Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043191 | RHN72570.1 | 72.243 | 544 | 87 | 8 | 116 | 609 | 274 | 803 | 0.0 | 744 |
MsaG043191 | RHN72570.1 | 90.110 | 91 | 7 | 1 | 71 | 159 | 121 | 211 | 1.83e-42 | 176 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043191 | sp|Q9SSE9|JMJ25_ARATH | 43.202 | 456 | 190 | 7 | 214 | 607 | 425 | 873 | 9.46e-103 | 338 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043191 | tr|A0A072V4L2|A0A072V4L2_MEDTR | 72.243 | 544 | 87 | 8 | 116 | 609 | 272 | 801 | 0.0 | 744 |
MsaG043191 | tr|A0A072V4L2|A0A072V4L2_MEDTR | 92.135 | 89 | 7 | 0 | 71 | 159 | 121 | 209 | 1.69e-44 | 181 |
Gene ID | Type | Classification |
---|---|---|
MsaG043191 | TR | Jumonji |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043191 | MtrunA17_Chr2g0289121 | 72.243 | 544 | 87 | 8 | 116 | 609 | 274 | 803 | 0.0 | 744 |
MsaG043191 | MtrunA17_Chr2g0289121 | 90.110 | 91 | 7 | 1 | 71 | 159 | 121 | 211 | 1.69e-46 | 176 |
MsaG043191 | MtrunA17_Chr2g0289031 | 69.430 | 386 | 65 | 6 | 267 | 609 | 2 | 377 | 4.86e-180 | 515 |
MsaG043191 | MtrunA17_Chr4g0075261 | 48.639 | 588 | 186 | 14 | 118 | 612 | 287 | 851 | 1.50e-166 | 498 |
MsaG043191 | MtrunA17_Chr4g0075261 | 59.524 | 84 | 33 | 1 | 77 | 159 | 140 | 223 | 1.04e-27 | 119 |
MsaG043191 | MtrunA17_Chr1g0183311 | 38.673 | 618 | 246 | 13 | 120 | 618 | 269 | 872 | 5.27e-117 | 369 |
MsaG043191 | MtrunA17_Chr1g0211711 | 40.625 | 576 | 237 | 13 | 136 | 609 | 460 | 1032 | 8.76e-117 | 373 |
MsaG043191 | MtrunA17_Chr1g0211711 | 52.632 | 57 | 26 | 1 | 104 | 159 | 343 | 399 | 1.86e-12 | 70.9 |
MsaG043191 | MtrunA17_Chr5g0426961 | 42.500 | 520 | 207 | 10 | 182 | 618 | 315 | 825 | 1.06e-114 | 362 |
MsaG043191 | MtrunA17_Chr5g0426961 | 41.758 | 91 | 52 | 1 | 70 | 159 | 106 | 196 | 9.43e-14 | 74.7 |
MsaG043191 | MtrunA17_Chr5g0420361 | 39.469 | 603 | 232 | 18 | 118 | 609 | 199 | 779 | 2.43e-108 | 345 |
MsaG043191 | MtrunA17_Chr6g0472441 | 39.100 | 578 | 259 | 17 | 117 | 626 | 163 | 715 | 1.96e-103 | 330 |
MsaG043191 | MtrunA17_Chr8g0361381 | 73.333 | 210 | 33 | 3 | 244 | 432 | 1 | 208 | 1.82e-99 | 302 |
MsaG043191 | MtrunA17_Chr1g0211661 | 39.746 | 473 | 197 | 9 | 180 | 568 | 397 | 865 | 4.09e-91 | 301 |
MsaG043191 | MtrunA17_Chr1g0211661 | 45.588 | 68 | 36 | 1 | 93 | 159 | 214 | 281 | 8.59e-13 | 71.6 |
MsaG043191 | MtrunA17_Chr2g0289091 | 76.331 | 169 | 31 | 2 | 429 | 590 | 254 | 420 | 1.57e-79 | 258 |
MsaG043191 | MtrunA17_Chr2g0289091 | 82.727 | 110 | 19 | 0 | 329 | 438 | 28 | 137 | 1.52e-55 | 194 |
MsaG043191 | MtrunA17_Chr5g0448301 | 38.381 | 383 | 172 | 8 | 218 | 538 | 251 | 631 | 2.16e-67 | 231 |
MsaG043191 | MtrunA17_Chr1g0211691 | 36.427 | 431 | 178 | 10 | 180 | 516 | 517 | 945 | 6.32e-67 | 236 |
MsaG043191 | MtrunA17_Chr1g0211691 | 49.123 | 57 | 28 | 1 | 104 | 159 | 342 | 398 | 5.01e-12 | 69.3 |
MsaG043191 | MtrunA17_Chr1g0192011 | 32.033 | 487 | 237 | 11 | 217 | 614 | 468 | 949 | 1.96e-65 | 232 |
MsaG043191 | MtrunA17_Chr8g0361391 | 86.207 | 116 | 15 | 1 | 453 | 568 | 23 | 137 | 2.41e-64 | 209 |
MsaG043191 | MtrunA17_Chr7g0275771 | 66.176 | 136 | 46 | 0 | 479 | 614 | 778 | 913 | 9.33e-51 | 189 |
MsaG043191 | MtrunA17_Chr7g0275771 | 35.612 | 278 | 136 | 4 | 217 | 451 | 378 | 655 | 1.69e-47 | 179 |
MsaG043191 | MtrunA17_Chr1g0147021 | 63.309 | 139 | 51 | 0 | 476 | 614 | 1546 | 1684 | 6.31e-49 | 184 |
MsaG043191 | MtrunA17_Chr1g0147021 | 35.674 | 356 | 163 | 12 | 123 | 433 | 997 | 1331 | 1.53e-48 | 183 |
MsaG043191 | MtrunA17_Chr1g0147021 | 39.796 | 98 | 56 | 3 | 63 | 159 | 831 | 926 | 1.62e-11 | 67.8 |
MsaG043191 | MtrunA17_Chr2g0281051 | 27.580 | 533 | 266 | 13 | 203 | 617 | 416 | 946 | 7.91e-48 | 180 |
MsaG043191 | MtrunA17_Chr2g0289101 | 59.712 | 139 | 30 | 6 | 138 | 258 | 13 | 143 | 5.86e-39 | 140 |
MsaG043191 | MtrunA17_Chr1g0211701 | 69.792 | 96 | 29 | 0 | 514 | 609 | 4 | 99 | 7.47e-39 | 140 |
MsaG043191 | MtrunA17_Chr4g0048531 | 38.798 | 183 | 102 | 2 | 444 | 617 | 1087 | 1268 | 6.24e-34 | 139 |
MsaG043191 | MtrunA17_Chr4g0048531 | 25.064 | 391 | 220 | 9 | 163 | 490 | 684 | 1064 | 1.37e-23 | 106 |
MsaG043191 | MtrunA17_Chr7g0231061 | 52.381 | 105 | 50 | 0 | 329 | 433 | 30 | 134 | 1.15e-29 | 116 |
MsaG043191 | MtrunA17_Chr8g0340381 | 59.091 | 88 | 32 | 2 | 344 | 431 | 35 | 118 | 1.10e-25 | 104 |
MsaG043191 | MtrunA17_Chr2g0289041 | 55.952 | 84 | 4 | 1 | 162 | 212 | 98 | 181 | 7.63e-20 | 88.2 |
MsaG043191 | MtrunA17_Chr2g0289041 | 91.667 | 36 | 3 | 0 | 124 | 159 | 1 | 36 | 1.41e-16 | 79.0 |
MsaG043191 | MtrunA17_Chr2g0292731 | 67.692 | 65 | 13 | 2 | 7 | 70 | 249 | 306 | 2.32e-16 | 82.4 |
MsaG043191 | MtrunA17_Chr2g0292741 | 64.615 | 65 | 15 | 2 | 7 | 70 | 241 | 298 | 1.93e-14 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043191 | AT1G11950.1 | 47.237 | 561 | 205 | 16 | 118 | 609 | 314 | 852 | 1.93e-150 | 456 |
MsaG043191 | AT1G11950.1 | 50.000 | 60 | 29 | 1 | 101 | 159 | 190 | 249 | 1.53e-13 | 74.7 |
MsaG043191 | AT1G11950.3 | 47.237 | 561 | 205 | 16 | 118 | 609 | 314 | 852 | 1.93e-150 | 456 |
MsaG043191 | AT1G11950.3 | 50.000 | 60 | 29 | 1 | 101 | 159 | 190 | 249 | 1.53e-13 | 74.7 |
MsaG043191 | AT1G62310.1 | 47.711 | 568 | 204 | 15 | 122 | 614 | 334 | 883 | 5.10e-148 | 451 |
MsaG043191 | AT1G62310.1 | 40.206 | 97 | 51 | 2 | 72 | 161 | 171 | 267 | 3.31e-16 | 83.2 |
MsaG043191 | AT1G11950.2 | 43.725 | 510 | 196 | 16 | 118 | 558 | 314 | 801 | 4.86e-117 | 368 |
MsaG043191 | AT1G11950.2 | 50.000 | 60 | 29 | 1 | 101 | 159 | 190 | 249 | 1.47e-13 | 74.7 |
MsaG043191 | AT3G07610.1 | 43.202 | 456 | 190 | 7 | 214 | 607 | 425 | 873 | 9.62e-104 | 338 |
MsaG043191 | AT3G07610.3 | 41.423 | 478 | 189 | 8 | 214 | 607 | 425 | 895 | 1.66e-99 | 327 |
MsaG043191 | AT1G09060.2 | 29.661 | 590 | 294 | 20 | 104 | 614 | 332 | 879 | 4.32e-50 | 187 |
MsaG043191 | AT1G09060.1 | 29.661 | 590 | 294 | 20 | 104 | 614 | 332 | 879 | 4.32e-50 | 187 |
MsaG043191 | AT4G00990.3 | 33.958 | 427 | 198 | 15 | 58 | 433 | 161 | 554 | 4.64e-50 | 186 |
MsaG043191 | AT4G00990.3 | 57.292 | 96 | 41 | 0 | 479 | 574 | 683 | 778 | 3.83e-29 | 124 |
MsaG043191 | AT4G00990.2 | 33.958 | 427 | 198 | 15 | 58 | 433 | 161 | 554 | 5.03e-50 | 186 |
MsaG043191 | AT4G00990.2 | 61.364 | 88 | 34 | 0 | 479 | 566 | 683 | 770 | 2.77e-28 | 121 |
MsaG043191 | AT1G09060.4 | 29.661 | 590 | 294 | 20 | 104 | 614 | 346 | 893 | 5.05e-50 | 187 |
MsaG043191 | AT1G09060.3 | 29.661 | 590 | 294 | 20 | 104 | 614 | 346 | 893 | 5.05e-50 | 187 |
MsaG043191 | AT4G00990.1 | 33.958 | 427 | 198 | 15 | 58 | 433 | 161 | 554 | 5.60e-50 | 186 |
MsaG043191 | AT4G00990.1 | 59.559 | 136 | 55 | 0 | 479 | 614 | 683 | 818 | 2.13e-46 | 176 |
MsaG043191 | AT4G21430.1 | 28.087 | 413 | 229 | 7 | 269 | 614 | 490 | 901 | 6.80e-47 | 178 |
MsaG043191 | AT3G07610.2 | 37.546 | 269 | 113 | 5 | 214 | 433 | 425 | 687 | 8.26e-40 | 156 |
Find 115 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAACATTCCAAAGAATTT+AGG | 0.229200 | 8:-40196986 | MsaT043191.1:CDS |
AATTGGGAGGATATCTAAAT+TGG | 0.230202 | 8:-40198573 | MsaT043191.1:CDS |
GTTAGCAACTATACTTTATA+TGG | 0.233440 | 8:-40200747 | MsaT043191.1:CDS |
ATAAGTATGCCTAAATTCTT+TGG | 0.239219 | 8:+40196977 | None:intergenic |
GATATCTCCAATTGATATAT+TGG | 0.240638 | 8:+40199481 | None:intergenic |
AAGAAGCTGGATGCAGAATT+TGG | 0.242380 | 8:-40196801 | MsaT043191.1:intron |
GAAGAAGATATATAAATTTC+TGG | 0.245625 | 8:-40197602 | MsaT043191.1:CDS |
TCTCTTGCCCTGTGATTCTT+AGG | 0.277632 | 8:+40196405 | None:intergenic |
TCCTCCGCCAAGCTCTTCTT+TGG | 0.300657 | 8:+40197377 | None:intergenic |
ATATCTCCAATTGATATATT+GGG | 0.312488 | 8:+40199482 | None:intergenic |
GAGCTTGGCGGAGGAGATTC+TGG | 0.313047 | 8:-40197369 | MsaT043191.1:CDS |
TGTAAAGGCTATTGATTGTT+TGG | 0.316617 | 8:-40198282 | MsaT043191.1:CDS |
ATGAAAGAGGATCTTGTTAA+TGG | 0.328568 | 8:-40197143 | MsaT043191.1:CDS |
TTACTTGTATCACAAGTTAT+TGG | 0.332796 | 8:+40198711 | None:intergenic |
TGGAGCTGAAAGCTGGATTA+AGG | 0.351608 | 8:-40200727 | MsaT043191.1:CDS |
CCTCCTATGGTTTCTTCAAC+AGG | 0.351635 | 8:+40200654 | None:intergenic |
AGAATGTGTGAGAGATCTTT+AGG | 0.356155 | 8:-40200696 | MsaT043191.1:CDS |
CTTGGAAATTACACGCTAGA+AGG | 0.357768 | 8:-40204984 | MsaT043191.1:CDS |
ATCACTATTCACATTCCATT+TGG | 0.366620 | 8:+40198670 | None:intergenic |
TACAAAACTCCATTGTGATA+TGG | 0.386545 | 8:-40197346 | MsaT043191.1:CDS |
GACACTTGCCAGTTCTTTGA+AGG | 0.389685 | 8:-40197636 | MsaT043191.1:intron |
TAGAAACATTGGTCATGAAT+AGG | 0.398371 | 8:+40196843 | None:intergenic |
TTGTGATACAAGTAATTTAG+AGG | 0.403494 | 8:-40198703 | MsaT043191.1:CDS |
CTGAAACGCATCCTTCCAAT+TGG | 0.403918 | 8:-40198590 | MsaT043191.1:CDS |
ATTGCAATTCTTACGGCAAA+AGG | 0.411110 | 8:+40199445 | None:intergenic |
TATGGTTTCTTCAACAGGTA+TGG | 0.412398 | 8:+40200659 | None:intergenic |
TCACCTTCAGATTTCTAACT+TGG | 0.413712 | 8:+40196633 | None:intergenic |
CATTGCAATTGCAATTCTTA+CGG | 0.420522 | 8:+40199438 | None:intergenic |
AGGAAAGTTAGATAATATAA+TGG | 0.431139 | 8:-40199852 | MsaT043191.1:intron |
AGCTTTCCTTTGATCTCAAA+AGG | 0.436249 | 8:+40197116 | None:intergenic |
ATGATAAGGAACGTATCTAT+TGG | 0.436357 | 8:-40199016 | MsaT043191.1:intron |
AATTTAGATATCCTCCCAAT+TGG | 0.438740 | 8:+40198575 | None:intergenic |
CTTTATATGGAGCTGAAAGC+TGG | 0.445524 | 8:-40200734 | MsaT043191.1:CDS |
AAAGTGTGATTAACCTCCTA+TGG | 0.446632 | 8:+40200641 | None:intergenic |
TGCACGTGAATCAAATTTCA+AGG | 0.464633 | 8:-40204935 | MsaT043191.1:CDS |
AGAACGTCAGATATTAGAAC+GGG | 0.465252 | 8:+40198377 | None:intergenic |
GAAATTTGATTCACGTGCAT+AGG | 0.473886 | 8:+40204939 | None:intergenic |
AGGTACCCCAATATATCAAT+TGG | 0.473897 | 8:-40199488 | MsaT043191.1:CDS |
GGATCACTATACTCTTGAAA+TGG | 0.474382 | 8:+40197489 | None:intergenic |
TTGCAATTCTTACGGCAAAA+GGG | 0.477440 | 8:+40199446 | None:intergenic |
GAGTATAGTGATCCTCGATC+TGG | 0.478549 | 8:-40197480 | MsaT043191.1:CDS |
AGAGGGTCATGTTGACCAAA+TGG | 0.479022 | 8:-40198685 | MsaT043191.1:CDS |
GTCGCCTTCCTAAGAATCAC+AGG | 0.483683 | 8:-40196413 | MsaT043191.1:CDS |
TTATTGTTCTCCAGTAAAAG+AGG | 0.483787 | 8:-40196958 | MsaT043191.1:intron |
CAGAAACAGCTGGTGCACTT+TGG | 0.491801 | 8:-40197055 | MsaT043191.1:CDS |
GTTCTTTGAAGGTTATAAAG+AGG | 0.497551 | 8:-40197625 | MsaT043191.1:CDS |
ACAAACTCCATGTCATGATA+AGG | 0.504138 | 8:-40199030 | MsaT043191.1:CDS |
CTTCTAGCGTGTAATTTCCA+AGG | 0.508793 | 8:+40204985 | None:intergenic |
TGGTTGTGGTGGATGTGTGA+TGG | 0.517690 | 8:-40198615 | MsaT043191.1:CDS |
ATGTCATCAGTGCTTGAGAA+AGG | 0.520090 | 8:-40199693 | MsaT043191.1:CDS |
AGATGATAACTCAGATGTAA+AGG | 0.522526 | 8:-40198297 | MsaT043191.1:CDS |
TTGCCCTGTGATTCTTAGGA+AGG | 0.529013 | 8:+40196409 | None:intergenic |
GTATCACAAGTTATTGGTAG+AGG | 0.529567 | 8:+40198717 | None:intergenic |
AAATTTGATTCACGTGCATA+GGG | 0.531827 | 8:+40204940 | None:intergenic |
TCTATGAGCTCACTTGACAT+TGG | 0.533763 | 8:+40198443 | None:intergenic |
TGAAGATGAAGATGGTGAGG+AGG | 0.539147 | 8:-40199909 | MsaT043191.1:intron |
AAGATATATAAATTTCTGGC+AGG | 0.539372 | 8:-40197598 | MsaT043191.1:CDS |
TGAGCTCACTTGACATTGGA+TGG | 0.540381 | 8:+40198447 | None:intergenic |
ACCAAAGAAGAGCTTGGCGG+AGG | 0.542386 | 8:-40197378 | MsaT043191.1:CDS |
CTTTGTGTCACCAGAAAATG+TGG | 0.546636 | 8:-40196466 | MsaT043191.1:CDS |
GACGTTCTCAAACAAGGGAC+AGG | 0.546938 | 8:-40198362 | MsaT043191.1:CDS |
TGCAATTCTTACGGCAAAAG+GGG | 0.547428 | 8:+40199447 | None:intergenic |
TTCAGATTTCTAACTTGGTG+AGG | 0.548770 | 8:+40196638 | None:intergenic |
CATGTCATAAAGCCTGACTT+AGG | 0.552096 | 8:-40197426 | MsaT043191.1:CDS |
TTCTTTGAAGGTTATAAAGA+GGG | 0.554859 | 8:-40197624 | MsaT043191.1:CDS |
ATATCTGACGTTCTCAAACA+AGG | 0.554941 | 8:-40198368 | MsaT043191.1:CDS |
TCAGATTTCTAACTTGGTGA+GGG | 0.555680 | 8:+40196639 | None:intergenic |
ACTTGGTGAGGGCATCCAGC+AGG | 0.556782 | 8:+40196650 | None:intergenic |
CCAAAAGAACTAGGTGGTTG+TGG | 0.561255 | 8:-40198629 | MsaT043191.1:intron |
TGAAACGCATCCTTCCAATT+GGG | 0.562137 | 8:-40198589 | MsaT043191.1:CDS |
CAAAAGTCAAATAGAAACAT+TGG | 0.562517 | 8:+40196832 | None:intergenic |
TAGATATCCTCCCAATTGGA+AGG | 0.569060 | 8:+40198579 | None:intergenic |
TATCTGACGTTCTCAAACAA+GGG | 0.569647 | 8:-40198367 | MsaT043191.1:CDS |
GAATGACAGAGAGAAAGCCT+TGG | 0.571508 | 8:-40205002 | MsaT043191.1:CDS |
TGTTGCCATGTCTCATGTGA+GGG | 0.573391 | 8:-40196189 | None:intergenic |
TGAAACTTCATTTCAAAGCG+TGG | 0.577340 | 8:+40198780 | None:intergenic |
TTGGAAATTACACGCTAGAA+GGG | 0.581878 | 8:-40204983 | MsaT043191.1:CDS |
ATGACAAAGTCAAGAAGCAA+AGG | 0.583092 | 8:-40199872 | MsaT043191.1:CDS |
TATGGAACCAAAGAAGAGCT+TGG | 0.585851 | 8:-40197384 | MsaT043191.1:CDS |
AGATGCTCAAGCTAAAAGAC+TGG | 0.588373 | 8:-40197575 | MsaT043191.1:CDS |
ACTCTTGAAATGGCAAACAA+TGG | 0.594922 | 8:+40197499 | None:intergenic |
TAAGGCTCAAGATATGAAAG+AGG | 0.595222 | 8:-40197156 | MsaT043191.1:CDS |
GTGGTGGCAACTTTGCAGCA+AGG | 0.598809 | 8:+40197448 | None:intergenic |
GTTTAAGATGTATTAAACAA+TGG | 0.600848 | 8:-40199625 | MsaT043191.1:intron |
TATCTCCAATTGATATATTG+GGG | 0.600998 | 8:+40199483 | None:intergenic |
AAAGATACATCAGAAACAGC+TGG | 0.604136 | 8:-40197065 | MsaT043191.1:CDS |
TGATTGTTTGGCTAGTTGTG+AGG | 0.604417 | 8:-40198270 | MsaT043191.1:intron |
GAAGCAGTATTTATACCTGC+TGG | 0.606997 | 8:-40196665 | MsaT043191.1:CDS |
GAGAACGTCAGATATTAGAA+CGG | 0.608616 | 8:+40198376 | None:intergenic |
TTGTTGCCATGTCTCATGTG+AGG | 0.611201 | 8:-40196190 | None:intergenic |
GGAACCAAAGAAGAGCTTGG+CGG | 0.614905 | 8:-40197381 | MsaT043191.1:CDS |
TCACCAAGTTAGAAATCTGA+AGG | 0.615043 | 8:-40196636 | MsaT043191.1:intron |
TCAGGCTTTATGACATGTGG+TGG | 0.618540 | 8:+40197432 | None:intergenic |
TGTGATACAAGTAATTTAGA+GGG | 0.619079 | 8:-40198702 | MsaT043191.1:CDS |
AGTTTCTGCTCAAAAGTCAA+AGG | 0.620576 | 8:+40196692 | None:intergenic |
TTTGTACAAGATACAAAATG+TGG | 0.624596 | 8:+40199665 | None:intergenic |
AGGTTTAGAATTCCAGATCG+AGG | 0.639738 | 8:+40197468 | None:intergenic |
ATCAGTGCTTGAGAAAGGAT+AGG | 0.639946 | 8:-40199688 | MsaT043191.1:CDS |
AAGTCAGGCTTTATGACATG+TGG | 0.640339 | 8:+40197429 | None:intergenic |
ATACCTGTTGAAGAAACCAT+AGG | 0.643178 | 8:-40200657 | MsaT043191.1:CDS |
CCTGTTGAAGAAACCATAGG+AGG | 0.648159 | 8:-40200654 | MsaT043191.1:intron |
AAAGAGGATCTTGTTAATGG+AGG | 0.651555 | 8:-40197140 | MsaT043191.1:CDS |
AACGCATCCTTCCAATTGGG+AGG | 0.652477 | 8:-40198586 | MsaT043191.1:CDS |
TGGTTCCCTCACATGAGACA+TGG | 0.652802 | 8:+40196184 | None:intergenic |
AATGGATAAACTCGTCACAA+AGG | 0.655828 | 8:+40197517 | None:intergenic |
CCATTGTGATATGGCAGACG+CGG | 0.656520 | 8:-40197337 | MsaT043191.1:intron |
ATACGTTCCTTATCATGACA+TGG | 0.660979 | 8:+40199023 | None:intergenic |
AAAGAACTAGGTGGTTGTGG+TGG | 0.668191 | 8:-40198626 | MsaT043191.1:intron |
TCGCCTTCCTAAGAATCACA+GGG | 0.672569 | 8:-40196412 | MsaT043191.1:CDS |
CCGCGTCTGCCATATCACAA+TGG | 0.685598 | 8:+40197337 | None:intergenic |
AGAGGTGATGAGTACATGCA+TGG | 0.699008 | 8:-40198747 | MsaT043191.1:CDS |
ATAAACTCGTCACAAAGGCG+CGG | 0.718712 | 8:+40197522 | None:intergenic |
CAATTGGAGATATCGCAGAG+AGG | 0.735852 | 8:-40199472 | MsaT043191.1:CDS |
GGCAAGAGAAGACAAACTTG+AGG | 0.737690 | 8:-40196391 | MsaT043191.1:intron |
GGTGATGAGTACATGCATGG+TGG | 0.779327 | 8:-40198744 | MsaT043191.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 40196192 | 40205022 | 40196192 | ID=MsaG043191 |
Chr8 | mRNA | 40196192 | 40205022 | 40196192 | ID=MsaT043191.1;Parent=MsaG043191 |
Chr8 | exon | 40196192 | 40196248 | 40196192 | ID=MsaT043191.1.exon15;Parent=MsaT043191.1 |
Chr8 | CDS | 40196192 | 40196248 | 40196192 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40196392 | 40196511 | 40196392 | ID=MsaT043191.1.exon14;Parent=MsaT043191.1 |
Chr8 | CDS | 40196392 | 40196511 | 40196392 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40196637 | 40196722 | 40196637 | ID=MsaT043191.1.exon13;Parent=MsaT043191.1 |
Chr8 | CDS | 40196637 | 40196722 | 40196637 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40196802 | 40196874 | 40196802 | ID=MsaT043191.1.exon12;Parent=MsaT043191.1 |
Chr8 | CDS | 40196802 | 40196874 | 40196802 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40196959 | 40197210 | 40196959 | ID=MsaT043191.1.exon11;Parent=MsaT043191.1 |
Chr8 | CDS | 40196959 | 40197210 | 40196959 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40197338 | 40197646 | 40197338 | ID=MsaT043191.1.exon10;Parent=MsaT043191.1 |
Chr8 | CDS | 40197338 | 40197646 | 40197338 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40198271 | 40198328 | 40198271 | ID=MsaT043191.1.exon9;Parent=MsaT043191.1 |
Chr8 | CDS | 40198271 | 40198328 | 40198271 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40198359 | 40198638 | 40198359 | ID=MsaT043191.1.exon8;Parent=MsaT043191.1 |
Chr8 | CDS | 40198359 | 40198638 | 40198359 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40198682 | 40198809 | 40198682 | ID=MsaT043191.1.exon7;Parent=MsaT043191.1 |
Chr8 | CDS | 40198682 | 40198809 | 40198682 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40199017 | 40199056 | 40199017 | ID=MsaT043191.1.exon6;Parent=MsaT043191.1 |
Chr8 | CDS | 40199017 | 40199056 | 40199017 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40199429 | 40199508 | 40199429 | ID=MsaT043191.1.exon5;Parent=MsaT043191.1 |
Chr8 | CDS | 40199429 | 40199508 | 40199429 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40199626 | 40199738 | 40199626 | ID=MsaT043191.1.exon4;Parent=MsaT043191.1 |
Chr8 | CDS | 40199626 | 40199738 | 40199626 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40199853 | 40199926 | 40199853 | ID=MsaT043191.1.exon3;Parent=MsaT043191.1 |
Chr8 | CDS | 40199853 | 40199926 | 40199853 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40200655 | 40200776 | 40200655 | ID=MsaT043191.1.exon2;Parent=MsaT043191.1 |
Chr8 | CDS | 40200655 | 40200776 | 40200655 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Chr8 | exon | 40204934 | 40205022 | 40204934 | ID=MsaT043191.1.exon1;Parent=MsaT043191.1 |
Chr8 | CDS | 40204934 | 40205022 | 40204934 | ID=cds.MsaT043191.1;Parent=MsaT043191.1 |
Gene Sequence |
Protein sequence |