AlfalfaGEDB | MsaG043026

M. sativa ssp. caerulea / MsaG043026

KEGG: -
GO: GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043026	AET02893.1	76.792	293	34	5	67	343	32	306	7.95e-147	427

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043026	sp\|C0LGG7\|Y1534_ARATH	57.534	292	107	4	67	342	593	883	4.73e-107	337

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043026	tr\|G7LB28\|G7LB28_MEDTR	76.792	293	34	5	67	343	32	306	3.79e-147	427

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043026	MtrunA17_Chr8g0359651	69.178	292	70	4	73	344	641	932	2.26e-129	394
MsaG043026	MtrunA17_Chr8g0359641	69.178	292	70	4	73	344	641	932	4.32e-129	393
MsaG043026	MtrunA17_Chr2g0314881	59.810	316	100	5	32	334	180	481	2.08e-121	361
MsaG043026	MtrunA17_Chr2g0315061	63.504	274	85	3	74	334	18	289	4.76e-119	348
MsaG043026	MtrunA17_Chr2g0314821	58.204	323	114	4	29	334	598	916	9.46e-119	366
MsaG043026	MtrunA17_Chr2g0314841	62.081	298	88	4	50	334	628	913	3.13e-118	365
MsaG043026	MtrunA17_Chr2g0314911	65.056	269	81	2	79	334	646	914	3.26e-114	354
MsaG043026	MtrunA17_Chr2g0314901	63.158	285	88	3	63	334	641	921	1.05e-113	353
MsaG043026	MtrunA17_Chr2g0315081	64.312	269	83	2	79	334	638	906	2.71e-112	349
MsaG043026	MtrunA17_Chr2g0314991	64.312	269	83	2	79	334	195	463	1.12e-108	347

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043026	AT1G53420.1	57.534	292	107	4	67	342	593	883	4.81e-108	337
MsaG043026	AT3G14840.2	58.364	269	99	2	74	329	651	919	2.73e-106	334
MsaG043026	AT1G53440.1	59.857	279	98	3	74	338	646	924	1.13e-102	325
MsaG043026	AT1G53430.2	59.498	279	99	3	74	338	607	885	3.08e-102	323
MsaG043026	AT1G53430.1	59.498	279	99	3	74	338	648	926	5.36e-102	323
MsaG043026	AT1G07650.4	55.254	295	114	5	67	344	434	727	4.21e-100	313
MsaG043026	AT1G07650.3	55.254	295	114	5	67	344	621	914	2.98e-98	312
MsaG043026	AT1G07650.1	55.254	295	114	5	67	344	647	940	4.15e-98	312
MsaG043026	AT1G07650.2	55.254	295	114	5	67	344	653	946	4.36e-98	312
MsaG043026	AT1G29730.1	46.847	333	142	6	18	316	543	874	9.71e-88	283

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Find 77 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATCTTGCTTCACAA+AGG	0.636080	8:-34034977	MsaT043026.1:CDS
AAACCAAAATCCGATATCTT+AGG	0.218850	8:+34034303	None:intergenic
AACCAAAATCCGATATCTTA+GGG	0.455273	8:+34034304	None:intergenic
AACCCTAAGATATCGGATTT+TGG	0.200878	8:-34034306	MsaT043026.1:CDS
AACCCTTCTCTCTTCTTGAT+TGG	0.319601	8:-34033914	MsaT043026.1:CDS
AACCTTGCTCATGCACTATT+TGG	0.199654	8:-34034582	MsaT043026.1:intron
AAGACCGTGAAATTTGTCAC+GGG	0.577692	8:+34038370	None:intergenic
AAGATTGGTGAAGGAGAATT+TGG	0.310079	8:-34034897	MsaT043026.1:CDS
ACACATTGATGAAAATGAGT+TGG	0.517167	8:-34040143	None:intergenic
ACCCAATCAAGAAGAGAGAA+GGG	0.596840	8:+34033912	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	34033634	34040151	34033634	ID=MsaG043026
Chr8	mRNA	34033634	34040151	34033634	ID=MsaT043026.1;Parent=MsaG043026
Chr8	exon	34033634	34033777	34033634	ID=MsaT043026.1.exon9;Parent=MsaT043026.1
Chr8	CDS	34033634	34033777	34033634	ID=cds.MsaT043026.1;Parent=MsaT043026.1
Chr8	exon	34033914	34034052	34033914	ID=MsaT043026.1.exon8;Parent=MsaT043026.1
Chr8	CDS	34033914	34034052	34033914	ID=cds.MsaT043026.1;Parent=MsaT043026.1
Chr8	exon	34034246	34034483	34034246	ID=MsaT043026.1.exon7;Parent=MsaT043026.1
Chr8	CDS	34034246	34034483	34034246	ID=cds.MsaT043026.1;Parent=MsaT043026.1
Chr8	exon	34034583	34034667	34034583	ID=MsaT043026.1.exon6;Parent=MsaT043026.1
Chr8	CDS	34034583	34034667	34034583	ID=cds.MsaT043026.1;Parent=MsaT043026.1
Chr8	exon	34034699	34034797	34034699	ID=MsaT043026.1.exon5;Parent=MsaT043026.1
Chr8	CDS	34034699	34034797	34034699	ID=cds.MsaT043026.1;Parent=MsaT043026.1
Chr8	exon	34034884	34035002	34034884	ID=MsaT043026.1.exon4;Parent=MsaT043026.1
Chr8	CDS	34034884	34035002	34034884	ID=cds.MsaT043026.1;Parent=MsaT043026.1
Chr8	exon	34038375	34038417	34038375	ID=MsaT043026.1.exon3;Parent=MsaT043026.1
Chr8	CDS	34038375	34038417	34038375	ID=cds.MsaT043026.1;Parent=MsaT043026.1
Chr8	exon	34039877	34039903	34039877	ID=MsaT043026.1.exon2;Parent=MsaT043026.1
Chr8	CDS	34039877	34039903	34039877	ID=cds.MsaT043026.1;Parent=MsaT043026.1
Chr8	exon	34040008	34040151	34040008	ID=MsaT043026.1.exon1;Parent=MsaT043026.1
Chr8	CDS	34040008	34040151	34040008	ID=cds.MsaT043026.1;Parent=MsaT043026.1

Gene Sequence

>MsaT043026.1

ATGAGTTGGAGATTTGAGATTTACCTATATCAATTTGCTTCAGTCAATGGTGAAAAATTTGAGGAGCATGATCTGAGAAATGGAGATAAGAGAGAGGTTCGATTGAAATGGGACGTTGTAGTGACAACTCGGATTAAGGTGGCGGTTTGTAGAGAAGATGAAGGGAAAATGGCTCAACCTCAGACTGCACCTCTCCCCCGTGACAAATTTCACGGGCAAAAGGATCTTGCTTCACAAAGGAATGTATTCACCTTACAACAAATCAAAGCAGCAACGAACAACTTCGATGAATCTCTCAAGATTGGTGAAGGAGAATTTGGTCCAGTTTACAAGGGTGTTCTATTAGACGGCACAATAGTAGCAATTAAACAGTTATCTTCTGAATCAAAGCAAGGAACTCGTGAATTTACTAATGAGATAGGAATTATATATCTCCATGGCTTATGCGAAGAAGATGATCAGATGTTGTTGATATATGAATACATGGAAAACAACAACCTTGCTCATGCACTATTTGACCAAGAAAATTGTCAATTGGGACTGGACTGGAAAACTAGGAAGAGAATTTGCATTGGTATTGCTAGAGGTTTATCTTACCTCCATGAAGAGTCAAAAATAAAGATCATTCATACGGACATCAAAGCCGCTAATGTGTTGCTAGATAAATATCTCAACCCTAAGATATCGGATTTTGGTTTTGCTAGGGTCACCGAAGAAGGCAAAATCCACATTACCAGTAGAATAACCGGCACATATGGATACATGGCTCCTGAGTATGATATGCATGGTTACTTGACAGACAAGGCAGATGTTTTTAGTTTTGGAATTGTTGTATTGGAAATTGTTAGTGGAGCCAGCAGTACTCAAGAGGAACCCTTCTCTCTTCTTGATTGGGTTCGCCACTTGAAGGAAGAAGATAGTCTGATGGAGCTCGTTGATCCGAGGTTGGGTAAAGACTTCAAGAAAGAGGAAGTAATGTTGCTCTTTTATGCACCAATTCTACTCCATCCCTCAGGCCATCCATGTCTTCAGTTGTAA

Protein sequence

>MsaT043026.1

MSWRFEIYLYQFASVNGEKFEEHDLRNGDKREVRLKWDVVVTTRIKVAVCREDEGKMAQPQTAPLPRDKFHGQKDLASQRNVFTLQQIKAATNNFDESLKIGEGEFGPVYKGVLLDGTIVAIKQLSSESKQGTREFTNEIGIIYLHGLCEEDDQMLLIYEYMENNNLAHALFDQENCQLGLDWKTRKRICIGIARGLSYLHEESKIKIIHTDIKAANVLLDKYLNPKISDFGFARVTEEGKIHITSRITGTYGYMAPEYDMHGYLTDKADVFSFGIVVLEIVSGASSTQEEPFSLLDWVRHLKEEDSLMELVDPRLGKDFKKEEVMLLFYAPILLHPSGHPCLQL*