008.1
Chr8	CDS	33719041	33719449	33719041	ID=cds.MsaT043008.1;Parent=MsaT043008.1
Chr8	exon	33719565	33719692	33719565	ID=MsaT043008.1.exon3;Parent=MsaT043008.1
Chr8	CDS	33719565	33719692	33719565	ID=cds.MsaT043008.1;Parent=MsaT043008.1
Chr8	exon	33719796	33719855	33719796	ID=MsaT043008.1.exon4;Parent=MsaT043008.1
Chr8	CDS	33719796	33719855	33719796	ID=cds.MsaT043008.1;Parent=MsaT043008.1
Chr8	exon	33720796	33720945	33720796	ID=MsaT043008.1.exon5;Parent=MsaT043008.1
Chr8	CDS	33720796	33720945	33720796	ID=cds.MsaT043008.1;Parent=MsaT043008.1
Chr8	exon	33721075	33721230	33721075	ID=MsaT043008.1.exon6;Parent=MsaT043008.1
Chr8	CDS	33721075	33721230	33721075	ID=cds.MsaT043008.1;Parent=MsaT043008.1
Chr8	exon	33721667	33721878	33721667	ID=MsaT043008.1.exon7;Parent=MsaT043008.1
Chr8	CDS	33721667	33721878	33721667	ID=cds.MsaT043008.1;Parent=MsaT043008.1
Chr8	exon	33722005	33722106	33722005	ID=MsaT043008.1.exon8;Parent=MsaT043008.1
Chr8	CDS	33722005	33722106	33722005	ID=cds.MsaT043008.1;Parent=MsaT043008.1
Chr8	exon	33722258	33722418	33722258	ID=MsaT043008.1.exon9;Parent=MsaT043008.1
Chr8	CDS	33722258	33722418	33722258	ID=cds.MsaT043008.1;Parent=MsaT043008.1
Chr8	exon	33723595	33723932	33723595	ID=MsaT043008.1.exon10;Parent=MsaT043008.1
Chr8	CDS	33723595	33723932	33723595	ID=cds.MsaT043008.1;Parent=MsaT043008.1

Gene Sequence

>MsaT043008.1

ATGACGCAGAAAATTCAGCAGCTCAAGGACTCAAAAGAGTTGGAGTTTTTCACTGAGTATGGGGAAGCTAACAGATACAAGATTATTGAGATTATTGGAAAGGGTAGCTATGGAGTTGTTTGTGCAGCAATTGACACCCACACTGGCGAAAAGGTTGCAATTAAGAAGATTCAAGATGCCTTTGAACATATTTCTGATGCCGTTAGAATCCTTCGTGAGGTTAAGTTGCTGAGGCTTTTAAGACACCCTGATATTGTTGATATTAAGAGGATCATGTTGCCGCCGTCAAAGAGAGAGTTTAAAGATATTTATGTGGTCTTTGAGCTTATGGAGTCTGATCTCCATCAAGTCATTAAAGCCAATGATGACTTGACCCGCGAACACCATCAATTTTTTCTTTATCAGATGCTACGTGCGTTGAAGTATATGCATTCGGCTAATGTGTACCACAGAGATCTTAAACCCAAGAATATATTGGCAAATGCAAACTGTAAACTCAAAGTTTGCGATTTTGGACTTGCAAGAGTTGCATTTAATGATGCCCCAACATCAATATTTTGGACGGATTATGTTGCTACAAGATGGTATAGAGCCCCAGAGCTTTGTGGATCATTCGCTTCCAAGTACACACCAGCAATTGATTTATGGAGCATTGGATGCATTTTTGCTGAGGTGCTATTGGGAAAGCCTCTGTTTCCTGGTAAAAGTGTCGTGCATCAGTTAGATTTGATTACCGACCTTCTTGGGACACCATCACTTGAAACTATTGCAGGAGTTAGAAATGATAATGCAAGGAAGTACTTGACTGGAATGCGGAAGAAACTTCCTGTGCCATTTGAACAGAAATTTCCAGATGCTGATCCATTGGCACTTCGCCTTTTGCAAAGGCTTCTAGCATTTGATCCAAAGAATCGGCCAACTGCAGAAGAGGCACTGGCTGATCCTTACTTCAAGGGCTTGGCAAAAGTTGAGAGAGAACCTTCGTGTAAGCCAATCTCAAAATTGGAATTTGAGTTTGAGAGGAGACGGCTAACAAAGGATGATGTTAGAGAACTAGTATATCGGGAAATACTAGAATATCATCCTCAACTGCTCAAAGATTACATGAATGGAACTGAAGGCGCCAATTTCCTCTATCCGAGTGCAATTGATCAATTGAGGAAGCAATTTGCTTATCTTGAGGAAAATGATGGAAAAAGTGGGCCAGTGCTTGCTCCTGAAAGAAAGCATGTCTCCCTTCCAAGGTCCACTGTTCACTCTAGTGCAGTGCTTCCAAGTAACCAGTCAACTTTTACTTTGTGTGAGAACAAGAAAATGGTAGAAGATACATCTAAGGGTTTGCGAGCAGCCGCAGAAAATTCTGGAAATCAAATAAGGGGTGTACAGCCTCCACCACGGGTGCCAGCTAAGCCAGGGAGAGTAGTAGGCCCAGTTCTACACTATGAAGATGCAAGAATCGCATACTCTTCTATTGACCCAAGGATGGTTTACCAAAATACTACTCAAGCAGTCTCGAGTCACTTTAGAACCCAGCAGTCCAACTTACAGGACACACCAACCTCTGATTTGAACAATAACCCATACCGTCGGCGAGGCAATAACAATAACCTAAATGATCATGTAACTATTGATACAAAACTGCTGCATGCACAGTCTCATATTGGTGTAGTCGGTGCTGCAGCAGTAGCTGTTGCCACTCACAGTCACAGGTATTCAAGGGGCATTCAGTACAGTTTGTCCTAG

Protein sequence

>MsaT043008.1

MTQKIQQLKDSKELEFFTEYGEANRYKIIEIIGKGSYGVVCAAIDTHTGEKVAIKKIQDAFEHISDAVRILREVKLLRLLRHPDIVDIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHSANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDAPTSIFWTDYVATRWYRAPELCGSFASKYTPAIDLWSIGCIFAEVLLGKPLFPGKSVVHQLDLITDLLGTPSLETIAGVRNDNARKYLTGMRKKLPVPFEQKFPDADPLALRLLQRLLAFDPKNRPTAEEALADPYFKGLAKVEREPSCKPISKLEFEFERRRLTKDDVRELVYREILEYHPQLLKDYMNGTEGANFLYPSAIDQLRKQFAYLEENDGKSGPVLAPERKHVSLPRSTVHSSAVLPSNQSTFTLCENKKMVEDTSKGLRAAAENSGNQIRGVQPPPRVPAKPGRVVGPVLHYEDARIAYSSIDPRMVYQNTTQAVSSHFRTQQSNLQDTPTSDLNNNPYRRRGNNNNLNDHVTIDTKLLHAQSHIGVVGAAAVAVATHSHRYSRGIQYSLS*