AlfalfaGEDB | MsaG043190

M. sativa ssp. caerulea / MsaG043190

KEGG: K15601 K21989
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02373.25

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043190	KEH19646.1	78.607	201	36	3	1	200	1	195	1.01e-97	298

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043190	sp\|Q9SSE9\|JMJ25_ARATH	48.889	180	89	2	4	182	509	686	1.50e-48	176
MsaG043190	sp\|Q9SSE9\|JMJ25_ARATH	56.000	100	39	1	174	268	774	873	8.48e-26	110

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043190	tr\|A0A072TR00\|A0A072TR00_MEDTR	78.607	201	36	3	1	200	1	195	4.83e-98	298

TFs/TRs:

Gene ID	Type	Classification
MsaG043190	TR	Jumonji

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000093	MsaG043190	0.838232	5.973537e-57	2.206578e-54
MsaG000464	MsaG043190	0.804383	3.742081e-49	5.592641e-47
MsaG000578	MsaG043190	0.817444	5.719786e-52	1.176904e-49
MsaG000514	MsaG043190	0.829549	8.683012e-55	2.480689e-52
MsaG000689	MsaG043190	0.815867	1.285726e-51	2.540602e-49
MsaG001001	MsaG043190	0.830566	4.918189e-55	1.446512e-52
MsaG001188	MsaG043190	0.845314	8.230311e-59	3.810235e-56
MsaG001496	MsaG043190	0.810678	1.750980e-50	3.039961e-48
MsaG003289	MsaG043190	0.804462	3.603164e-49	5.394765e-47
MsaG003427	MsaG043190	0.843629	2.325413e-58	1.018880e-55
MsaG003649	MsaG043190	0.803975	4.544905e-49	6.728573e-47
MsaG003929	MsaG043190	0.806576	1.304159e-49	2.051742e-47
MsaG004293	MsaG043190	0.859734	6.611694e-63	5.088949e-60
MsaG004446	MsaG043190	0.846419	4.136751e-59	1.986551e-56
MsaG004479	MsaG043190	0.835399	3.131155e-56	1.061377e-53
MsaG005346	MsaG043190	0.809434	3.236196e-50	5.451613e-48
MsaG005960	MsaG043190	0.812552	6.882733e-51	1.251338e-48
MsaG006133	MsaG043190	0.854623	2.100338e-61	1.338717e-58
MsaG006625	MsaG043190	0.830643	4.711191e-55	1.388631e-52
MsaG007000	MsaG043190	0.845947	5.555701e-59	2.626484e-56
MsaG007544	MsaG043190	0.818550	3.226034e-52	6.829701e-50
MsaG008036	MsaG043190	0.805153	2.588252e-49	3.937962e-47
MsaG008525	MsaG043190	0.819752	1.723316e-52	3.765135e-50
MsaG009059	MsaG043190	0.803914	4.679603e-49	6.918067e-47
MsaG009068	MsaG043190	0.809766	2.748020e-50	4.666448e-48
MsaG009265	MsaG043190	0.811272	1.303865e-50	2.296912e-48
MsaG009301	MsaG043190	0.811087	1.429586e-50	2.506979e-48
MsaG009725	MsaG043190	0.822173	4.804699e-53	1.119429e-50
MsaG009703	MsaG043190	0.891619	7.456587e-74	2.391651e-70
MsaG010483	MsaG043190	0.829730	7.847865e-55	2.253728e-52
MsaG011011	MsaG043190	0.851005	2.244233e-60	1.259190e-57
MsaG011237	MsaG043190	0.814852	2.157343e-51	4.154771e-49
MsaG011320	MsaG043190	0.805697	1.992804e-49	3.070654e-47
MsaG011366	MsaG043190	0.804205	4.073041e-49	6.062328e-47
MsaG011889	MsaG043190	0.814817	2.195476e-51	4.224555e-49
MsaG011947	MsaG043190	0.826903	3.744302e-54	9.929310e-52
MsaG011971	MsaG043190	0.868988	8.779647e-66	9.752929e-63
MsaG041916	MsaG043190	0.810871	1.591291e-50	2.775769e-48
MsaG041931	MsaG043190	0.830691	4.584571e-55	1.353236e-52
MsaG042557	MsaG043190	0.803556	5.547677e-49	8.133869e-47
MsaG042994	MsaG043190	0.813048	5.367155e-51	9.879193e-49
MsaG043190	MsaG043225	0.844530	1.336796e-58	6.031193e-56
MsaG043190	MsaG044017	0.834592	4.987598e-56	1.650462e-53
MsaG043190	MsaG044227	0.825788	6.881720e-54	1.769203e-51
MsaG043190	MsaG044788	0.805420	2.276913e-49	3.485727e-47
MsaG043190	MsaG044934	0.809960	2.497116e-50	4.260255e-48
MsaG043190	MsaG045105	0.859880	5.979291e-63	4.627419e-60
MsaG043190	MsaG045109	0.803882	4.751313e-49	7.018843e-47
MsaG043190	MsaG045412	0.809217	3.600745e-50	6.033668e-48
MsaG043190	MsaG045654	0.820488	1.171332e-52	2.609687e-50
MsaG043190	MsaG045799	0.807121	1.001942e-49	1.596582e-47
MsaG043190	MsaG045974	0.831343	3.177867e-55	9.558147e-53
MsaG043190	MsaG046126	0.826061	5.932636e-54	1.536847e-51
MsaG043190	MsaG046530	0.875572	5.751046e-68	8.482933e-65
MsaG043190	MsaG046861	0.847873	1.659606e-59	8.369351e-57
MsaG043190	MsaG046978	0.825364	8.664151e-54	2.201408e-51
MsaG043190	MsaG047067	0.820731	1.030858e-52	2.311384e-50
MsaG043190	MsaG000676	0.803666	5.265370e-49	7.739534e-47
MsaG043190	MsaG001460	0.818116	4.041674e-52	8.461156e-50
MsaG043190	MsaG003009	0.841806	7.055803e-58	2.915998e-55
MsaG043190	MsaG001106	0.807376	8.850481e-50	1.418879e-47
MsaG043190	MsaG009125	0.812147	8.428955e-51	1.517040e-48
MsaG043190	MsaG010579	0.810899	1.569259e-50	2.739253e-48
MsaG043190	MsaG008311	0.837752	7.928158e-57	2.885582e-54
MsaG043190	MsaG009665	0.801685	1.343721e-48	1.887329e-46
MsaG043190	MsaG016780	0.809688	2.855575e-50	4.839934e-48
MsaG043190	MsaG015244	0.811962	9.246149e-51	1.656645e-48
MsaG043190	MsaG013404	0.800001	2.954338e-48	3.994690e-46
MsaG043190	MsaG014177	0.859803	6.304293e-63	4.864966e-60
MsaG043190	MsaG018513	0.811021	1.477250e-50	2.586354e-48
MsaG043190	MsaG027316	0.809239	3.562536e-50	5.972718e-48
MsaG043190	MsaG027479	0.839859	2.273322e-57	8.835703e-55
MsaG043190	MsaG027534	0.800809	2.026764e-48	2.790809e-46
MsaG043190	MsaG028732	0.802293	1.009089e-48	1.437115e-46
MsaG043190	MsaG033233	0.804475	3.581240e-49	5.363558e-47
MsaG043190	MsaG033253	0.841394	9.053360e-58	3.692878e-55
MsaG043190	MsaG032021	0.816318	1.020701e-51	2.040228e-49
MsaG043190	MsaG031311	0.814771	2.247357e-51	4.319400e-49
MsaG043190	MsaG032134	0.841148	1.049585e-57	4.248153e-55
MsaG043190	MsaG036784	0.846668	3.539844e-59	1.714181e-56
MsaG043190	MsaG039604	0.808338	5.538580e-50	9.086662e-48
MsaG043190	MsaG040777	0.812428	7.323437e-51	1.327355e-48
MsaG043190	MsaG036671	0.867040	3.689727e-65	3.785093e-62
MsaG043190	MsaG042698	0.827085	3.389981e-54	9.035344e-52
MsaG043190	MsaG042299	0.809990	2.461176e-50	4.201937e-48
MsaG014575	MsaG043190	0.816676	8.495404e-52	1.713670e-49
MsaG015184	MsaG043190	0.804361	3.781086e-49	5.648166e-47
MsaG016077	MsaG043190	0.803646	5.316795e-49	7.811302e-47
MsaG016293	MsaG043190	0.881929	3.391129e-70	6.699160e-67
MsaG016302	MsaG043190	0.826111	5.771491e-54	1.497204e-51
MsaG016571	MsaG043190	0.805855	1.847627e-49	2.857445e-47
MsaG016980	MsaG043190	0.815920	1.251754e-51	2.476793e-49
MsaG017589	MsaG043190	0.819214	2.282669e-52	4.917610e-50
MsaG017656	MsaG043190	0.853397	4.722006e-61	2.881266e-58
MsaG017737	MsaG043190	0.813425	4.440199e-51	8.250390e-49
MsaG017740	MsaG043190	0.823896	1.913526e-53	4.670762e-51
MsaG017773	MsaG043190	0.850652	2.819854e-60	1.563021e-57
MsaG017972	MsaG043190	0.807497	8.343487e-50	1.341503e-47
MsaG018290	MsaG043190	0.823859	1.951992e-53	4.759884e-51
MsaG018496	MsaG043190	0.815287	1.728534e-51	3.365768e-49
MsaG018593	MsaG043190	0.806194	1.568446e-49	2.445316e-47
MsaG018961	MsaG043190	0.810700	1.732239e-50	3.009006e-48
MsaG019221	MsaG043190	0.816753	8.167321e-52	1.650825e-49
MsaG019296	MsaG043190	0.814435	2.664955e-51	5.078940e-49
MsaG019615	MsaG043190	0.802785	7.998547e-49	1.151988e-46
MsaG019862	MsaG043190	0.809060	3.889523e-50	6.493325e-48
MsaG020030	MsaG043190	0.820484	1.173695e-52	2.614704e-50
MsaG021429	MsaG043190	0.832379	1.768590e-55	5.482532e-53
MsaG021665	MsaG043190	0.863651	4.251485e-64	3.807128e-61
MsaG022021	MsaG043190	0.810924	1.550474e-50	2.708052e-48
MsaG022065	MsaG043190	0.835326	3.265981e-56	1.104687e-53
MsaG022079	MsaG043190	0.822372	4.322698e-53	1.012552e-50
MsaG022403	MsaG043190	0.817510	5.528394e-52	1.139440e-49
MsaG025944	MsaG043190	0.810285	2.127392e-50	3.658268e-48
MsaG026812	MsaG043190	0.808337	5.542038e-50	9.092018e-48
MsaG026841	MsaG043190	0.837710	8.127241e-57	2.954174e-54
MsaG026844	MsaG043190	0.853314	4.986925e-61	3.033783e-58
MsaG027416	MsaG043190	0.809019	3.968330e-50	6.618300e-48
MsaG028246	MsaG043190	0.849664	5.316041e-60	2.848510e-57
MsaG029245	MsaG043190	0.829904	7.122619e-55	2.055696e-52
MsaG029655	MsaG043190	0.832722	1.454871e-55	4.555565e-53
MsaG029661	MsaG043190	0.801372	1.556537e-48	2.170754e-46
MsaG029987	MsaG043190	0.802877	7.657841e-49	1.105258e-46
MsaG030359	MsaG043190	0.843150	3.117255e-58	1.344942e-55
MsaG031573	MsaG043190	0.802418	9.511922e-49	1.358566e-46
MsaG032422	MsaG043190	0.817827	4.693386e-52	9.752706e-50
MsaG033298	MsaG043190	0.850910	2.387489e-60	1.335232e-57
MsaG034837	MsaG043190	0.805187	2.547341e-49	3.878748e-47
MsaG035190	MsaG043190	0.832423	1.724266e-55	5.352157e-53
MsaG035465	MsaG043190	0.827437	2.793432e-54	7.519229e-52
MsaG035529	MsaG043190	0.808388	5.405348e-50	8.878658e-48
MsaG036337	MsaG043190	0.808950	4.104908e-50	6.834758e-48
MsaG039196	MsaG043190	0.808632	4.797220e-50	7.926396e-48
MsaG039932	MsaG043190	0.836082	2.105812e-56	7.286220e-54
MsaG040425	MsaG043190	0.801280	1.625182e-48	2.261719e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043190	MtrunA17_Chr8g0361381	84.492	187	22	3	1	186	32	212	1.31e-101	295
MsaG043190	MtrunA17_Chr2g0289121	82.234	197	30	2	1	196	430	622	1.92e-101	314
MsaG043190	MtrunA17_Chr2g0289121	81.000	100	14	1	175	269	703	802	1.40e-45	164
MsaG043190	MtrunA17_Chr2g0289031	78.142	183	39	1	1	182	10	192	6.48e-94	282
MsaG043190	MtrunA17_Chr2g0289031	80.208	96	14	1	179	269	281	376	3.90e-45	157
MsaG043190	MtrunA17_Chr4g0075261	61.140	193	73	2	10	201	446	637	6.99e-76	247
MsaG043190	MtrunA17_Chr4g0075261	70.000	100	25	1	175	269	748	847	5.44e-38	142
MsaG043190	MtrunA17_Chr2g0289091	83.333	126	20	1	72	196	20	145	7.11e-67	214
MsaG043190	MtrunA17_Chr2g0289091	77.778	81	13	1	176	251	340	420	1.20e-34	129
MsaG043190	MtrunA17_Chr7g0275771	52.222	180	85	1	4	182	457	636	8.00e-60	204
MsaG043190	MtrunA17_Chr7g0275771	66.316	95	27	1	180	269	813	907	2.30e-32	125
MsaG043190	MtrunA17_Chr1g0147021	57.895	171	68	3	13	182	1163	1330	1.21e-59	204
MsaG043190	MtrunA17_Chr1g0147021	66.667	93	26	1	182	269	1586	1678	4.59e-31	122
MsaG043190	MtrunA17_Chr1g0211711	54.444	180	79	2	4	182	651	828	5.95e-58	199
MsaG043190	MtrunA17_Chr1g0211711	64.356	101	31	1	174	269	931	1031	5.91e-34	130
MsaG043190	MtrunA17_Chr1g0183311	53.889	180	80	2	4	182	456	633	1.74e-56	194
MsaG043190	MtrunA17_Chr1g0183311	62.376	101	33	1	174	269	762	862	5.56e-34	130
MsaG043190	MtrunA17_Chr1g0211691	50.000	210	94	3	10	218	662	861	5.34e-56	193
MsaG043190	MtrunA17_Chr5g0426961	53.039	181	80	3	4	182	452	629	2.90e-55	191
MsaG043190	MtrunA17_Chr5g0426961	65.347	101	30	1	174	269	715	815	1.38e-34	132
MsaG043190	MtrunA17_Chr5g0420361	53.977	176	75	3	8	182	390	560	8.65e-54	186
MsaG043190	MtrunA17_Chr5g0420361	54.955	111	45	1	174	279	678	788	1.03e-30	121
MsaG043190	MtrunA17_Chr1g0211661	51.648	182	81	3	4	182	536	713	2.21e-52	183
MsaG043190	MtrunA17_Chr1g0211661	64.583	48	17	0	182	229	813	860	1.86e-12	67.4
MsaG043190	MtrunA17_Chr5g0448301	42.661	218	111	5	4	218	331	537	6.17e-45	160
MsaG043190	MtrunA17_Chr6g0472441	45.556	180	81	3	8	186	337	500	9.26e-43	155
MsaG043190	MtrunA17_Chr6g0472441	55.446	101	40	1	174	269	600	700	3.85e-28	113
MsaG043190	MtrunA17_Chr1g0192011	42.246	187	106	2	2	187	536	721	2.41e-42	154
MsaG043190	MtrunA17_Chr1g0192011	44.211	95	48	1	180	269	849	943	4.00e-17	81.3
MsaG043190	MtrunA17_Chr1g0211701	62.887	97	31	1	178	269	2	98	7.01e-35	123
MsaG043190	MtrunA17_Chr7g0231061	42.675	157	86	2	59	214	9	162	5.87e-33	120
MsaG043190	MtrunA17_Chr4g0048531	38.693	199	116	3	4	201	816	1009	7.20e-32	124
MsaG043190	MtrunA17_Chr4g0048531	45.283	106	52	2	169	269	1155	1259	2.79e-20	90.9
MsaG043190	MtrunA17_Chr8g0340381	58.242	91	35	1	96	186	36	123	7.10e-29	108
MsaG043190	MtrunA17_Chr2g0281051	36.842	171	102	3	13	182	525	690	2.45e-22	96.7
MsaG043190	MtrunA17_Chr2g0281051	42.708	96	50	1	179	269	842	937	9.51e-18	83.2
MsaG043190	MtrunA17_Chr8g0361391	74.545	55	13	1	175	229	79	132	9.13e-21	86.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043190	AT1G11950.2	60.606	198	76	2	5	201	488	684	1.23e-77	251
MsaG043190	AT1G11950.2	56.140	57	25	0	175	231	752	808	4.18e-12	66.6
MsaG043190	AT1G11950.1	60.606	198	76	2	5	201	488	684	2.67e-77	251
MsaG043190	AT1G11950.1	66.000	100	29	1	175	269	752	851	9.18e-36	136
MsaG043190	AT1G11950.3	60.606	198	76	2	5	201	488	684	2.67e-77	251
MsaG043190	AT1G11950.3	66.000	100	29	1	175	269	752	851	9.18e-36	136
MsaG043190	AT1G62310.1	60.000	200	78	2	5	203	506	704	2.14e-75	246
MsaG043190	AT1G62310.1	66.000	100	29	1	175	269	778	877	4.97e-35	134
MsaG043190	AT4G00990.3	51.515	198	84	3	4	189	373	570	1.82e-60	205
MsaG043190	AT4G00990.3	62.000	50	19	0	180	229	718	767	3.59e-13	70.1
MsaG043190	AT4G00990.2	51.515	198	84	3	4	189	373	570	2.08e-60	204
MsaG043190	AT4G00990.2	62.000	50	19	0	180	229	718	767	3.59e-13	70.1
MsaG043190	AT4G00990.1	51.515	198	84	3	4	189	373	570	2.56e-60	205
MsaG043190	AT4G00990.1	61.053	95	32	1	180	269	718	812	6.49e-30	119
MsaG043190	AT3G07610.2	47.179	195	97	4	4	197	509	698	2.60e-50	177
MsaG043190	AT3G07610.1	48.889	180	89	2	4	182	509	686	1.53e-49	176
MsaG043190	AT3G07610.1	56.000	100	39	1	174	268	774	873	8.62e-27	110
MsaG043190	AT3G07610.3	48.603	179	89	2	4	181	509	685	5.40e-49	174
MsaG043190	AT3G07610.3	56.000	100	39	1	174	268	796	895	7.66e-27	110
MsaG043190	AT1G09060.4	34.762	210	130	4	10	218	500	703	8.83e-27	110
MsaG043190	AT1G09060.4	45.833	96	46	2	179	269	793	887	3.03e-15	76.3
MsaG043190	AT1G09060.3	34.762	210	130	4	10	218	500	703	8.83e-27	110
MsaG043190	AT1G09060.3	45.833	96	46	2	179	269	793	887	3.03e-15	76.3
MsaG043190	AT1G09060.2	34.762	210	130	4	10	218	486	689	9.31e-27	110
MsaG043190	AT1G09060.2	45.833	96	46	2	179	269	779	873	3.02e-15	76.3
MsaG043190	AT1G09060.1	34.762	210	130	4	10	218	486	689	9.31e-27	110
MsaG043190	AT1G09060.1	45.833	96	46	2	179	269	779	873	3.02e-15	76.3
MsaG043190	AT4G21430.1	32.432	185	114	3	4	184	499	676	8.39e-24	101
MsaG043190	AT4G21430.1	38.710	93	52	1	182	269	803	895	1.15e-13	71.6

Find 59 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCAAAATCTTACATTGTTTA+TGG	0.091375	8:-40167543	MsaT043190.1:CDS
CCATAAACAATGTAAGATTT+TGG	0.144759	8:+40167543	None:intergenic
GAAGAAGATATATAAATTTC+TGG	0.233255	8:-40167740	MsaT043190.1:CDS
AAGAAGCTGGAGGCAGAATT+TGG	0.254763	8:-40148401	MsaT043190.1:intron
CACCGTTCCTCCAATAGTTT+TGG	0.275823	8:+40168703	None:intergenic
TCCCCTGCCAAGCTCATCTT+TGG	0.300486	8:+40167518	None:intergenic
GGTTACCTCACAATTTCTTC+TGG	0.303388	8:-40147587	MsaT043190.1:CDS
GTTCTTTGAAGGTTATAAAC+AGG	0.346280	8:-40167763	MsaT043190.1:CDS
CCAATGTCAAGTGACCTTAT+AGG	0.349643	8:-40168744	MsaT043190.1:CDS
TATTTAAATTCCAAAACTAT+TGG	0.351197	8:-40168713	MsaT043190.1:CDS
AAATGATAACTCAAATATAA+AGG	0.364765	8:-40168574	MsaT043190.1:CDS
TATAAAGGCTATTGATTGCT+TGG	0.378642	8:-40168559	MsaT043190.1:CDS
TCACTTGCCCTGCGATTCTT+AGG	0.381432	8:+40148006	None:intergenic
GTTGGGAGCCAATGGTTACT+TGG	0.413326	8:-40168635	MsaT043190.1:CDS
GAACCAAAGATGAGCTTGGC+AGG	0.428741	8:-40167521	MsaT043190.1:CDS
GACACTCGCCGGTTCTTTGA+AGG	0.431109	8:-40167774	MsaT043190.1:CDS
TCAAGCTTTATGACATTTCG+TGG	0.441220	8:+40167573	None:intergenic
TTAAATTCCAAAACTATTGG+AGG	0.442441	8:-40168710	MsaT043190.1:CDS
GTTTATAACCTTCAAAGAAC+CGG	0.446533	8:+40167766	None:intergenic
GAGTATTGCGATCCTCGATC+TGG	0.448811	8:-40167621	MsaT043190.1:CDS
TGTTTCTGCTCAAAAGTCAT+AGG	0.468745	8:+40148292	None:intergenic
GGATCGCAATACTCTTGAAA+TGG	0.475406	8:+40167630	None:intergenic
AGAACGTCAGATATTAGAAT+GGG	0.493172	8:+40168678	None:intergenic
GAGAACGTCAGATATTAGAA+TGG	0.494809	8:+40168677	None:intergenic
GTCGCCTTCCTAAGAATCGC+AGG	0.495056	8:-40148014	MsaT043190.1:CDS
AACAAGGGACAGGATTGAGT+TGG	0.510060	8:-40168653	MsaT043190.1:CDS
AATGTCATAAAGCTTGACTT+AGG	0.521297	8:-40167567	MsaT043190.1:CDS
AGGATTGAGTTGGGAGCCAA+TGG	0.523462	8:-40168643	MsaT043190.1:CDS
ACAAGGGACAGGATTGAGTT+GGG	0.531143	8:-40168652	MsaT043190.1:CDS
CCTATAAGGTCACTTGACAT+TGG	0.544150	8:+40168744	None:intergenic
CTTTGTGTCACCAGAAAATG+TGG	0.546636	8:-40148067	MsaT043190.1:CDS
GACGTTCTCAAACAAGGGAC+AGG	0.546938	8:-40168663	MsaT043190.1:CDS
TTCAGATTTCTAACTTGGTG+AGG	0.548770	8:+40148238	None:intergenic
TTCCAAAACTATTGGAGGAA+CGG	0.552618	8:-40168705	MsaT043190.1:CDS
TATGGAACCAAAGATGAGCT+TGG	0.554445	8:-40167525	MsaT043190.1:CDS
ATATCTGACGTTCTCAAACA+AGG	0.554941	8:-40168669	MsaT043190.1:CDS
TCAGATTTCTAACTTGGTGA+GGG	0.555680	8:+40148239	None:intergenic
ACTTGGTGAGGGCATCCAGC+AGG	0.556782	8:+40148250	None:intergenic
ACCAAAGATGAGCTTGGCAG+GGG	0.556972	8:-40167519	MsaT043190.1:CDS
TTGCCCTGCGATTCTTAGGA+AGG	0.562557	8:+40148010	None:intergenic
TATCTGACGTTCTCAAACAA+GGG	0.569647	8:-40168668	MsaT043190.1:CDS
AGATGCTCAAGCGAAAAGAC+TGG	0.574389	8:-40167713	MsaT043190.1:CDS
AATGCTCTCCAAGTAACCAT+TGG	0.575828	8:+40168627	None:intergenic
TTCGTGGCAACTTTGCAGCA+AGG	0.579150	8:+40167589	None:intergenic
TGATTGCTTGGCTAGTTGTG+AGG	0.579197	8:-40168547	MsaT043190.1:intron
AGGTAACAATTGACACTCGC+CGG	0.598477	8:-40167785	MsaT043190.1:CDS
AACGGATAAACTCGTCACAA+TGG	0.599920	8:+40167658	None:intergenic
AACCAAAGATGAGCTTGGCA+GGG	0.601978	8:-40167520	MsaT043190.1:CDS
GAAGCAGTATTTATACCTGC+TGG	0.606997	8:-40148265	MsaT043190.1:CDS
TTCTTTGAAGGTTATAAACA+GGG	0.618468	8:-40167762	MsaT043190.1:CDS
TGAGTATAAGAAGAAGCTGG+AGG	0.641321	8:-40148411	MsaT043190.1:CDS
CCATTGTGATATTGCAGACG+CGG	0.646331	8:-40167478	MsaT043190.1:intron
ACTCTTGAAATGGCAAACAA+CGG	0.653289	8:+40167640	None:intergenic
TCGCCTTCCTAAGAATCGCA+GGG	0.660799	8:-40148013	MsaT043190.1:CDS
CAAGTGAAGACAAACTTGAG+AGG	0.668066	8:-40147990	MsaT043190.1:intron
ACAAACCAGAAGAAATTGTG+AGG	0.683622	8:+40147582	None:intergenic
CCGCGTCTGCAATATCACAA+TGG	0.685598	8:+40167478	None:intergenic
AGGTTGAGAATTCCAGATCG+AGG	0.691199	8:+40167609	None:intergenic
ATAAACTCGTCACAATGGCG+CGG	0.715284	8:+40167663	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	40147569	40168763	40147569	ID=MsaG043190
Chr8	mRNA	40147569	40168763	40147569	ID=MsaT043190.1;Parent=MsaG043190
Chr8	exon	40147569	40147608	40147569	ID=MsaT043190.1.exon6;Parent=MsaT043190.1
Chr8	CDS	40147569	40147608	40147569	ID=cds.MsaT043190.1;Parent=MsaT043190.1
Chr8	exon	40147991	40148112	40147991	ID=MsaT043190.1.exon5;Parent=MsaT043190.1
Chr8	CDS	40147991	40148112	40147991	ID=cds.MsaT043190.1;Parent=MsaT043190.1
Chr8	exon	40148252	40148322	40148252	ID=MsaT043190.1.exon4;Parent=MsaT043190.1
Chr8	CDS	40148252	40148322	40148252	ID=cds.MsaT043190.1;Parent=MsaT043190.1
Chr8	exon	40148402	40148474	40148402	ID=MsaT043190.1.exon3;Parent=MsaT043190.1
Chr8	CDS	40148402	40148474	40148402	ID=cds.MsaT043190.1;Parent=MsaT043190.1
Chr8	exon	40167479	40167805	40167479	ID=MsaT043190.1.exon2;Parent=MsaT043190.1
Chr8	CDS	40167479	40167805	40167479	ID=cds.MsaT043190.1;Parent=MsaT043190.1
Chr8	exon	40168548	40168763	40168548	ID=MsaT043190.1.exon1;Parent=MsaT043190.1
Chr8	CDS	40168548	40168763	40168548	ID=cds.MsaT043190.1;Parent=MsaT043190.1

Gene Sequence

>MsaT043190.1

ATGTCAAGTGACCTTATAGGAAAAAAGCTATTTAAATTCCAAAACTATTGGAGGAACGGTGAACCCATTCTAATATCTGACGTTCTCAAACAAGGGACAGGATTGAGTTGGGAGCCAATGGTTACTTGGAGAGCATTGCGTGTAAATTCATCTTCAAGTGTCAGCTCAAATGATAACTCAAATATAAAGGCTATTGATTGCTTGGCTAGTTGTGAGGTAACAATTGACACTCGCCGGTTCTTTGAAGGTTATAAACAGGGAAGAAGATATATAAATTTCTGGCCAGAGATGCTCAAGCGAAAAGACTGGCCACTTTATGAGTTTGAAAATGTCTTGCCGCGCCATTGTGACGAGTTTATCCGTTGTTTGCCATTTCAAGAGTATTGCGATCCTCGATCTGGAATTCTCAACCTTGCTGCAAAGTTGCCACGAAATGTCATAAAGCTTGACTTAGGTCCAAAATCTTACATTGTTTATGGAACCAAAGATGAGCTTGGCAGGGGAGATTCTGTTACAAAACTCCATTGTGATATTGCAGACGCGGTTATTCATCCTATTCATTACCAATGTTTTTATTTGACTTTTGAGTATAAGAAGAAGCTGGAGGCAGAATTTGGTGTAGTACCTATGACTTTTGAGCAGAAACATGGTGAAGCAGTATTTATACCTGCTGGATGCCCTCACCAATCATGCACAAAAGTTGCAGTAGACTTTGTGTCACCAGAAAATGTGGATATATGCATGCTTTTAACTGAAGAGTTTCGTCGCCTTCCTAAGAATCGCAGGGCAAGTGAAGACAAACTTGAGAGGTTACCTCACAATTTCTTCTGGTTTGTTGAGTTCCCTTAA

Protein sequence

>MsaT043190.1

MSSDLIGKKLFKFQNYWRNGEPILISDVLKQGTGLSWEPMVTWRALRVNSSSSVSSNDNSNIKAIDCLASCEVTIDTRRFFEGYKQGRRYINFWPEMLKRKDWPLYEFENVLPRHCDEFIRCLPFQEYCDPRSGILNLAAKLPRNVIKLDLGPKSYIVYGTKDELGRGDSVTKLHCDIADAVIHPIHYQCFYLTFEYKKKLEAEFGVVPMTFEQKHGEAVFIPAGCPHQSCTKVAVDFVSPENVDICMLLTEEFRRLPKNRRASEDKLERLPHNFFWFVEFP*